# List of top-scoring protein chains for t06-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1ornA 226 3.55e-32 a.96.1.1 87342 1mun 225 1.35e-30 1mun a.96.1.2 18744 2abk 211 2.71e-30 2abk a.96.1.1 18743 1keaA 221 3.38e-26 a.96.1.2 68491 1mpgA 282 1.33e-22 1mpgA a.96.1.3,d.129.1.2 18747,41296 1m3qA 317 1.04e-20 a.96.1.3,d.129.1.2 91184,91185 1pu6A 218 2.27e-16 a.96.1.5 95123 1ngnA 155 1.14e-10 a.96.1.2 85697 1lmzA 187 2.71e-03 a.96.1.4 74037 1vp8A 201 2.12e-01 2csbA 519 2.92e-01 1tk9A 188 4.65e-01 c.80.1.3 107082 2c46A 241 4.96e-01 1y88A 199 6.26e-01 1vgmA 378 8.52e-01 1g63A 181 9.78e-01 1g5qA c.34.1.1 60299 1t56A 216 1.40e+00 a.4.1.9,a.121.1.1 106428,106429 1k4nA 192 2.11e+00 d.32.1.5 72059 1vk3A 615 2.24e+00 d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1 100846,100847,100848,100849 1n1bA 549 2.33e+00 a.102.4.1,a.128.1.3 79799,79800 1jx4A 352 2.38e+00 d.240.1.1,e.8.1.7 90378,90379 1iomA 377 2.92e+00 a.103.1.1 83698 1jm1A 204 3.10e+00 b.33.1.1 71745 1lq9A 112 3.30e+00 d.58.4.3 78129 1nc5A 373 3.37e+00 a.102.1.6 85548 1xr4A 509 3.48e+00 1zwwA 256 3.60e+00 4pgaA 337 3.78e+00 4pgaA c.88.1.1 35565 1i6lA 328 4.14e+00 c.26.1.1 66041 2f9lA 199 4.39e+00 1obbA 480 4.81e+00 c.2.1.5,d.162.1.2 86760,86761 2fsqA 243 4.85e+00 1snnA 227 5.38e+00 d.115.1.2 105821 1j8mF 297 5.66e+00 1ng1 a.24.13.1,c.37.1.10 62742,62743 1zu4A 320 5.73e+00 1wj5A 120 5.81e+00 1a41 234 5.83e+00 1a41 d.163.1.2 42174 1odfA 290 6.05e+00 c.37.1.6 92782 1ebfA 358 6.12e+00 1ebuA c.2.1.3,d.81.1.2 30033,39948 2btzA 394 6.31e+00 2aexA 346 6.68e+00 1po5A 476 7.01e+00 a.104.1.1 94963 1tc1A 220 7.07e+00 1tc1A c.61.1.1 34083 1wf3A 301 7.24e+00 2fnaA 357 7.27e+00 1s95A 333 7.29e+00 d.159.1.3 105375 1i0lA 221 7.43e+00 c.61.1.1 71096 1cuk 203 7.49e+00 1hjp a.5.1.1,a.60.2.1,b.40.4.2 16273,17946,25265 2awiA 317 7.60e+00 1ro2A 216 7.65e+00 d.264.1.2 97665 1wvqA 167 7.72e+00 1ro0A 216 8.07e+00 d.264.1.2 97664 1o7jA 327 8.64e+00 c.88.1.1 81140 2b5dX 528 9.35e+00 1hgxA 183 9.47e+00 1tc1A c.61.1.1 34027 1brwA 433 9.79e+00 1brwA a.46.2.1,c.27.1.1,d.41.3.1 17764,31628,38626 2aplA 157 9.90e+00 2g64A 140 1.01e+01 1w6gA 646 1.02e+01 1x2iA 75 1.03e+01 1m1nB 522 1.05e+01 c.92.2.3 78418 2apoB 60 1.06e+01 1k2eA 156 1.08e+01 d.113.1.1 72010 1hyeA 313 1.09e+01 2cmd c.2.1.5,d.162.1.1 61400,61401 1p2fA 220 1.11e+01 a.4.6.1,c.23.1.1 87720,87721 1cpt 412 1.12e+01 1cpt a.104.1.1 18968 2ebn 289 1.15e+01 2ebn c.1.8.5 28990 1rjoA 646 1.17e+01 2fnuA 375 1.19e+01 1zpdA 568 1.22e+01 1zpdA c.31.1.3,c.36.1.5,c.36.1.9 31741,31785,31786 1ma3A 253 1.22e+01 c.31.1.5 78883 1b4pA 217 1.33e+01 a.45.1.1,c.47.1.5 83158,83159 1odoA 408 1.41e+01 a.104.1.1 92783 1vggA 161 1.49e+01 1r2zA 274 1.55e+01 a.156.1.2,b.113.1.1,g.39.1.8 96892,96893,96894 1dk0A 188 1.65e+01 1b2vA d.35.1.1 38530 1dofA 403 1.69e+01 1c3cA a.127.1.1 19429 1vfgA 390 1.70e+01 a.173.1.1,d.218.1.4 108570,108571 1vhtA 218 1.73e+01 c.37.1.1 100700 1owlA 484 1.74e+01 a.99.1.1,c.28.1.1 93647,93648 1kfcA 268 1.74e+01 c.1.2.4 77371 1sqnA 261 1.78e+01 a.123.1.1 105944 1q15A 503 1.83e+01 c.26.2.1,d.153.1.1 95538,95539 1owcA 427 1.84e+01 a.103.1.1 104039 1wxcB 134 1.90e+01 1gntA 553 1.90e+01 e.26.1.1 70290 2czrA 226 1.92e+01 2bk9A 153 2.05e+01 2be3A 226 2.13e+01 2bynA 227 2.19e+01 1wohA 305 2.24e+01 c.42.1.1 109446 1x91A 153 2.24e+01 1j1iA 296 2.29e+01 c.69.1.10 83977 1y14A 187 2.30e+01 1tq4A 413 2.35e+01 c.37.1.8 107201 1nnsA 326 2.40e+01 c.88.1.1 85910 1fj2A 232 2.43e+01 1auoA c.69.1.14 34720 1xuqA 212 2.53e+01 1rkiA 102 2.53e+01 1zdzA 302 2.61e+01 1aj8A 371 2.62e+01 1aj8A a.103.1.1 18900 1wd5A 208 2.64e+01 2gnpA 266 2.67e+01 2an3A 289 2.68e+01 1gcyA 527 2.69e+01 1jdc b.71.1.1,c.1.8.1 27788,28775 2g3bA 208 2.69e+01 1ydgA 211 2.70e+01 1bl0A 129 2.72e+01 1d5yA a.4.1.8,a.4.1.8 16053,16054 1ua7A 422 2.75e+01 b.71.1.1,c.1.8.1 107759,107760 1wz9A 375 2.81e+01 1g3qA 237 2.82e+01 1hyqA c.37.1.10 60237 1wwuA 99 2.87e+01 1g55A 343 2.91e+01 1g55A c.66.1.26 34247 2d2eA 250 2.92e+01 1ykwA 435 2.97e+01 1u7iA 136 3.04e+01 d.32.1.7 107724 1zy4A 303 3.09e+01 1vimA 200 3.11e+01 c.80.1.3 100758 1dxy 333 3.13e+01 1dxy c.2.1.4,c.23.12.1 30094,31354 2f8aA 208 3.16e+01 1v2zA 111 3.21e+01 a.186.1.1 108300 2f9dA 125 3.29e+01 1q4gA 553 3.39e+01 a.93.1.2,g.3.11.1 95789,95790 1z00B 84 3.42e+01 1lvaA 258 3.58e+01 a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35 74276,74277,74278,74279 1m6yA 301 3.60e+01 a.60.13.1,c.66.1.23 78716,78717 1lbu 213 3.72e+01 1lbu a.20.1.1,d.65.1.1 16416,39549 1jayA 212 3.74e+01 c.2.1.6 66478 1e4yA 214 3.79e+01 1zin c.37.1.1,g.41.2.1 31901,45181 1mw5A 187 3.79e+01 d.259.1.1 91477 1jx6A 342 3.80e+01 c.93.1.1 67406 2czdA 208 3.88e+01 1fs0G 230 3.90e+01 1fs0G c.49.2.1 59999 1xqoA 256 3.95e+01 1dk8A 147 3.97e+01 1agrE a.91.1.1 18548 1wu4A 396 4.06e+01 1v7rA 186 4.07e+01 c.51.4.1 100482 1mzgA 146 4.12e+01 d.224.1.1 79696 1qr0A 228 4.22e+01 1qr0A d.150.1.1,d.150.1.1 59038,59039 2akoA 251 4.32e+01 2c4jA 218 4.32e+01 2bcgY 206 4.34e+01 1kwmA 402 4.37e+01 c.56.5.1,d.58.3.1 73079,73080 2anxA 146 4.40e+01 1dz3A 130 4.42e+01 1dz3A c.23.1.1 31105 1txgA 335 4.44e+01 2bjiA 277 4.45e+01 1sk4A 163 4.49e+01 d.118.1.1 105664 1qlmA 316 4.52e+01 1qlmA d.147.1.1 41765 1i2mA 216 4.55e+01 1byuA c.37.1.8 61568 1rlr 761 4.56e+01 1rlr a.98.1.1,c.7.1.2 18753,30679 1twiA 434 4.58e+01 b.49.2.3,c.1.6.1 107399,107400 1sb2A 133 4.67e+01 1h4pA 408 4.71e+01 c.1.8.3 90617 2a11A 242 4.78e+01 2a5jA 191 4.78e+01 2af4C 333 4.79e+01 1vjyA 303 4.82e+01 d.144.1.7 108633 1r7mA 235 4.84e+01 1o26A 232 4.85e+01 d.207.1.1 86566 1epuA 591 4.94e+01 1dn1A e.25.1.1 43358 1zjjA 263 4.96e+01 1y4tA 322 5.01e+01 1ho8A 480 5.04e+01 1ho8A a.118.1.9 61107 1hdiA 413 5.04e+01 16pk c.86.1.1 60964 1q79A 514 5.14e+01 a.160.1.1,d.218.1.3,d.58.16.1 104548,104549,104550 1qg8A 255 5.20e+01 1qg8A c.68.1.1 34505 2a19A 175 5.23e+01 1u67A 600 5.25e+01 a.93.1.2,g.3.11.1 107697,107698 1w4vA 119 5.28e+01 1qv1A 195 5.30e+01 a.39.1.5 96347 2bkaA 242 5.30e+01 1kid 203 5.32e+01 1derA c.8.5.1 30771 1r7aA 504 5.33e+01 b.71.1.1,c.1.8.1 97192,97193 1alvA 173 5.37e+01 1alvA a.39.1.8 17370 1gpr 162 5.38e+01 1gpr b.84.3.1 28267 1x13A 401 5.42e+01 1ka2A 499 5.46e+01 d.92.1.5 77305 2bw0A 329 5.51e+01 1m45A 148 5.53e+01 a.39.1.5 78598 1pjr 724 5.58e+01 1pjr c.37.1.19,c.37.1.19 32391,32392 2bdeA 470 5.59e+01 1rcwA 231 5.60e+01 a.132.1.4 97299 1oyzA 280 5.66e+01 a.118.1.16 93775 1wvfA 520 5.72e+01 2afdA 88 5.92e+01 1us5A 314 5.95e+01 c.94.1.1 99856 1mw7A 240 5.98e+01 e.39.1.1 79557 1pujA 282 6.02e+01 c.37.1.8 88294 1vqoE 178 6.14e+01 1u9yA 284 6.15e+01 1czpA 98 6.18e+01 1awd d.15.4.1 37645 1a70 97 6.31e+01 1awd d.15.4.1 37678 1tcvA 287 6.41e+01 1fkmA 396 6.41e+01 1fkmA a.69.2.1,a.69.2.1 18315,18316 1j2rA 199 6.46e+01 c.33.1.3 90788 1rifA 282 6.46e+01 c.37.1.23 97507 1ikpA 613 6.47e+01 b.29.1.7,d.166.1.1,f.1.5.1 66182,66183,66184 1yy7A 213 6.48e+01 1f6fA 199 6.51e+01 1f6fA a.26.1.1 16839 1uj6A 227 6.54e+01 c.124.1.4,d.58.40.1 107898,107899 1gvnB 287 6.70e+01 c.37.1.21 76354 1dq3A 454 6.78e+01 1dq3A b.86.1.2,d.50.3.1,d.95.2.2,d.95.2.2 28380,38798,40585,40586 1qgvA 142 6.94e+01 1qgvA c.47.1.8 33056 1im5A 180 7.01e+01 c.33.1.3 66211 1ajsA 412 7.02e+01 1ajsA c.67.1.1 34276 1jlvA 209 7.10e+01 a.45.1.1,c.47.1.5 71729,71730 1uhnA 189 7.11e+01 a.39.1.5 99399 1tqyB 415 7.12e+01 c.95.1.1,c.95.1.1 107247,107248 1xngA 268 7.12e+01 2bmeA 186 7.13e+01 1tyv 542 7.20e+01 1tyv b.80.1.6 28038 1ni9A 338 7.43e+01 e.7.1.2 85739 1bkzA 135 7.48e+01 1a3k b.29.1.3 24202 1nw3A 416 7.51e+01 c.66.1.31 86288 1r89A 437 7.58e+01 a.160.1.3,d.218.1.7,d.58.16.2 97221,97222,97223 1h9dB 134 7.61e+01 2jhbA b.54.1.1 60822 1vjkA 98 7.65e+01 d.15.3.1 108631 1vkmA 297 7.67e+01 c.138.1.1 108670 1aisA 182 7.68e+01 1ytbA d.129.1.1,d.129.1.1 41288,41289 1ywfA 296 7.69e+01 1g0oA 283 7.70e+01 1ybvA c.2.1.2 60181 1vlmA 219 7.74e+01 c.66.1.41 108836 1ni4B 341 7.74e+01 c.36.1.7,c.48.1.2 85729,85730 1n4kA 381 7.77e+01 a.118.22.1,b.42.6.1 79992,79993 1fvuA 133 7.79e+01 1ixxB d.169.1.1 42345 1iqrA 420 7.80e+01 a.99.1.1,c.28.1.1 66275,66276 2g9iA 249 7.80e+01 2c71A 216 7.80e+01 1b3uA 588 7.82e+01 1b3uA a.118.1.2 19135 2fz4A 237 7.83e+01 1v1aA 309 7.84e+01 c.72.1.1 100249 1ryoA 327 7.91e+01 c.94.1.2 98108 1g4mA 393 7.97e+01 b.1.18.11,b.1.18.11 65143,65144 1qo7A 394 7.99e+01 1qo7A c.69.1.11 34697 1gpjA 404 8.01e+01 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 2cybA 323 8.02e+01 1j79A 347 8.04e+01 1j79A c.1.9.4 62675 1f0yA 302 8.04e+01 2hdhA a.100.1.3,c.2.1.6 18793,30197 1zkdA 387 8.04e+01 1no1A 126 8.07e+01 a.179.1.1 85913 1f8fA 371 8.12e+01 b.35.1.2,c.2.1.1 83246,83247 1qh8B 519 8.20e+01 1qguB c.92.2.3 35634 1offA 97 8.22e+01 d.15.4.1 86947 1wnaA 131 8.24e+01 1n7zA 334 8.28e+01 b.127.1.1 85380 1sek 378 8.30e+01 1sek e.1.1.1 42675 1xizA 159 8.31e+01 1vicA 262 8.36e+01 c.68.1.13 100756 1b0xA 94 8.38e+01 1b4fA a.60.1.2 17933 1auk 489 8.40e+01 1auk c.76.1.2 35030 1txuA 273 8.40e+01 a.222.1.1 107439 2bkkA 264 8.46e+01 1yisA 478 8.53e+01 1ynpA 317 8.62e+01 1rvkA 382 8.69e+01 c.1.11.2,d.54.1.1 97928,97929 1nt2B 258 8.73e+01 a.183.1.1 86150 2bg5A 324 8.75e+01 1sffA 426 8.81e+01 c.67.1.4 105482 2aotA 292 8.82e+01 1wolA 122 8.83e+01 1i24A 404 8.95e+01 c.2.1.2 83663 1qopA 268 8.96e+01 2tysA c.1.2.4 28570 1wixA 164 8.98e+01 2fk8A 318 8.99e+01