# List of top-scoring protein chains for t06-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1v6tA 255 7.46e-03 1sh0A 510 1.96e-01 e.8.1.4 98876 1xm8A 254 7.57e-01 1ny1A 240 8.80e-01 c.6.2.3 86395 1zzmA 259 9.01e-01 1u9yA 284 9.92e-01 1xw8A 252 1.01e+00 1j8mF 297 1.17e+00 1ng1 a.24.13.1,c.37.1.10 62742,62743 1ls1A 295 1.31e+00 a.24.13.1,c.37.1.10 78170,78171 1vl5A 260 1.39e+00 c.66.1.41 108720 1mi3A 322 1.56e+00 c.1.7.1 91274 1t0bA 252 1.88e+00 c.23.16.6 106199 2cvbA 188 1.92e+00 1vi9A 299 2.07e+00 c.72.1.5 100750 1h1yA 228 2.43e+00 c.1.2.2 76506 2c71A 216 2.55e+00 2ah5A 210 2.74e+00 1ra0A 430 3.26e+00 1h4pA 408 3.46e+00 c.1.8.3 90617 2blnA 305 4.18e+00 1z41A 338 4.54e+00 1m3qA 317 4.57e+00 a.96.1.3,d.129.1.2 91184,91185 1o60A 292 5.09e+00 c.1.10.4 92532 2cbzA 237 5.20e+00 1qzzA 374 5.92e+00 a.4.5.29,c.66.1.12 96719,96720 1qksA 567 6.22e+00 1qksA a.3.1.2,b.70.2.1 15951,27710 1d2fA 390 6.31e+00 1d2fA c.67.1.3 34411 1jmvA 141 6.44e+00 c.26.2.4 66897 1w5qA 337 6.60e+00 1v7rA 186 6.66e+00 c.51.4.1 100482 1v37A 177 6.67e+00 2agyA 361 7.49e+00 1m65A 245 8.04e+00 c.6.3.1 84847 1e4iA 447 8.61e+00 1e70M c.1.8.4 59225 1fp1D 372 8.72e+00 1fpqA a.4.5.29,c.66.1.12 59939,59940 1vecA 206 9.01e+00 c.37.1.19 100575 1jflA 228 9.24e+00 c.78.2.1,c.78.2.1 71656,71657 1om1A 332 9.54e+00 d.144.1.7 93347 1xwyA 264 9.57e+00 1eceA 358 9.72e+00 1eceA c.1.8.3 28813 1snyA 267 9.85e+00 c.2.1.2 105833 2bmaA 470 9.88e+00 1xvaA 292 9.99e+00 1xvaA c.66.1.5 34183 1wd5A 208 1.04e+01 1fmcA 255 1.04e+01 1cydA c.2.1.2 29856 1ksiA 642 1.05e+01 1ksiB b.30.2.1,d.17.2.1,d.17.2.1 24408,38043,38044 1ymiA 334 1.06e+01 2ex4A 241 1.10e+01 1z2nX 324 1.17e+01 2aotA 292 1.17e+01 1j31A 262 1.17e+01 d.160.1.2 90808 1oltA 457 1.23e+01 c.1.28.2 93334 1sgwA 214 1.31e+01 c.37.1.12 105541 1lt8A 406 1.33e+01 c.1.26.1 78186 1puoA 170 1.37e+01 a.101.1.1,a.101.1.1 95134,95135 1j1iA 296 1.40e+01 c.69.1.10 83977 2citA 282 1.44e+01 1umdA 367 1.49e+01 c.36.1.11 99599 1snnA 227 1.49e+01 d.115.1.2 105821 1ob8A 135 1.51e+01 1nffA 260 1.56e+01 c.2.1.2 80457 1uc2A 481 1.58e+01 d.261.1.1 99161 1vi2A 300 1.59e+01 c.2.1.7,c.58.1.5 100726,100727 1vcoA 550 1.62e+01 c.23.16.1,c.37.1.10 108508,108509 2aioA 269 1.66e+01 1h3nA 878 1.69e+01 a.27.1.1,b.51.1.1,c.26.1.1 76641,76642,76643 2frnA 278 1.69e+01 1i88A 389 1.73e+01 c.95.1.2,c.95.1.2 66070,66071 1ituA 369 1.75e+01 c.1.9.7 71423 2czlA 272 1.78e+01 1p1mA 406 1.86e+01 b.92.1.4,c.1.9.9 87696,87697 1qb7A 236 1.88e+01 1qb7A c.61.1.1 34087 1s1pA 331 1.90e+01 c.1.7.1 98350 2fliA 220 1.91e+01 1pq1A 196 1.96e+01 f.1.4.1 94986 1b0uA 262 2.00e+01 1b0uA c.37.1.12 32370 1rloA 271 2.04e+01 1l9vA 317 2.05e+01 d.13.2.1,d.216.1.1 73760,73761 1cqmA 101 2.06e+01 1ris d.58.14.1 39321 1g2oA 268 2.11e+01 1b8oA c.56.2.1 60228 1jztA 246 2.13e+01 c.104.1.1 63319 1zk4A 251 2.14e+01 1eg2A 319 2.17e+01 1eg2A c.66.1.11 34249 2f6kA 307 2.22e+01 1l2tA 235 2.23e+01 c.37.1.12 73514 1zn8A 180 2.25e+01 1yf3A 259 2.30e+01 1cjxA 357 2.31e+01 1cjxA d.32.1.3,d.32.1.3 38516,38517 1xg5A 279 2.34e+01 1gca 309 2.37e+01 1gca c.93.1.1 35659 2bw0A 329 2.37e+01 1j4aA 333 2.38e+01 c.2.1.4,c.23.12.1 71502,71503 2aqjA 538 2.38e+01 2c1iA 431 2.41e+01 1m0dA 138 2.42e+01 c.52.1.17 74354 1vl4A 447 2.47e+01 d.283.1.1 108718 1knwA 425 2.47e+01 b.49.2.3,c.1.6.1 90969,90970 1h2bA 359 2.48e+01 b.35.1.2,c.2.1.1 90543,90544 2gokA 429 2.48e+01 1qh5A 260 2.48e+01 1qh5A d.157.1.2 42057 1km4A 247 2.49e+01 c.1.2.3 72740 2c3mA 1231 2.55e+01 1meoA 209 2.62e+01 c.65.1.1 79035 1q0rA 298 2.64e+01 c.69.1.28 95508 1ta8A 332 2.75e+01 1p9eA 331 2.76e+01 d.157.1.5 104088 1x6vA 630 2.76e+01 2amxA 376 2.78e+01 1t5bA 201 2.81e+01 c.23.5.3 106433 2gzqA 200 2.84e+01 1x9dA 538 2.86e+01 2b0jA 358 2.86e+01 1s0aA 429 2.87e+01 c.67.1.4 98263 1ecfA 504 2.92e+01 1ecfB c.61.1.1,d.153.1.1 34053,41820 1smd 496 2.93e+01 1smd b.71.1.1,c.1.8.1 27768,28755 2f9lA 199 2.93e+01 1reqB 637 2.93e+01 1reqB c.1.19.1,c.23.6.1 29621,31248 2fauA 341 2.94e+01 1iuqA 367 2.95e+01 c.112.1.1 90703 1guzA 310 2.95e+01 c.2.1.5,d.162.1.1 65586,65587 1wr2A 238 2.96e+01 2gasA 307 2.99e+01 2fp4B 395 3.04e+01 1twyA 290 3.05e+01 1mswD 883 3.05e+01 e.8.1.3 79427 1xtoA 311 3.05e+01 1qdeA 224 3.08e+01 1qvaA c.37.1.19 32410 1y97A 238 3.12e+01 1r85A 379 3.12e+01 c.1.8.3 104839 1wwzA 159 3.23e+01 1nu5A 370 3.27e+01 c.1.11.2,d.54.1.1 92183,92184 1hx0A 496 3.27e+01 b.71.1.1,c.1.8.1 61346,61347 1pmmA 466 3.32e+01 c.67.1.6 94901 1sg4A 260 3.32e+01 1yrtA 364 3.35e+01 1vp8A 201 3.37e+01 1uwvA 433 3.37e+01 b.40.4.12,c.66.1.40 100128,100129 1j6oA 268 3.43e+01 c.1.9.12 77088 1twdA 256 3.44e+01 c.1.30.1 107397 1fehA 574 3.46e+01 1fehA c.96.1.1,d.15.4.2,d.58.1.5 36015,37690,38998 1w8sA 263 3.48e+01 1us0A 316 3.48e+01 c.1.7.1 99850 1z6oM 191 3.51e+01 2g8yA 385 3.51e+01 2bv5A 282 3.55e+01 1mnaA 298 3.63e+01 c.69.1.22 79322 1qo2A 241 3.67e+01 1qo2A c.1.2.1 28533 1u9cA 224 3.71e+01 1uarA 285 3.72e+01 c.46.1.2,c.46.1.2 107762,107763 1ukfA 188 3.76e+01 d.3.1.10 99488 2g39A 497 3.76e+01 1p4fA 293 3.78e+01 d.144.1.7 104063 1vhqA 232 3.79e+01 c.23.16.2 100696 1uh4A 637 3.83e+01 b.1.18.2,b.71.1.1,c.1.8.1 99391,99392,99393 1im8A 244 3.89e+01 c.66.1.14 66212 1fpzA 212 3.95e+01 1fpzA c.45.1.1 59976 1ji1A 637 3.95e+01 b.1.18.2,b.71.1.1,c.1.8.1 71666,71667,71668 1sg6A 393 3.96e+01 e.22.1.1 105522 1l9xA 315 3.97e+01 c.23.16.1 73762 1tvnA 293 4.00e+01 1a8q 274 4.04e+01 1brt c.69.1.12 34702 7aatA 401 4.07e+01 1ajsA c.67.1.1 34250 1mqoA 227 4.07e+01 d.157.1.1 103846 2cc0A 195 4.07e+01 1yzfA 195 4.13e+01 1yqdA 366 4.16e+01 1iukA 140 4.25e+01 c.2.1.8 83712 1d8wA 426 4.29e+01 1de5A c.1.15.2 29394 1d4oA 184 4.30e+01 1d4oA c.31.1.4 31748 1oheA 348 4.31e+01 c.45.1.1,c.45.1.1 87013,87014 1x0rA 249 4.32e+01 1ydmA 187 4.35e+01 1tqjA 230 4.37e+01 c.1.2.2 107228 1ycdA 243 4.40e+01 1bc5A 269 4.50e+01 1af7 a.58.1.1,c.66.1.8 17929,34204 3fib 249 4.60e+01 3fib d.171.1.1 42455 2d29A 387 4.63e+01 1j96A 323 4.63e+01 c.1.7.1 71616 1rkd 309 4.74e+01 1rkd c.72.1.1 34928 1v04A 355 4.78e+01 b.68.6.2 100240 1usgA 346 4.79e+01 c.93.1.1 99864 1pbuA 162 4.81e+01 d.58.46.1 88030 1d7oA 297 4.84e+01 1enp c.2.1.2 29907 1wkyA 464 4.90e+01 1vybA 238 4.98e+01 d.151.1.1 108897 1vjgA 218 5.05e+01 c.23.10.6 100810 1jksA 294 5.05e+01 d.144.1.7 71710 1su8A 636 5.09e+01 e.26.1.2 98999 1xzwA 426 5.16e+01 1x4tA 92 5.18e+01 1x1zA 252 5.23e+01 1o66A 275 5.29e+01 c.1.12.8 92547 1xccA 220 5.32e+01 1qhoA 686 5.38e+01 1cxlA b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21844,22513,27751,28738 1qwkA 317 5.43e+01 c.1.7.1 96482 1ul7A 102 5.43e+01 d.129.6.1 99540 1a4iA 301 5.45e+01 1a4iA c.2.1.7,c.58.1.2 30278,33926 1q92A 197 5.45e+01 c.108.1.8 96250 1ynpA 317 5.46e+01 1iyeA 309 5.52e+01 e.17.1.1 83786 1bw0A 416 5.52e+01 1bw0A c.67.1.1 34385 1knqA 175 5.54e+01 c.37.1.17 72786 1wwkA 307 5.56e+01 1v4sA 455 5.59e+01 c.55.1.3,c.55.1.3 100309,100310 1rw7A 243 5.60e+01 c.23.16.2 97963 1ngr 85 5.66e+01 1ngr a.77.1.2 18422 2d0iA 333 5.66e+01 1vb3A 428 5.68e+01 1v02A 565 5.70e+01 c.1.8.4 108194 1ff9A 450 5.75e+01 1ff9A c.2.1.3,d.81.1.2 30039,39954 2a1xA 308 5.77e+01 1ad1A 266 5.77e+01 1aj2 c.1.21.1 29668 1o6dA 163 5.78e+01 c.116.1.3 92567 1yk3A 210 5.83e+01 2cw6A 298 5.85e+01 1fyeA 229 5.91e+01 1fyeA c.23.16.4 31477 1yfsA 465 5.94e+01 1nar 290 5.95e+01 1nar c.1.8.5 28988 1pyaB 228 5.98e+01 1pyaB 1px5A 349 6.00e+01 a.160.1.2,d.218.1.6 95277,95278 1mkmA 249 6.02e+01 a.4.5.33,d.110.2.2 79242,79243 2f46A 156 6.04e+01 2bikB 313 6.06e+01 1zjcA 418 6.08e+01 1v7wA 807 6.09e+01 a.102.1.4,b.30.5.3 108411,108412 1z54A 132 6.10e+01 2gwgA 350 6.13e+01 1mgtA 174 6.13e+01 1mgtA a.4.2.1,c.55.7.1 16078,33753 1x7oA 287 6.16e+01 1v97A 1332 6.19e+01 a.56.1.1,d.15.4.2,d.41.1.1,d.87.2.1,d.133.1.1,d.145.1.3 108436,108437,108438,108439,108440,108441 1e2wA 251 6.21e+01 1hcz b.2.6.1,b.84.2.2 22466,28252 1ht6A 405 6.24e+01 b.71.1.1,c.1.8.1 83629,83630 1w5tA 412 6.31e+01 1wpnA 188 6.33e+01 1lhpA 312 6.36e+01 c.72.1.5 77960 1wyuA 438 6.45e+01 1tg7A 971 6.48e+01 1rkbA 173 6.50e+01 2f9sA 151 6.52e+01 1fg7A 356 6.54e+01 1gewA c.67.1.1 59819 1dqwA 267 6.56e+01 1dqwA c.1.2.3 28551 1wraA 308 6.58e+01 1zdzA 302 6.60e+01 2ffuA 501 6.62e+01 1te5A 257 6.64e+01 d.153.1.1 106795 1u7pA 164 6.64e+01 1dc1A 323 6.71e+01 1dc1A c.52.1.11 33321 1tx2A 297 6.73e+01 c.1.21.1 107420 1ars 396 6.79e+01 1ajsA c.67.1.1 34287 1jbkA 195 6.80e+01 c.37.1.20 71631 1d3cA 686 6.81e+01 1cxlA b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21827,22496,27734,28721 1seiA 130 6.85e+01 1seiA d.140.1.1 41463 2fbwB 252 6.85e+01 1vr6A 350 6.87e+01 1xtmA 175 6.90e+01 1u9iA 519 7.01e+01 1oygA 447 7.01e+01 b.67.2.2 93726 1ukcA 522 7.05e+01 c.69.1.17 107911 1qx4A 274 7.06e+01 b.43.4.2,c.25.1.1 104624,104625 1eokA 290 7.09e+01 1eokA c.1.8.5 28991 1gx1A 160 7.13e+01 d.79.5.1 70675 1fh9A 312 7.14e+01 1taxA c.1.8.3 28913 2gfnA 209 7.25e+01 1k4iA 233 7.26e+01 d.115.1.2 72056 2basA 431 7.29e+01 2bjkA 516 7.41e+01 1q5zA 177 7.42e+01 a.196.1.1 95954 1xesA 413 7.42e+01 1f5mA 180 7.46e+01 1f5mB d.110.2.1 40895 1vpqA 273 7.46e+01 2bfxA 284 7.52e+01 1xioA 261 7.56e+01 1q7zA 566 7.61e+01 c.1.21.2,c.1.26.1 96090,96091 2c4nA 250 7.61e+01 2b9wA 424 7.65e+01 1af7 274 7.65e+01 1af7 a.58.1.1,c.66.1.8 17928,34203 1qz9A 416 7.68e+01 c.67.1.3 96621 1dq3A 454 7.69e+01 1dq3A b.86.1.2,d.50.3.1,d.95.2.2,d.95.2.2 28380,38798,40585,40586 1mzyA 333 7.71e+01 b.6.1.3,b.6.1.3 103848,103849 1udzA 182 7.74e+01 b.51.1.1 99239 1o4sA 389 7.77e+01 c.67.1.1 86620 1icfI 65 7.82e+01 1icfI g.28.1.1 44958 1m7yA 435 7.83e+01 c.67.1.4 78761 1hdiA 413 7.84e+01 16pk c.86.1.1 60964 1ajsA 412 7.88e+01 1ajsA c.67.1.1 34276 1jdhA 529 7.90e+01 a.118.1.1 66549 1fmtA 314 7.95e+01 1fmtA b.46.1.1,c.65.1.1 25758,34174 1uzbA 516 8.01e+01 c.82.1.1 100220 1vdwA 254 8.03e+01 e.7.1.1 100569 1bqcA 302 8.09e+01 1bqcA c.1.8.3 28831 1c30B 382 8.11e+01 c.8.3.1,c.23.16.1 30736,31413 2ajgA 196 8.16e+01 1xu9A 286 8.19e+01 1ocyA 198 8.19e+01 d.231.1.1 86817 1m6yA 301 8.21e+01 a.60.13.1,c.66.1.23 78716,78717 3nul 130 8.21e+01 3nul d.110.1.1 40891 1uocA 289 8.24e+01 c.55.3.9 99686 1rlmA 271 8.33e+01 1yxcA 292 8.37e+01 1yyqA 374 8.37e+01 1ys1X 320 8.45e+01 1cqxA 403 8.53e+01 1cqxA a.1.1.2,b.43.4.2,c.25.1.5 15635,25667,31562 1vr5A 547 8.56e+01 2a33A 215 8.59e+01 1oi7A 288 8.60e+01 c.2.1.8,c.23.4.1 87049,87050 1vflA 356 8.60e+01 1ox0A 430 8.73e+01 c.95.1.1,c.95.1.1 87495,87496 1vbuA 328 8.76e+01 1arb 268 8.77e+01 1arb b.47.1.1 25766 1s4iA 175 8.86e+01 1dxy 333 8.89e+01 1dxy c.2.1.4,c.23.12.1 30094,31354 1kdoA 227 8.89e+01 c.37.1.1 68478 1wm1A 317 8.91e+01 c.69.1.7 109405 1wznA 252 8.95e+01 2cbuA 468 8.95e+01 1jykA 254 8.99e+01 c.68.1.13 67458