# List of top-scoring protein chains for T0325.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1oafA 261 1.93e+00 a.93.1.1 86734 1vl4A 447 2.51e+00 d.283.1.1 108718 1wd5A 208 2.56e+00 1imjA 210 2.92e+00 c.69.1.23 71246 1cnt1 187 3.10e+00 1cnt3 2ah5A 210 4.01e+00 1m61A 259 4.51e+00 d.93.1.1,d.93.1.1 90398,90399 1lluA 342 4.73e+00 b.35.1.2,c.2.1.1 91064,91065 1r75A 141 6.03e+00 b.134.1.1 97189 1w0hA 204 6.13e+00 1j7xA 302 6.53e+00 c.14.1.2 66425 1e6yA 569 6.92e+00 1mroA a.89.1.1,d.58.31.2 18529,39447 1a81A 254 8.09e+00 1a81A d.93.1.1,d.93.1.1 40507,40508 1qwkA 317 8.37e+00 c.1.7.1 96482 1s2oA 244 9.65e+00 1x42A 232 9.74e+00 1sm9A 322 9.94e+00 1mi3A 322 1.01e+01 c.1.7.1 91274 1z9aA 321 1.01e+01 1ye6A 322 1.02e+01 1vf1A 229 1.08e+01 1mroA 548 1.10e+01 1mroA a.89.1.1,d.58.31.2 18525,39443 1hbnA 549 1.11e+01 1mroA a.89.1.1,d.58.31.2 60898,60899 12asA 330 1.12e+01 12asA d.104.1.1 40783 1e6vA 553 1.15e+01 1mroA a.89.1.1,d.58.31.2 18527,39445 2a8yA 270 1.16e+01 1r38A 322 1.16e+01 1ffyA 917 1.20e+01 1qu2A a.27.1.1,b.51.1.1,c.26.1.1 16926,26891,31593 1v4tA 451 1.24e+01 c.55.1.3,c.55.1.3 100311,100312 1v4sA 455 1.25e+01 c.55.1.3,c.55.1.3 100309,100310 1yc5A 246 1.31e+01 1n11A 437 1.31e+01 d.211.1.1 79778 1e7lA 157 1.35e+01 1en7A a.140.4.1,d.4.1.5 64728,64729 1en7A 157 1.36e+01 1en7A a.140.4.1,d.4.1.5 64733,64734 1vlmA 219 1.38e+01 c.66.1.41 108836 2g3mA 693 1.59e+01 1ngr 85 1.60e+01 1ngr a.77.1.2 18422 1apxA 249 1.64e+01 1ryc a.93.1.1 18669 1ab4 493 1.91e+01 1ab4 e.11.1.1 43251 1rrvA 416 2.03e+01 c.87.1.5 105083 2alr 324 2.08e+01 1frb c.1.7.1 28679 1g2oA 268 2.33e+01 1b8oA c.56.2.1 60228 1t8sA 484 2.43e+01 c.56.2.1 106679 1o7dD 282 2.48e+01 2f2sA 406 2.51e+01 1xzpB 150 2.56e+01 1xzqB 149 2.60e+01 1tyyA 339 2.78e+01 1q9jA 422 2.79e+01 c.43.1.2,c.43.1.2 104590,104591 1bgp 309 2.80e+01 1bgp a.93.1.1 18690 2bujA 317 3.05e+01 1l9vA 317 3.13e+01 d.13.2.1,d.216.1.1 73760,73761 2ao0A 324 3.14e+01 2ffiA 288 3.24e+01 1wkbA 810 3.24e+01 1cwn 324 3.42e+01 1frb c.1.7.1 28686 1v1gA 222 3.43e+01 1ae4 325 3.45e+01 1frb c.1.7.1 28689 1td2A 287 3.46e+01 c.72.1.5 106765 1hqtA 326 3.46e+01 1frb c.1.7.1 61156 1k6mA 432 3.52e+01 c.37.1.7,c.60.1.4 77275,77276 1vi9A 299 3.52e+01 c.72.1.5 100750 1b35A 260 3.53e+01 1b35A b.121.4.1 23333 3tatA 397 3.54e+01 1ajsA c.67.1.1 34379 1zc0A 309 3.73e+01 1itzA 675 3.82e+01 c.36.1.10,c.36.1.6,c.48.1.1 76797,76798,76799 2bs3B 239 3.82e+01 1umkA 275 3.83e+01 1knqA 175 3.93e+01 c.37.1.17 72786 1qwjA 229 3.98e+01 c.68.1.13 96478 2a4aA 281 4.03e+01 2f1sA 186 4.04e+01 2blkA 122 4.05e+01 1tj7A 457 4.37e+01 1vljA 407 4.39e+01 e.22.1.2 108832 1ndh 272 4.52e+01 1ndh b.43.4.2,c.25.1.1 25662,31552 1t0hA 132 4.60e+01 b.34.2.1 106207 1jj2L 194 4.71e+01 1ffkI d.12.1.2 63097 1vm7A 311 4.71e+01 c.72.1.1 108884 1chuA 540 4.78e+01 1chuA a.7.3.1,c.3.1.4,d.168.1.1 16325,30424,42307 1knrA 540 4.81e+01 a.7.3.1,c.3.1.4,d.168.1.1 72788,72789,72790 1o0sA 605 4.81e+01 c.2.1.7,c.58.1.3 86540,86541 1dy2A 180 4.87e+01 1koe d.169.1.5 42451 1z7dA 433 4.89e+01 1deqB 408 5.12e+01 i.9.1.1 45991 2madH 373 5.19e+01 2bbkH b.69.2.1 27639 1ku1A 230 5.33e+01 a.118.3.1 72996 1xi6A 262 5.48e+01 1w56A 337 5.50e+01 1mdoA 393 5.51e+01 c.67.1.4 79013 1mi1A 414 5.70e+01 a.169.1.1,b.55.1.6 79137,79138 2gp0A 309 5.85e+01 2bbrA 195 6.18e+01 1q4kA 259 6.19e+01 d.223.1.2,d.223.1.2 95797,95798 1rqgA 722 6.32e+01 a.27.1.1,c.26.1.1,g.41.1.1 105063,105064,105065 1oivA 191 6.37e+01 c.37.1.8 93076 1vixA 420 6.43e+01 c.56.5.4,d.58.19.1 100777,100778 2bbzA 249 6.57e+01 1zin 217 6.73e+01 1zin c.37.1.1,g.41.2.1 31915,45178 2be1A 339 6.82e+01 1k8tA 510 6.84e+01 e.41.1.1 68316 1oixA 191 6.89e+01 2ae8A 221 6.89e+01 1o99A 511 6.90e+01 c.105.1.1,c.76.1.3 81235,81236 1pk0A 507 6.99e+01 e.41.1.1 94795 1lfkA 398 7.00e+01 a.104.1.1 77926 1umwA 237 7.03e+01 d.223.1.2,d.223.1.2 99631,99632 1m65A 245 7.13e+01 c.6.3.1 84847 1v6tA 255 7.22e+01 1ig8A 486 7.24e+01 2yhx c.55.1.3,c.55.1.3 64746,64747 1zbdB 134 7.35e+01 1zbdB g.50.1.1 45359 1u9dA 122 7.42e+01 d.80.1.5 107749 2f4pA 147 7.53e+01 1indH 226 7.56e+01 1igtB b.1.1.1,b.1.1.2 19839,20943 1wzuA 300 7.58e+01 1q4rA 112 7.61e+01 d.58.4.4 95823 1m1zA 513 7.73e+01 c.26.2.1,d.153.1.1 78457,78458 2amxA 376 7.81e+01 1dy1A 188 7.88e+01 1koe d.169.1.5 42450 1w5oA 337 8.04e+01 1nffA 260 8.06e+01 c.2.1.2 80457 1z3aA 168 8.10e+01 2tpt 440 8.17e+01 1brwA a.46.2.1,c.27.1.1,d.41.3.1 17759,31623,38621 1gcjA 460 8.20e+01 1qgrA a.118.1.1 19125 1skoB 130 8.28e+01 d.110.7.1 105677 1ry8A 323 8.39e+01 1koe 172 8.43e+01 1koe d.169.1.5 42448 1pz3A 502 8.49e+01 b.71.1.2,c.1.8.3 95396,95397 1ibrB 462 8.50e+01 1qgrA a.118.1.1 19120 1e3iA 376 8.64e+01 2ohxA b.35.1.2,c.2.1.1 24741,29757 1s1pA 331 8.71e+01 c.1.7.1 98350 1m5nS 485 8.77e+01 a.118.1.1 78653 1xm8A 254 8.87e+01