Best Alignments for T0326

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
2ghrA/T0326-2ghrA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2ghrA/T0326-2ghrA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.3287e-381.74e-177
1wl8A/T0326-1wl8A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1wl8A/T0326-1wl8A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 8.4507e-216.26e-103
1gpmA/T0326-1gpmA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1gpmA/T0326-1gpmA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.6006e-191.62e-96 1gpmA c.23.16.1
c.26.2.1
d.52.2.1
1o1yA/T0326-1o1yA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1o1yA/T0326-1o1yA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.7819e-184.07e-99 c.23.16.1
1a9xB/T0326-1a9xB-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1a9xB/T0326-1a9xB-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.9093e-152.40e-91 1c3oB c.8.3.1
c.23.16.1
1vcoA/T0326-1vcoA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1vcoA/T0326-1vcoA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.3307e-092.05e-59 c.23.16.1
c.37.1.10
2abwA/T0326-2abwA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2abwA/T0326-2abwA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.1379e-066.80e-46
1g2iA/T0326-1g2iA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1g2iA/T0326-1g2iA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.4803e-065.12e-46 1g2iA c.23.16.2
1ox6A/T0326-1ox6A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1ox6A/T0326-1ox6A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.9912e-055.48e-51 c.1.2.1
c.23.16.1
1t3tA/T0326-1t3tA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1t3tA/T0326-1t3tA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.8885e-042.35e-43 a.5.10.1
c.23.16.1
d.284.1.2
d.79.4.1
d.79.4.1
d.139.1.1
d.139.1.1

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001