# List of top-scoring protein chains for t06-100-30-dssp-ebghstl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1zkiA 133 1.11e-19 1o0iA 138 7.25e-19 d.38.1.5 86532 1wluA 136 2.81e-18 1vh5A 148 2.97e-18 d.38.1.5 100642 1j1yA 136 4.05e-18 d.38.1.5 90776 2fs2A 151 9.68e-18 1yliA 153 2.75e-17 1vpmA 169 3.11e-17 1q4uA 151 2.76e-15 d.38.1.5 95828 2gvhA 288 3.36e-15 1z6bA 154 3.73e-15 1yocA 147 1.87e-14 1ixlA 131 2.20e-14 d.38.1.5 90717 1t82A 155 1.25e-13 d.38.1.5 106639 2cyeA 133 4.22e-13 1sh8A 154 1.46e-11 d.38.1.5 105549 1s5uA 138 4.59e-11 d.38.1.1 98573 1z54A 132 1.09e-10 2gf6A 135 2.00e-09 2b3nA 159 4.39e-09 2aliA 158 1.46e-08 2cwzA 141 4.93e-08 1lo7A 141 1.79e-07 d.38.1.1 74144 1iq6A 134 2.17e-07 d.38.1.4 76755 1tbuA 118 7.00e-07 1mkaA 171 7.74e-07 1mkaA d.38.1.2 38543 2essA 248 5.91e-06 1c8uA 285 1.13e-05 1c8uA d.38.1.3,d.38.1.3 38547,38548 2bi0A 337 2.62e-05 1yycA 174 8.32e-03 1pn2A 280 4.15e-02 d.38.1.4,d.38.1.4 94930,94931 2bm3A 166 3.78e-01 1sdjA 310 4.19e-01 d.21.1.2,d.21.1.2 98807,98808 1tcvA 287 6.94e-01 1qyaA 307 8.37e-01 d.21.1.2,d.21.1.2 104653,104654 1b8oA 284 1.68e+00 1b8oA c.56.2.1 33762 1cb0A 283 1.76e+00 1cb0A c.56.2.1 33790 2bc4A 211 1.98e+00 2f4lA 297 2.01e+00 1geeA 261 2.13e+00 c.2.1.2 90509 1s1fA 406 2.17e+00 1zhxA 438 2.30e+00 1te5A 257 2.34e+00 d.153.1.1 106795 1lshA 1056 2.50e+00 a.118.4.1,f.7.1.1,f.7.1.1 74242,74243,74244 1b06A 210 3.07e+00 1avmA a.2.11.1,d.44.1.1 15740,38737 1xkpC 143 3.25e+00 2bf6A 449 3.32e+00 2eifA 136 3.48e+00 1bkb b.34.5.2,b.40.4.5 24607,25339 2f6kA 307 3.74e+00 1o9gA 250 3.94e+00 c.66.1.29 86692 1uvqA 197 4.35e+00 b.1.1.2,d.19.1.1 100062,100063 1ry9A 145 4.38e+00 d.198.1.1 98094 2gr8A 99 4.74e+00 1w2wA 211 4.74e+00 c.124.1.5 109130 1yewA 382 4.90e+00 1g24A 211 5.20e+00 1g24A d.166.1.1 42270 1k4nA 192 5.84e+00 d.32.1.5 72059 1f39A 101 6.15e+00 1umuA b.87.1.1 28386 1tiqA 180 6.30e+00 d.108.1.1 107010 2a15A 139 6.40e+00 1w9hA 427 6.53e+00 1ve4A 206 6.53e+00 1zxxA 319 6.62e+00 1rmg 422 6.63e+00 1rmg b.80.1.3 28029 1su8A 636 6.97e+00 e.26.1.2 98999 1nnxA 109 7.35e+00 b.40.10.1 92013 1zo2A 129 7.99e+00 1g7sA 594 8.67e+00 1g7rA b.43.3.1,b.43.3.1,c.20.1.1,c.37.1.8 25712,25713,31032,32147 1g2oA 268 9.43e+00 1b8oA c.56.2.1 60228 1vrmA 325 9.49e+00 1ydwA 362 9.60e+00 1wteA 272 9.69e+00 2cu6A 103 1.04e+01 1erjA 393 1.05e+01 1erjA b.69.4.1 27660 1d2oA 187 1.05e+01 1d2oA b.3.5.1,b.3.5.1 22625,22626 2fimA 276 1.07e+01 1unnC 115 1.08e+01 d.240.1.1 99680 1h3nA 878 1.12e+01 a.27.1.1,b.51.1.1,c.26.1.1 76641,76642,76643 1cr5A 189 1.14e+01 1cr5A b.52.2.3,d.31.1.1 26931,38465 1txqA 93 1.16e+01 1q52A 314 1.18e+01 c.14.1.3 95846 1nkgA 508 1.20e+01 b.3.1.2,b.18.1.25,b.30.5.10 103859,103860,103861 1xeuA 263 1.22e+01 1o8vA 134 1.24e+01 b.60.1.2 86680 1u69A 163 1.33e+01 d.32.1.7 107699 1g38A 393 1.38e+01 2admA c.66.1.27 60235 1pvtA 238 1.38e+01 c.74.1.1 95189 1uv7A 110 1.42e+01 d.67.4.1 100040 1ex2A 189 1.46e+01 1ex2A c.51.4.2 33225 1fm0D 81 1.57e+01 1fmaD d.15.3.1 37642 2azpA 318 1.59e+01 1kt6A 183 1.59e+01 b.60.1.1 84466 1je0A 236 1.72e+01 c.56.2.1 66581 1t4wA 196 1.75e+01 b.2.5.2 106427 1n9eA 787 1.77e+01 b.30.2.1,d.17.2.1,d.17.2.1 91708,91709,91710 1pwxA 254 1.79e+01 c.2.1.2 95262 1oxdA 227 1.81e+01 d.22.1.1 93687 2f7tA 227 1.82e+01 1v74A 107 1.83e+01 d.243.1.1 100442 1oh0A 131 1.92e+01 d.17.4.3 87004 1yq2A 1024 1.94e+01 1ykwA 435 1.99e+01 1im5A 180 2.01e+01 c.33.1.3 66211 1zmtA 254 2.10e+01 1uesA 191 2.18e+01 a.2.11.1,d.44.1.1 107798,107799 1xebA 150 2.21e+01 1i76A 163 2.25e+01 1hfc d.92.1.11 61877 1dqeA 137 2.26e+01 1dqeA a.39.2.1 17388 1ur1A 378 2.27e+01 c.1.8.3 99804 1gy6A 127 2.36e+01 d.17.4.2 70736 1n9pA 207 2.39e+01 b.1.18.16 80343 1rf6A 427 2.43e+01 d.68.2.2 97366 1n2sA 299 2.43e+01 c.2.1.2 79857 2awkA 228 2.45e+01 1oruA 195 2.46e+01 b.58.1.2 93464 1ir21 140 2.46e+01 1w7lA 422 2.49e+01 c.67.1.1 109226 1pjhA 280 2.49e+01 c.14.1.3 94761 1ihjA 98 2.50e+01 1pdr b.36.1.1 62382 1w66A 232 2.52e+01 1id2A 106 2.54e+01 1aac b.6.1.1 62288 1ej6D 418 2.56e+01 i.7.1.1 45970 2foyA 260 2.57e+01 1vbiA 344 2.63e+01 2ganA 190 2.64e+01 1itbB 315 2.68e+01 1itbB b.1.1.4,b.1.1.4,b.1.1.4 21720,21721,21722 1swxA 209 2.70e+01 a.224.1.1 106075 1aym2 261 2.71e+01 1aym2 1yvoA 172 2.73e+01 1d7oA 297 2.78e+01 1enp c.2.1.2 29907 1zb9A 143 2.85e+01 2hgsA 474 2.87e+01 2hgsA c.30.1.4,d.142.1.6 31722,75997 1j1bA 420 2.89e+01 d.144.1.7 90758 1xfrA 128 2.96e+01 1xgsA 295 3.01e+01 1bn5 a.4.5.25,d.127.1.1 16216,41153 1gk8I 140 3.10e+01 d.73.1.1 65242 1xp8A 366 3.16e+01 1kzfA 230 3.18e+01 d.108.1.3 73354 1vs0A 310 3.18e+01 1iakA 199 3.19e+01 1iakA b.1.1.2,d.19.1.1 21625,38199 1n82A 331 3.19e+01 c.1.8.3 91703 1w4rA 195 3.22e+01 1gnxA 479 3.27e+01 c.1.8.4 76241 1tuoA 464 3.30e+01 1j98A 157 3.30e+01 1j98A d.185.1.2 62755 1wbeA 209 3.33e+01 1tyjA 170 3.38e+01 1w6nA 134 3.39e+01 1yvrA 538 3.39e+01 1wz8A 264 3.41e+01 1ztuA 341 3.46e+01 1ujnA 348 3.47e+01 e.22.1.1 99460 2fg1A 158 3.49e+01 1fhgA 154 3.51e+01 1tlk b.1.1.4 21706 1gq6A 313 3.53e+01 c.42.1.1 70341 1ifc 132 3.54e+01 b.60.1.2 27173 1ww7A 160 3.57e+01 1dabA 539 3.62e+01 1dabA b.80.1.7 28049 1tu1A 148 3.70e+01 d.107.1.3 107316 2fqxA 318 3.71e+01 1hq0A 295 3.82e+01 1hzgA d.194.1.1 61122 1cbs 137 3.91e+01 1hmt b.60.1.2 27201 1tmxA 293 4.11e+01 1xk5A 204 4.18e+01 1qexA 288 4.23e+01 1qexA b.32.1.1 24425 2f23A 156 4.25e+01 1ab8A 220 4.27e+01 1azsA d.58.29.1 39414 2g6yA 217 4.28e+01 2c78A 405 4.28e+01 1o97C 264 4.30e+01 c.26.2.3 81232 1n08A 163 4.30e+01 b.43.5.1 79730 1vcaA 202 4.37e+01 1vcaA b.1.1.3,b.1.1.4 21649,21685 2bo9B 222 4.44e+01 1nh8A 304 4.57e+01 c.94.1.1,d.58.5.3 80507,80508 1xubA 298 4.59e+01 1u94A 356 4.59e+01 c.37.1.11,d.48.1.1 107743,107744 1oe4A 247 4.63e+01 c.18.1.3 86895 1gai 472 4.66e+01 1ayx a.102.1.1 18819 1b5qA 472 4.66e+01 1b37B c.3.1.2,d.16.1.5 30404,37968 1l2tA 235 4.68e+01 c.37.1.12 73514 1qv1A 195 4.78e+01 a.39.1.5 96347 1xewY 172 4.80e+01 1mdc 133 4.83e+01 1hmt b.60.1.2 27198 1jztA 246 4.89e+01 c.104.1.1 63319 1i8aA 189 5.05e+01 1i82A b.1.9.2 61951 1mpp 361 5.06e+01 2rmpA b.50.1.2 26856 1iznA 286 5.07e+01 e.43.1.1 83847 1n4wA 504 5.14e+01 c.3.1.2,d.16.1.1 91676,91677 1nzyA 269 5.15e+01 1nzyA c.14.1.3 30903 1rewA 114 5.16e+01 g.17.1.2 97334 1whvA 100 5.16e+01 1l0wA 580 5.17e+01 b.40.4.1,d.74.4.1,d.104.1.1 73426,73427,73428 1cs6A 382 5.26e+01 1cs6A b.1.1.4,b.1.1.4,b.1.1.4,b.1.1.4 21760,21761,21762,21763 1zaiA 363 5.36e+01 1zyoA 191 5.41e+01 2atrA 138 5.48e+01 2bwqA 129 5.56e+01 1vdwA 254 5.61e+01 e.7.1.1 100569 1cfb 205 5.63e+01 1cfb b.1.2.1,b.1.2.1 21991,21992 1fiuA 286 5.66e+01 1fiuA c.52.1.10 33317 2beiA 170 5.77e+01 2g3aA 152 5.78e+01 1qysA 106 5.89e+01 k.41.1.1 96603 2b69A 343 5.92e+01 2a8yA 270 5.93e+01 2gzqA 200 5.97e+01 1esxA 96 5.97e+01 1esxA j.11.1.1 59501 1k77A 260 6.04e+01 c.1.15.5 72096 1oyc 400 6.13e+01 1oyc c.1.4.1 28603 1iz6A 138 6.17e+01 b.34.5.2,b.40.4.5 76976,76977 1ikpA 613 6.20e+01 b.29.1.7,d.166.1.1,f.1.5.1 66182,66183,66184 2a84A 300 6.21e+01 1r4vA 171 6.22e+01 a.197.1.1 97049 1rkiA 102 6.23e+01 1qgvA 142 6.23e+01 1qgvA c.47.1.8 33056 1jb7A 495 6.24e+01 1otcA b.40.4.3,b.40.4.3,b.40.4.3 62836,62837,62838 1fqtA 112 6.31e+01 1fqtA b.33.1.1 24441 1kutA 230 6.37e+01 d.143.1.1 73017 1n4xH 120 6.38e+01 b.1.1.1 85324 1vjzA 341 6.52e+01 c.1.8.3 100838 1r8gA 372 6.54e+01 d.128.1.3 104845 1sflA 238 6.57e+01 1vk3A 615 6.61e+01 d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1 100846,100847,100848,100849 2f96A 224 6.67e+01 1cseI 71 6.71e+01 1egpA d.40.1.1 38559 1bd0A 388 6.74e+01 1bd0A b.49.2.2,c.1.6.1 26480,28642 1fvkA 189 6.74e+01 1fvkA c.47.1.13 90351 1fobA 334 6.78e+01 c.1.8.3 83255 1o6vA 466 6.83e+01 b.1.18.15,c.10.2.1 81099,81100 2g8oA 264 6.89e+01 1ttwA 138 6.89e+01 d.198.1.1 107308 1wqaA 455 7.01e+01 1zowA 313 7.02e+01 2aq4A 434 7.05e+01 1sfdA 105 7.08e+01 b.6.1.1 105480 1rxyA 253 7.08e+01 c.56.2.1 98065 1am2 199 7.09e+01 1am2 b.86.1.2 28381 1vk8A 106 7.11e+01 d.58.48.1 108636 2ae6A 166 7.12e+01 1rc6A 261 7.16e+01 b.82.1.11 97287 1ns5A 155 7.25e+01 c.116.1.3 80705 1wdjA 187 7.35e+01 1wtaA 275 7.38e+01 1dwkA 156 7.39e+01 1dw9A a.35.1.4,d.72.1.1 17075,39606 1uh5A 329 7.47e+01 c.2.1.2 107840 1j8bA 112 7.57e+01 d.222.1.1 77101 1q2yA 140 7.58e+01 d.108.1.1 95655 1q5dA 419 7.61e+01 a.104.1.1 95891 2fm8A 135 7.86e+01 1xi1A 575 7.90e+01 2ftbA 125 8.00e+01 3pmgA 561 8.04e+01 3pmgA c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 35408,35409,35410,41301 1x1nA 524 8.07e+01 1x3kA 152 8.07e+01 1vprA 374 8.10e+01 1s50A 259 8.13e+01 1xkrA 206 8.23e+01 1q2lA 939 8.31e+01 2ajtA 500 8.35e+01 1fh9A 312 8.47e+01 1taxA c.1.8.3 28913 1qnrA 344 8.48e+01 1qnoA c.1.8.3 28834 1t0bA 252 8.52e+01 c.23.16.6 106199 1zu4A 320 8.52e+01 1n40A 396 8.56e+01 a.104.1.1 79977 1pguA 615 8.62e+01 b.69.4.1,b.69.4.1 88069,88070 1q42A 201 8.65e+01 d.17.4.2 95776 1m1zA 513 8.73e+01 c.26.2.1,d.153.1.1 78457,78458 1ni4A 365 8.74e+01 c.36.1.11 85728 1xocA 520 8.81e+01 1jyaA 130 8.84e+01 d.198.1.1 67453 1ex0A 731 8.85e+01 b.1.18.9,b.1.5.1,b.1.5.1,d.3.1.4 90465,90466,90467,90468 1v7zA 260 8.87e+01 c.125.1.1 100488 2hvm 273 8.87e+01 1cnv c.1.8.5 28985 1tzjA 338 8.88e+01 1svdM 110 8.93e+01 1zj8A 566 8.94e+01 1tr0A 108 8.94e+01 d.58.4.4 107261 1lyvA 306 8.95e+01 c.45.1.2 74348 1dl5A 317 8.99e+01 1dl5A c.66.1.7,d.197.1.1 64720,64721