# List of top-scoring protein chains for t06-100-30-n_notor2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1zkiA 133 8.37e-08 1vh5A 148 2.55e-07 d.38.1.5 100642 1wluA 136 2.88e-07 1j1yA 136 3.12e-07 d.38.1.5 90776 1o0iA 138 4.30e-07 d.38.1.5 86532 1vpmA 169 4.98e-07 1yliA 153 1.60e-06 2fs2A 151 2.05e-06 1z6bA 154 5.83e-06 1q4uA 151 9.39e-06 d.38.1.5 95828 1ixlA 131 1.48e-05 d.38.1.5 90717 1yocA 147 1.83e-05 2gvhA 288 2.42e-05 1t82A 155 2.24e-04 d.38.1.5 106639 2cyeA 133 3.12e-04 1sh8A 154 5.16e-04 d.38.1.5 105549 1s5uA 138 1.02e-03 d.38.1.1 98573 1z54A 132 1.05e-03 2cwzA 141 1.30e-03 1iq6A 134 3.29e-03 d.38.1.4 76755 2b3nA 159 4.51e-03 2gf6A 135 1.09e-02 2aliA 158 1.29e-02 1lo7A 141 1.72e-02 d.38.1.1 74144 1tbuA 118 3.78e-02 1mkaA 171 6.69e-02 1mkaA d.38.1.2 38543 1c8uA 285 8.78e-02 1c8uA d.38.1.3,d.38.1.3 38547,38548 1xf1A 926 2.00e-01 2bi0A 337 4.04e-01 2essA 248 6.81e-01 1d3cA 686 1.62e+00 1cxlA b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21827,22496,27734,28721 2mprA 421 2.55e+00 2mprA f.4.3.2 43788 1jy1A 464 2.65e+00 d.136.1.3,d.136.1.3 67438,67439 2d1sA 548 2.83e+00 1vemA 516 3.03e+00 1y4wA 518 3.20e+00 1hm9A 468 3.83e+00 b.81.1.4,c.68.1.5 65866,65867 1t94A 459 3.88e+00 d.240.1.1,e.8.1.7 106701,106702 1lnsA 763 4.22e+00 a.40.2.1,b.18.1.13,c.69.1.21 78101,78102,78103 1ux6A 350 4.60e+00 b.29.1.16,g.75.1.1 100145,100146 1u94A 356 4.80e+00 c.37.1.11,d.48.1.1 107743,107744 2cunA 410 4.85e+00 1pn2A 280 5.01e+00 d.38.1.4,d.38.1.4 94930,94931 1g5hA 454 5.24e+00 1g5hA c.51.1.1,d.104.1.1 60270,60271 2fuqA 747 5.48e+00 1t5oA 351 5.68e+00 c.124.1.5 106459 1k8wA 327 6.00e+00 b.122.1.1,d.265.1.2 83094,90388 1r6vA 671 6.46e+00 1cs6A 382 6.46e+00 1cs6A b.1.1.4,b.1.1.4,b.1.1.4,b.1.1.4 21760,21761,21762,21763 1vns 609 6.51e+00 1vns a.111.1.3 19061 1mxgA 435 6.82e+00 b.71.1.1,c.1.8.1 85193,85194 1ja1A 622 7.01e+00 1amoA b.43.4.1,c.23.5.2,c.25.1.4 62803,62804,62805 1te5A 257 7.30e+00 d.153.1.1 106795 1m15A 357 7.33e+00 a.83.1.1,d.128.1.2 78368,78369 1xovA 326 7.57e+00 1hq0A 295 8.45e+00 1hzgA d.194.1.1 61122 1ntyA 311 8.64e+00 a.87.1.1,b.55.1.1 103873,103874 1qtqA 553 8.91e+00 1gtrA b.53.1.2,c.26.1.1 26940,31579 1uvjA 664 9.22e+00 e.8.1.6 100045 1jsdA 319 9.31e+00 b.19.1.2 63258 1xkpC 143 9.77e+00 1zxxA 319 9.98e+00 1mrzA 293 1.03e+01 b.43.5.1,c.26.1.3 91452,91453 1h09A 338 1.11e+01 b.109.1.1,c.1.8.8 83420,83421 1hx0A 496 1.16e+01 b.71.1.1,c.1.8.1 61346,61347 2bcgG 453 1.18e+01 1fmtA 314 1.20e+01 1fmtA b.46.1.1,c.65.1.1 25758,34174 2g9zA 348 1.25e+01 2bibA 547 1.30e+01 1yljA 263 1.36e+01 1uteA 313 1.37e+01 1uteA d.159.1.1 42078 1mdbA 539 1.43e+01 e.23.1.1 79008 1goiA 499 1.46e+01 b.72.2.1,c.1.8.5,d.26.3.1 65413,65414,65415 1qxyA 252 1.54e+01 d.127.1.1 96565 1nofA 383 1.55e+01 b.71.1.2,c.1.8.3 92020,92021 1fxlA 167 1.56e+01 1b7fA d.58.7.1,d.58.7.1 39183,39184 2gdnA 267 1.56e+01 1wzlA 585 1.59e+01 1dfmA 223 1.64e+01 1d2iA c.52.1.5 33295 1auiB 169 1.65e+01 1auiB a.39.1.5 17325 1xezA 721 1.67e+01 1rtqA 299 1.71e+01 c.56.5.4 97819 1ylhA 560 1.74e+01 1y0zA 330 1.76e+01 1jndA 420 1.77e+01 c.1.8.5,d.26.3.1 71757,71758 1rqpA 299 1.85e+01 b.141.1.1,c.132.1.1 97754,97755 1aym1 285 1.90e+01 1aym1 1qhdA 398 1.91e+01 1qhdA a.115.1.2,b.19.1.1 63324,63325 1f60A 458 1.95e+01 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25705,25745,32140 1p2hA 571 2.01e+01 a.138.1.3,c.3.1.4,d.168.1.1 93930,93931,93932 1pp0A 199 2.07e+01 d.103.1.1 104211 1twiA 434 2.15e+01 b.49.2.3,c.1.6.1 107399,107400 1auk 489 2.23e+01 1auk c.76.1.2 35030 1h3nA 878 2.25e+01 a.27.1.1,b.51.1.1,c.26.1.1 76641,76642,76643 1ve3A 227 2.29e+01 1d5tA 433 2.30e+01 1gnd c.3.1.3,d.16.1.6 30422,37986 1xl7A 612 2.33e+01 1ga6A 372 2.40e+01 1ga1A c.41.1.2 32556 1kapP 479 2.41e+01 1sat b.80.7.1,d.92.1.6 28012,40298 1r1a1 287 2.43e+01 1aym1 1zxmA 400 2.49e+01 1upaA 573 2.55e+01 c.31.1.3,c.36.1.5,c.36.1.9 99714,99715,99716 2a5hA 416 2.61e+01 1euvA 221 2.62e+01 1euvA d.3.1.7 37133 1cr5A 189 2.65e+01 1cr5A b.52.2.3,d.31.1.1 26931,38465 1e6yB 433 2.71e+01 1mroB a.89.1.1,d.58.31.2 18535,39453 3pmgA 561 2.75e+01 3pmgA c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 35408,35409,35410,41301 1qksA 567 2.84e+01 1qksA a.3.1.2,b.70.2.1 15951,27710 1rcqA 357 2.84e+01 b.49.2.2,c.1.6.1 104882,104883 1uasA 362 2.86e+01 b.71.1.1,c.1.8.1 88388,88389 1wb9A 800 2.88e+01 1ogsA 497 2.91e+01 b.71.1.2,c.1.8.3 86997,86998 1szqA 483 3.01e+01 e.44.1.1 99045 1jz8A 1023 3.10e+01 b.1.4.1,b.1.4.1,b.18.1.5,b.30.5.1,c.1.8.3 67830,67831,67832,67833,67834 1uok 558 3.11e+01 1uok b.71.1.1,c.1.8.1 27801,28788 1vlyA 338 3.14e+01 b.44.2.1,d.250.1.1 108871,108872 1sdjA 310 3.17e+01 d.21.1.2,d.21.1.2 98807,98808 2a9dA 372 3.21e+01 1geeA 261 3.24e+01 c.2.1.2 90509 1ghpA 258 3.25e+01 1btl e.3.1.1 60520 1ci9A 392 3.29e+01 e.3.1.1 64767 1spxA 278 3.41e+01 c.2.1.2 98958 1wvfA 520 3.43e+01 3tdt 274 3.45e+01 3tdt b.81.1.2 28053 1zc6A 305 3.46e+01 1lshA 1056 3.51e+01 a.118.4.1,f.7.1.1,f.7.1.1 74242,74243,74244 2fnuA 375 3.52e+01 7taa 478 3.61e+01 7taa b.71.1.1,c.1.8.1 27778,28765 2c07A 285 3.63e+01 1xp8A 366 3.67e+01 1w61A 414 3.67e+01 1zd3A 555 3.74e+01 1o88A 353 3.76e+01 b.80.1.1 81178 1gpiA 431 3.78e+01 b.29.1.10 65450 1qyaA 307 3.83e+01 d.21.1.2,d.21.1.2 104653,104654 1r8eA 278 3.85e+01 a.6.1.3,d.60.1.1 104843,104844 1wgzA 510 3.86e+01 2blnA 305 3.89e+01 1ztuA 341 3.91e+01 2bb6A 414 3.98e+01 1lla 628 4.06e+01 1lla a.85.1.1,a.86.1.1,b.1.18.3 18485,18496,21861 1bsg 266 4.06e+01 1btl e.3.1.1 42729 1h30A 422 4.14e+01 b.29.1.4,b.29.1.4 76604,76605 1tlyA 278 4.15e+01 f.4.6.1 107143 1uylA 236 4.20e+01 d.122.1.1 108147 1y8qB 640 4.25e+01 1ig0A 319 4.33e+01 1ig0A b.82.6.1,c.100.1.1 62354,62355 1uh5A 329 4.34e+01 c.2.1.2 107840 1ht6A 405 4.34e+01 b.71.1.1,c.1.8.1 83629,83630 1cbs 137 4.35e+01 1hmt b.60.1.2 27201 1xeoA 168 4.36e+01 2gr8A 99 4.39e+01 1u1iA 392 4.40e+01 c.2.1.3,d.81.1.3 107582,107583 2cn3A 737 4.41e+01 1epwA 1290 4.46e+01 b.29.1.6,b.42.4.2,d.92.1.7,h.4.2.1 24269,25614,40305,45785 1p3dA 475 4.55e+01 c.5.1.1,c.59.1.1,c.72.2.1 87728,87729,87730 1jmxA 494 4.64e+01 a.3.1.7,a.3.1.7,b.1.18.14,b.1.18.14,b.61.4.1 66901,66902,66903,66904,66905 1d3vA 323 4.66e+01 1d3vA c.42.1.1 32559 1r2jA 366 4.75e+01 a.29.3.1,e.6.1.1 96869,96870 1wmdA 434 4.76e+01 b.18.1.20,c.41.1.1 109408,109409 1o0xA 262 4.80e+01 d.127.1.1 80755 1evlA 401 4.87e+01 1qf6A c.51.1.1,d.104.1.1 33202,40751 1t1uA 639 4.97e+01 1erjA 393 4.97e+01 1erjA b.69.4.1 27660 1djxA 624 4.99e+01 1djxB a.39.1.7,b.7.1.1,c.1.18.1 17342,23159,29587 1r64A 481 5.05e+01 b.18.1.20,c.41.1.1 97140,97141 1w8oA 601 5.07e+01 1ve4A 206 5.10e+01 1a4iA 301 5.11e+01 1a4iA c.2.1.7,c.58.1.2 30278,33926 1kv7A 488 5.12e+01 b.6.1.3,b.6.1.3,b.6.1.3 68873,68874,68875 2gdzA 267 5.19e+01 1j5xA 342 5.23e+01 c.80.1.1 71591 1yqsA 349 5.27e+01 1tzjA 338 5.27e+01 1gpeA 587 5.33e+01 1gpeA c.3.1.2,d.16.1.1 30387,37951 1v4aA 440 5.36e+01 a.24.16.4,d.218.1.9 108350,108351 1s95A 333 5.37e+01 d.159.1.3 105375 1bhe 376 5.38e+01 1bhe b.80.1.3 28030 1bu8A 452 5.43e+01 1gpl b.12.1.2,c.69.1.19 23647,34795 1txqA 93 5.50e+01 1e9rA 437 5.52e+01 c.37.1.11 64827 1oc2A 348 5.60e+01 c.2.1.2 92765 1hf2A 210 5.63e+01 1hf2A b.80.3.1,c.102.1.1 60992,60993 1thm 279 5.65e+01 1gci c.41.1.1 32544 1xksA 450 5.67e+01 1g24A 211 5.69e+01 1g24A d.166.1.1 42270 1e3dB 542 5.69e+01 1h2rL e.18.1.1 59189 2basA 431 5.72e+01 1yymG 313 5.82e+01 1ewkA 490 5.82e+01 1ewkA c.93.1.1 35712 1v6sA 390 5.86e+01 c.86.1.1 100424 1nqeA 594 5.91e+01 f.4.3.3 86027 1vjjA 692 6.01e+01 b.1.18.9,b.1.5.1,b.1.5.1,d.3.1.4 100814,100815,100816,100817 3chbD 104 6.04e+01 3chbD b.40.2.1 24970 1sc6A 404 6.07e+01 1eceA 358 6.10e+01 1eceA c.1.8.3 28813 1cb8A 678 6.16e+01 1cb8A a.102.3.2,b.24.1.1,b.30.5.2 18849,23898,24422 1xypA 190 6.22e+01 1axkA b.29.1.11 24327 1uesA 191 6.26e+01 a.2.11.1,d.44.1.1 107798,107799 1s1dA 331 6.27e+01 b.67.3.1 98344 1rp4A 389 6.30e+01 a.227.1.1 105027 1z47A 355 6.32e+01 2bvlA 543 6.32e+01 1fepA 724 6.36e+01 1fepA f.4.3.3 43808 1gsoA 431 6.41e+01 1gsoA b.84.2.1,c.30.1.1,d.142.1.2 28240,31647,41492 1mtyD 512 6.51e+01 1mhyD a.25.1.2 16742 2fg1A 158 6.62e+01 1k77A 260 6.62e+01 c.1.15.5 72096 1s3rA 535 6.64e+01 1uwcA 261 6.64e+01 c.69.1.17 100101 1u4bA 580 6.66e+01 c.55.3.5,e.8.1.1 107664,107665 1l8aA 886 6.66e+01 c.36.1.10,c.36.1.6,c.48.1.1 73677,73678,73679 1djrD 103 6.73e+01 3chbD b.40.2.1 24865 1kqfA 1015 6.79e+01 b.52.2.2,c.81.1.1 72871,72872 1x1iA 752 6.85e+01 1i7dA 659 6.85e+01 1d6mA e.10.1.1 61886 2dpmA 284 6.90e+01 2dpmA c.66.1.28 34246 2tpt 440 6.92e+01 1brwA a.46.2.1,c.27.1.1,d.41.3.1 17759,31623,38621 1jmcA 246 6.95e+01 1jmcA b.40.4.3,b.40.4.3 25300,25301 1q7fA 286 6.99e+01 b.68.9.1 96036 1hn0A 1021 7.03e+01 a.102.3.2,b.18.1.17,b.24.1.1,b.30.5.2 83616,83617,83618,83619 1ldjA 760 7.05e+01 a.4.5.34,a.118.17.1,e.40.1.1 73847,73848,73849 1oaoC 729 7.18e+01 e.26.1.3 86746 1fxoA 293 7.19e+01 1g0rA c.68.1.6 34524 1se8A 301 7.20e+01 b.40.4.3 105448 1hi9A 274 7.21e+01 1hi9A c.99.1.1 61063 1gx5A 536 7.22e+01 e.8.1.4 70682 1q52A 314 7.25e+01 c.14.1.3 95846 1a0cA 438 7.27e+01 1a0cA c.1.15.3 29529 1upiA 225 7.28e+01 b.82.1.1 99757 1yewA 382 7.36e+01 1u04A 771 7.49e+01 b.34.14.1,c.55.3.10 107539,107540 2cvhA 220 7.53e+01 1qe3A 489 7.59e+01 2bce c.69.1.1 34630 1zbpA 273 7.60e+01 1llfA 534 7.62e+01 c.69.1.17 78094 1e4yA 214 7.64e+01 1zin c.37.1.1,g.41.2.1 31901,45181 1p0zA 131 7.69e+01 d.110.6.1 93882 1pguA 615 7.70e+01 b.69.4.1,b.69.4.1 88069,88070 2gvkA 317 7.81e+01 1qh4A 380 7.83e+01 1qh4A a.83.1.1,d.128.1.2 18462,41197 2f7tA 227 7.83e+01 1c7qA 445 7.88e+01 2pgi c.80.1.2 35307 1qhfA 240 7.93e+01 1qhfA c.60.1.1 33960 1xrsA 516 7.96e+01 1qusA 322 7.98e+01 1ltm d.2.1.6 36991 1wdjA 187 8.01e+01 2d1eA 248 8.01e+01 1b77A 228 8.10e+01 1b77A d.131.1.2,d.131.1.2 41362,41363 1sffA 426 8.10e+01 c.67.1.4 105482 1g9gA 629 8.12e+01 a.102.1.2 83279 1gnxA 479 8.33e+01 c.1.8.4 76241 1ikpA 613 8.35e+01 b.29.1.7,d.166.1.1,f.1.5.1 66182,66183,66184 2a74A 643 8.38e+01 1w6sA 599 8.53e+01 1r17A 343 8.53e+01 b.2.3.4,b.2.3.4 96796,96797 1cb0A 283 8.56e+01 1cb0A c.56.2.1 33790 1va6A 518 8.58e+01 1zaiA 363 8.58e+01 1rz2A 254 8.68e+01 b.100.1.1 105130 1uv7A 110 8.68e+01 d.67.4.1 100040 1at0 145 8.73e+01 1at0 b.86.1.1 28374 1c7sA 858 8.74e+01 1qba b.1.18.2,b.2.2.3,c.1.8.6,d.92.2.1 21812,22408,29011,40410 1ppjB 439 8.77e+01 d.185.1.1,d.185.1.1 104254,104255 2giyA 191 8.78e+01 1g6aA 271 8.79e+01 1btl e.3.1.1 42704 1i5pA 633 8.83e+01 1i5pA b.18.1.3,b.77.2.1,f.1.3.1 61817,61818,61819 2aq5A 402 8.88e+01 1tiqA 180 8.90e+01 d.108.1.1 107010 1w99A 558 8.94e+01