# List of top-scoring protein chains for t2k-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2fs2A 151 1.50e-19 1psuA 140 1.52e-19 d.38.1.5 88285 1j1yA 136 1.49e-16 d.38.1.5 90776 1wluA 136 1.78e-16 1zkiA 133 2.81e-16 2b6eA 146 7.10e-14 1o0iA 138 1.15e-13 d.38.1.5 86532 1vh5A 148 1.47e-12 d.38.1.5 100642 1yliA 153 1.67e-12 1ixlA 131 1.36e-11 d.38.1.5 90717 1q4uA 151 2.19e-11 d.38.1.5 95828 2gvhA 288 5.41e-11 1vpmA 169 1.50e-10 1yocA 147 1.74e-06 1sh8A 154 5.28e-06 d.38.1.5 105549 2cyeA 133 8.52e-06 1njkA 156 2.98e-05 d.38.1.1 85818 1t82A 155 3.05e-05 d.38.1.5 106639 1s5uA 138 3.16e-05 d.38.1.1 98573 2b3nA 159 9.55e-05 2av9A 147 3.13e-04 1z54A 132 3.25e-04 1u1zA 168 1.64e-03 d.38.1.6 107602 1c8uA 285 3.59e-03 1c8uA d.38.1.3,d.38.1.3 38547,38548 2cwzA 141 1.18e-02 1z6bA 154 1.22e-02 2gf6A 135 1.49e-02 1iq6A 134 2.22e-02 d.38.1.4 76755 1tbuA 118 6.36e-02 2bi0A 337 7.18e-02 2aliA 158 1.78e-01 1lo7A 141 5.37e-01 d.38.1.1 74144 1bvqA 141 6.12e-01 1bvqA d.38.1.1 38542 2essA 248 1.89e+00 1yycA 174 2.23e+00 2b59A 187 4.75e+00 2bm3A 166 5.19e+00 1b8aA 438 5.50e+00 1b8aA b.40.4.1,d.104.1.1 25244,40765 1tf4A 605 5.83e+00 1tf4A a.102.1.2,b.2.2.2 18827,22393 1mkaA 171 5.87e+00 1mkaA d.38.1.2 38543 1su8A 636 6.32e+00 e.26.1.2 98999 1jjyA 636 6.32e+00 1jjyA 1rf6A 427 6.61e+00 d.68.2.2 97366 1l0wA 580 6.78e+00 b.40.4.1,d.74.4.1,d.104.1.1 73426,73427,73428 1f3uA 118 8.31e+00 1f3uA b.65.1.1 27521 1w9hA 427 9.61e+00 3fib 249 1.01e+01 3fib d.171.1.1 42455 1eqkA 102 1.02e+01 1eqkA d.17.1.2 37998 2fibA 269 1.03e+01 3fib d.171.1.1 42457 2f57A 317 1.03e+01 1fib 269 1.04e+01 3fib d.171.1.1 42456 1lshA 1056 1.22e+01 a.118.4.1,f.7.1.1,f.7.1.1 74242,74243,74244 1q7lA 198 1.26e+01 c.56.5.4 96044 1nkgA 508 1.29e+01 b.3.1.2,b.18.1.25,b.30.5.10 103859,103860,103861 1vehA 92 1.33e+01 2c30A 321 1.34e+01 1n9pA 207 1.40e+01 b.1.18.16 80343 1s68A 249 1.42e+01 d.142.2.4 98591 2f4lA 297 1.48e+01 1r4vA 171 1.52e+01 a.197.1.1 97049 1y9qA 192 1.65e+01 1xrtA 467 1.68e+01 2a15A 139 1.74e+01 1rmg 422 1.75e+01 1rmg b.80.1.3 28029 1kzfA 230 1.77e+01 d.108.1.3 73354 3proD 166 1.79e+01 3proC d.52.1.1,d.52.1.1 38814,38815 1eysH 259 1.89e+01 6prcH b.41.1.1,f.23.10.1 25484,43517 3proC 166 2.05e+01 3proC d.52.1.1,d.52.1.1 38812,38813 1vrbA 342 2.05e+01 1h1aA 191 2.10e+01 b.29.1.11 83450 1rbp 182 2.20e+01 1aqb b.60.1.1 27085 1xnkA 196 2.25e+01 1sdjA 310 2.30e+01 d.21.1.2,d.21.1.2 98807,98808 1prtF 98 2.50e+01 1prtF b.40.2.1 25140 2pcdM 238 2.54e+01 3pchM b.3.6.1 22760 1nox 205 2.55e+01 1nox d.90.1.1 40242 3pchM 238 2.58e+01 3pchM b.3.6.1 22748 3fivA 116 2.64e+01 1fmb b.50.1.1 26768 1hjrA 158 2.64e+01 1hjrA c.55.3.6 33727 3pcgM 238 2.72e+01 3pchM b.3.6.1 22742 1q7fA 286 2.78e+01 b.68.9.1 96036 1g0dA 695 2.80e+01 1f13A b.1.18.9,b.1.5.1,b.1.5.1,d.3.1.4 60166,60167,60168,60169 1nvpD 108 2.94e+01 a.32.1.1,b.56.1.1 92213,92214 1fm4A 159 3.15e+01 1bv1 d.129.3.1 76186 1w6nA 134 3.36e+01 1bhgA 613 3.43e+01 1bhgA b.1.4.1,b.18.1.5,c.1.8.3 22161,23766,28889 2gr8A 99 3.57e+01 1qqjA 419 3.58e+01 1qcnA b.34.8.1,d.177.1.1 59034,59035 1hyoA 421 3.58e+01 1qcnA b.34.8.1,d.177.1.1 59001,59002 1qcnA 421 3.58e+01 1qcnA b.34.8.1,d.177.1.1 59017,59018 1c0aA 585 3.59e+01 1c0aA b.40.4.1,d.74.4.1,d.104.1.1 25246,39731,40767 1hbp 183 3.86e+01 1aqb b.60.1.1 27079 1kt6A 183 3.86e+01 b.60.1.1 84466 1ktjA 129 3.88e+01 b.1.18.7 72974 1u94A 356 3.88e+01 c.37.1.11,d.48.1.1 107743,107744 2fivA 116 3.96e+01 1fmb b.50.1.1 26766 4fiv 113 3.97e+01 1fmb b.50.1.1 26762 1xtoA 311 3.99e+01 1h5uA 842 4.10e+01 1a8i c.87.1.4 60655 1kl9A 182 4.36e+01 b.40.4.5 72681 2reb 352 4.38e+01 2reb c.37.1.11,d.48.1.1 32282,38767 1i82A 189 4.50e+01 1i82A b.1.9.2 61937 1i8aA 189 4.50e+01 1i82A b.1.9.2 61951 1sltB 134 4.82e+01 1c1lA b.29.1.3 24187 1pn2A 280 4.82e+01 d.38.1.4,d.38.1.4 94930,94931 1hbq 183 4.92e+01 1aqb b.60.1.1 27078 2ptd 298 4.97e+01 2plc c.1.18.2 29605 1sltA 134 5.13e+01 1c1lA b.29.1.3 24186 1fivA 113 5.18e+01 1fmb b.50.1.1 26764 1g87A 614 5.30e+01 a.102.1.2,b.2.2.2 83275,83276 1slaA 134 5.36e+01 1c1lA b.29.1.3 24196 1te5A 257 5.44e+01 d.153.1.1 106795 1zyoA 191 5.55e+01 2c5uA 375 5.72e+01 1vq0A 302 5.79e+01 1o9yA 84 5.88e+01 b.139.1.1 92692 1v05A 96 5.97e+01 1qmrA 159 5.98e+01 1bv1 d.129.3.1 41314 1k3eA 156 5.99e+01 d.198.1.1 68103 1qyaA 307 6.01e+01 d.21.1.2,d.21.1.2 104653,104654 1dxy 333 6.04e+01 1dxy c.2.1.4,c.23.12.1 30094,31354 1bxeA 113 6.04e+01 1bxeA d.55.1.1 38898 1fo0B 112 6.07e+01 1kb5B b.1.1.1 20631 1s7iA 124 6.07e+01 d.58.4.9 105353 1i31A 314 6.18e+01 1bw8A b.2.7.1 22481 1l1qA 186 6.28e+01 c.61.1.1 77653 1eo9B 241 6.46e+01 3pchM b.3.6.1 22826 1zkpA 268 6.46e+01 1o6sA 466 6.49e+01 b.1.18.15,c.10.2.1 81094,81095 1at3A 247 6.91e+01 1at3A b.57.1.1 27021 4enl 436 7.07e+01 4enl c.1.11.1,d.54.1.1 29202,38846 1b65A 375 7.08e+01 1b65A d.154.1.1 42020 1q41A 424 7.11e+01 d.144.1.7 95774 2oneA 436 7.13e+01 4enl c.1.11.1,d.54.1.1 29203,38847 1hbxG 157 7.13e+01 1awcA a.4.5.21 60934 2al1A 436 7.21e+01 1oneA 436 7.21e+01 4enl c.1.11.1,d.54.1.1 29200,38844 2al2A 436 7.21e+01 1aqb 183 7.28e+01 1aqb b.60.1.1 27084 1gym 298 7.36e+01 2plc c.1.18.2 29606 2fg1A 158 7.60e+01 2conA 79 7.65e+01 1bv1 159 7.72e+01 1bv1 d.129.3.1 41313 1pkp 150 7.73e+01 1pkp d.14.1.1,d.50.1.2 37551,38787 1qovH 260 7.93e+01 6prcH b.41.1.1,f.23.10.1 25464,43457 1xezA 721 7.93e+01 1aijH 260 8.07e+01 6prcH b.41.1.1,f.23.10.1 25466,43463 1zo2A 129 8.11e+01 1mfqC 129 8.22e+01 a.36.1.1 79046 1i78A 297 8.27e+01 f.4.4.1 66046 1gq8A 319 8.39e+01 b.80.1.5 70350 1l2tA 235 8.59e+01 c.37.1.12 73514 1sz6A 249 8.62e+01 1ayyA 151 8.63e+01 1apyA d.153.1.5 42016 1gsoA 431 8.67e+01 1gsoA b.84.2.1,c.30.1.1,d.142.1.2 28240,31647,41492 1k4jA 230 8.78e+01 d.108.1.3 72057 1zhhB 242 8.86e+01 1e2tA 284 8.88e+01 1e2tA d.3.1.5 37121 2cu6A 103 8.92e+01 2tpt 440 8.96e+01 1brwA a.46.2.1,c.27.1.1,d.41.3.1 17759,31623,38621 1v7rA 186 8.98e+01 c.51.4.1 100482 1meoA 209 8.98e+01 c.65.1.1 79035 1vzyA 291 8.99e+01 1ux2A 212 8.99e+01 b.96.1.1 100132