# List of top-scoring protein chains for t06-100-30-stride-ebghtl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1zkiA 133 1.18e-17 1o0iA 138 3.69e-17 d.38.1.5 86532 1vh5A 148 1.25e-16 d.38.1.5 100642 2fs2A 151 4.86e-16 1j1yA 136 6.41e-16 d.38.1.5 90776 1wluA 136 6.53e-16 1vpmA 169 4.21e-15 1yliA 153 9.37e-15 1z6bA 154 1.13e-14 1q4uA 151 8.15e-14 d.38.1.5 95828 1ixlA 131 2.14e-13 d.38.1.5 90717 1yocA 147 7.71e-13 2gvhA 288 2.23e-12 1t82A 155 1.72e-11 d.38.1.5 106639 2cyeA 133 5.17e-11 1sh8A 154 1.57e-10 d.38.1.5 105549 1z54A 132 3.19e-09 1s5uA 138 3.81e-09 d.38.1.1 98573 2b3nA 159 2.55e-08 2aliA 158 1.45e-07 2gf6A 135 4.85e-07 2cwzA 141 7.45e-07 1iq6A 134 1.39e-06 d.38.1.4 76755 1lo7A 141 2.36e-06 d.38.1.1 74144 1mkaA 171 9.56e-06 1mkaA d.38.1.2 38543 1tbuA 118 3.86e-05 2essA 248 8.18e-05 1c8uA 285 1.27e-04 1c8uA d.38.1.3,d.38.1.3 38547,38548 2bi0A 337 2.23e-04 1yycA 174 2.49e-02 1pn2A 280 3.23e-01 d.38.1.4,d.38.1.4 94930,94931 1s1fA 406 1.57e+00 1te5A 257 1.69e+00 d.153.1.1 106795 1lshA 1056 1.80e+00 a.118.4.1,f.7.1.1,f.7.1.1 74242,74243,74244 1vrmA 325 2.01e+00 1g24A 211 2.53e+00 1g24A d.166.1.1 42270 2bm3A 166 2.65e+00 1xdnA 277 3.91e+00 1b06A 210 3.98e+00 1avmA a.2.11.1,d.44.1.1 15740,38737 1r45A 204 4.48e+00 1txqA 93 4.71e+00 1cb0A 283 5.03e+00 1cb0A c.56.2.1 33790 1d2oA 187 5.44e+00 1d2oA b.3.5.1,b.3.5.1 22625,22626 1tcvA 287 6.15e+00 2bf6A 449 6.25e+00 1w9hA 427 8.09e+00 1h3nA 878 8.27e+00 a.27.1.1,b.51.1.1,c.26.1.1 76641,76642,76643 1w66A 232 9.27e+00 2gr8A 99 9.41e+00 1zxxA 319 9.58e+00 1b8oA 284 1.07e+01 1b8oA c.56.2.1 33762 2bc4A 211 1.09e+01 1erjA 393 1.10e+01 1erjA b.69.4.1 27660 2a15A 139 1.14e+01 1unnC 115 1.32e+01 d.240.1.1 99680 1geeA 261 1.39e+01 c.2.1.2 90509 1ry9A 145 1.46e+01 d.198.1.1 98094 1zo2A 129 1.57e+01 1ve4A 206 1.59e+01 1oh0A 131 1.61e+01 d.17.4.3 87004 1su8A 636 1.68e+01 e.26.1.2 98999 1xkpC 143 1.69e+01 2agaA 190 1.80e+01 3pmgA 561 1.83e+01 3pmgA c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 35408,35409,35410,41301 1sdjA 310 1.84e+01 d.21.1.2,d.21.1.2 98807,98808 1gnxA 479 1.90e+01 c.1.8.4 76241 1o9gA 250 1.94e+01 c.66.1.29 86692 1qyaA 307 1.95e+01 d.21.1.2,d.21.1.2 104653,104654 1ydwA 362 1.97e+01 1xebA 150 2.01e+01 1nkgA 508 2.16e+01 b.3.1.2,b.18.1.25,b.30.5.10 103859,103860,103861 1rf6A 427 2.17e+01 d.68.2.2 97366 1yirA 408 2.23e+01 1u58A 253 2.24e+01 1wteA 272 2.31e+01 1ikpA 613 2.32e+01 b.29.1.7,d.166.1.1,f.1.5.1 66182,66183,66184 1tiqA 180 2.32e+01 d.108.1.1 107010 1tu1A 148 2.46e+01 d.107.1.3 107316 1mdc 133 2.86e+01 1hmt b.60.1.2 27198 1uxzA 131 2.87e+01 b.18.1.10 100170 1ww7A 160 2.94e+01 1q52A 314 2.98e+01 c.14.1.3 95846 1rkiA 102 3.03e+01 1ztuA 341 3.07e+01 1kt6A 183 3.10e+01 b.60.1.1 84466 1uesA 191 3.26e+01 a.2.11.1,d.44.1.1 107798,107799 1yewA 382 3.29e+01 1zxfA 155 3.30e+01 1v74A 107 3.35e+01 d.243.1.1 100442 1zhxA 438 3.37e+01 1zb9A 143 3.52e+01 1cbs 137 3.61e+01 1hmt b.60.1.2 27201 1gy6A 127 3.61e+01 d.17.4.2 70736 1swxA 209 3.65e+01 a.224.1.1 106075 2f4lA 297 3.67e+01 1xeuA 263 3.82e+01 1esxA 96 3.83e+01 1esxA j.11.1.1 59501 1vprA 374 3.90e+01 1zaiA 363 3.92e+01 1cr5A 189 4.21e+01 1cr5A b.52.2.3,d.31.1.1 26931,38465 1yq2A 1024 4.23e+01 1f3uA 118 4.25e+01 1f3uA b.65.1.1 27521 1f39A 101 4.30e+01 1umuA b.87.1.1 28386 1h6tA 291 4.31e+01 b.1.18.15,c.10.2.1 65686,65687 1pguA 615 4.33e+01 b.69.4.1,b.69.4.1 88069,88070 1wbeA 209 4.56e+01 2sli 679 4.58e+01 2sli b.29.1.9,b.68.1.1 24274,27611 1wdpA 495 4.63e+01 2f6kA 307 4.75e+01 1qqqA 264 4.82e+01 1bkpA d.117.1.1 40931 1lqaA 346 4.88e+01 c.1.7.1 84674 1fobA 334 4.90e+01 c.1.8.3 83255 1u69A 163 4.92e+01 d.32.1.7 107699 1iznA 286 4.99e+01 e.43.1.1 83847 1uvqA 197 5.07e+01 b.1.1.2,d.19.1.1 100062,100063 1fm0D 81 5.08e+01 1fmaD d.15.3.1 37642 1oyc 400 5.17e+01 1oyc c.1.4.1 28603 1f7uA 607 5.21e+01 1bs2A a.27.1.1,c.26.1.1,d.67.2.1 59673,59674,59675 1oe4A 247 5.34e+01 c.18.1.3 86895 1kzfA 230 5.39e+01 d.108.1.3 73354 1vcaA 202 5.53e+01 1vcaA b.1.1.3,b.1.1.4 21649,21685 2g8oA 264 5.57e+01 1gq6A 313 5.63e+01 c.42.1.1 70341 1l3lA 234 5.65e+01 a.4.6.2,d.110.5.1 73541,73542 1vbiA 344 5.83e+01 1oruA 195 5.85e+01 b.58.1.2 93464 1hq0A 295 5.88e+01 1hzgA d.194.1.1 61122 1ttwA 138 5.92e+01 d.198.1.1 107308 2g8mA 264 5.96e+01 1tyjA 170 5.97e+01 1tz9A 367 6.14e+01 c.1.15.6 107466 1vdmA 153 6.17e+01 1q5dA 419 6.32e+01 a.104.1.1 95891 2g3aA 152 6.59e+01 1uv7A 110 6.63e+01 d.67.4.1 100040 1gdhA 320 6.70e+01 1gdhA c.2.1.4,c.23.12.1 30095,31355 2eifA 136 6.73e+01 1bkb b.34.5.2,b.40.4.5 24607,25339 1c0pA 363 6.84e+01 1an9A c.4.1.2,d.16.1.3 30647,37934 2frnA 278 6.97e+01 1o8vA 134 7.00e+01 b.60.1.2 86680 1j0dA 341 7.01e+01 c.79.1.1 83902 1nb9A 147 7.01e+01 b.43.5.1 85515 1tp6A 128 7.03e+01 d.17.4.12 107184 2beiA 170 7.04e+01 1pjhA 280 7.08e+01 c.14.1.3 94761 1z2wA 192 7.20e+01 1xewY 172 7.22e+01 2c78A 405 7.24e+01 1pwxA 254 7.29e+01 c.2.1.2 95262 1wkqA 164 7.50e+01 c.97.1.2 109393 1r7mA 235 7.54e+01 2atrA 138 7.60e+01 1nh2D 121 7.61e+01 a.32.1.1,b.56.1.1 91876,91877 1fhgA 154 7.62e+01 1tlk b.1.1.4 21706 1m1zA 513 7.64e+01 c.26.2.1,d.153.1.1 78457,78458 1i8aA 189 7.66e+01 1i82A b.1.9.2 61951 1g7sA 594 7.80e+01 1g7rA b.43.3.1,b.43.3.1,c.20.1.1,c.37.1.8 25712,25713,31032,32147 1ylxA 103 7.86e+01 1n9eA 787 7.95e+01 b.30.2.1,d.17.2.1,d.17.2.1 91708,91709,91710 2f7tA 227 7.98e+01 2tnfA 156 8.07e+01 2tnfA b.22.1.1 23880 1cseI 71 8.09e+01 1egpA d.40.1.1 38559 1dwkA 156 8.20e+01 1dw9A a.35.1.4,d.72.1.1 17075,39606 1rmg 422 8.25e+01 1rmg b.80.1.3 28029 2foyA 260 8.29e+01 1ni4A 365 8.31e+01 c.36.1.11 85728 1q2lA 939 8.53e+01 1vp4A 425 8.54e+01 1wgzA 510 8.61e+01 1fcqA 350 8.62e+01 c.1.8.9 65006 1tuoA 464 8.64e+01 1g2oA 268 8.64e+01 1b8oA c.56.2.1 60228 1dqeA 137 8.70e+01 1dqeA a.39.2.1 17388 1s50A 259 8.71e+01 1o6vA 466 8.72e+01 b.1.18.15,c.10.2.1 81099,81100 1nnxA 109 8.76e+01 b.40.10.1 92013 1bd3A 243 8.77e+01 1bd3A c.61.1.1 34098 1ur1A 378 8.92e+01 c.1.8.3 99804