# List of top-scoring protein chains for t06-100-30-bys-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1zkiA 133 2.20e-18 1o0iA 138 8.11e-18 d.38.1.5 86532 2fs2A 151 2.30e-17 1wluA 136 3.43e-17 1j1yA 136 5.03e-17 d.38.1.5 90776 1vpmA 169 1.17e-16 1vh5A 148 3.35e-16 d.38.1.5 100642 1yliA 153 1.26e-15 1ixlA 131 5.02e-14 d.38.1.5 90717 1z6bA 154 7.19e-14 2gvhA 288 1.09e-13 1q4uA 151 2.49e-13 d.38.1.5 95828 1yocA 147 1.05e-12 2cyeA 133 2.49e-12 1t82A 155 1.07e-11 d.38.1.5 106639 1sh8A 154 1.32e-11 d.38.1.5 105549 1s5uA 138 1.21e-09 d.38.1.1 98573 1z54A 132 2.50e-09 2b3nA 159 3.22e-09 2cwzA 141 2.70e-08 2gf6A 135 2.88e-08 1iq6A 134 8.38e-08 d.38.1.4 76755 2aliA 158 3.16e-07 1lo7A 141 4.01e-07 d.38.1.1 74144 1tbuA 118 7.37e-06 1mkaA 171 5.08e-05 1mkaA d.38.1.2 38543 1c8uA 285 1.09e-04 1c8uA d.38.1.3,d.38.1.3 38547,38548 2essA 248 2.15e-04 2bi0A 337 1.14e-03 1pn2A 280 1.46e-02 d.38.1.4,d.38.1.4 94930,94931 1yycA 174 3.57e-02 2bf6A 449 2.96e-01 1rf6A 427 5.67e-01 d.68.2.2 97366 1s1fA 406 7.31e-01 1fm0D 81 1.10e+00 1fmaD d.15.3.1 37642 1tiqA 180 2.05e+00 d.108.1.1 107010 1g87A 614 2.78e+00 a.102.1.2,b.2.2.2 83275,83276 1zo2A 129 2.95e+00 1b06A 210 3.01e+00 1avmA a.2.11.1,d.44.1.1 15740,38737 1su8A 636 3.04e+00 e.26.1.2 98999 1txqA 93 3.07e+00 1qyaA 307 3.21e+00 d.21.1.2,d.21.1.2 104653,104654 1vcaA 202 3.56e+00 1vcaA b.1.1.3,b.1.1.4 21649,21685 1h3nA 878 4.31e+00 a.27.1.1,b.51.1.1,c.26.1.1 76641,76642,76643 1xkpC 143 4.57e+00 2bm3A 166 4.92e+00 1cbs 137 5.47e+00 1hmt b.60.1.2 27201 2f4lA 297 6.27e+00 1gmeA 151 7.26e+00 b.15.1.1 65305 2cb2A 318 8.32e+00 1swxA 209 8.39e+00 a.224.1.1 106075 1unnC 115 8.45e+00 d.240.1.1 99680 2gzqA 200 8.62e+00 1wbeA 209 8.78e+00 1x8qA 184 9.01e+00 1ry9A 145 9.11e+00 d.198.1.1 98094 2gr8A 99 9.24e+00 1te5A 257 9.42e+00 d.153.1.1 106795 2as9A 210 9.68e+00 1t0yA 122 9.69e+00 d.15.1.1 99066 2fimA 276 9.92e+00 1nnxA 109 9.95e+00 b.40.10.1 92013 1oh0A 131 1.00e+01 d.17.4.3 87004 1b5qA 472 1.06e+01 1b37B c.3.1.2,d.16.1.5 30404,37968 1o9yA 84 1.06e+01 b.139.1.1 92692 1d2oA 187 1.06e+01 1d2oA b.3.5.1,b.3.5.1 22625,22626 1k4nA 192 1.07e+01 d.32.1.5 72059 1josA 128 1.09e+01 d.52.7.1 84191 1j1lA 290 1.11e+01 b.82.1.12 90766 1pm1X 180 1.12e+01 b.60.1.1 104189 2a15A 139 1.16e+01 1u69A 163 1.20e+01 d.32.1.7 107699 1qv1A 195 1.21e+01 a.39.1.5 96347 2fl4A 149 1.23e+01 1lshA 1056 1.24e+01 a.118.4.1,f.7.1.1,f.7.1.1 74242,74243,74244 1ny4A 82 1.27e+01 b.40.4.5 92316 1yirA 408 1.29e+01 1sdjA 310 1.31e+01 d.21.1.2,d.21.1.2 98807,98808 1tp6A 128 1.34e+01 d.17.4.12 107184 1snnA 227 1.36e+01 d.115.1.2 105821 1l1qA 186 1.40e+01 c.61.1.1 77653 2sli 679 1.45e+01 2sli b.29.1.9,b.68.1.1 24274,27611 1ic6A 279 1.47e+01 1gci c.41.1.1 62257 1l0wA 580 1.58e+01 b.40.4.1,d.74.4.1,d.104.1.1 73426,73427,73428 1ww7A 160 1.60e+01 1zxxA 319 1.68e+01 1n67A 359 1.72e+01 b.2.3.4,b.2.3.4 85354,85355 1bj7 156 1.74e+01 1bj7 b.60.1.1 27113 1whvA 100 1.74e+01 1vjzA 341 1.75e+01 c.1.8.3 100838 1zxfA 155 1.77e+01 1xdnA 277 1.77e+01 2g8oA 264 1.84e+01 2awkA 228 1.88e+01 1u58A 253 1.89e+01 1k77A 260 1.90e+01 c.1.15.5 72096 1idpA 172 1.91e+01 d.17.4.1 83685 1sflA 238 1.97e+01 1j8mF 297 1.97e+01 1ng1 a.24.13.1,c.37.1.10 62742,62743 1fhgA 154 1.97e+01 1tlk b.1.1.4 21706 1vrmA 325 2.03e+01 1wddS 128 2.05e+01 1qqqA 264 2.06e+01 1bkpA d.117.1.1 40931 1w2wA 211 2.08e+01 c.124.1.5 109130 2g8mA 264 2.10e+01 2f7tA 227 2.13e+01 2c0zA 216 2.17e+01 1kzfA 230 2.18e+01 d.108.1.3 73354 1pyaB 228 2.19e+01 1pyaB 2a1hA 365 2.22e+01 2ganA 190 2.26e+01 1r4vA 171 2.29e+01 a.197.1.1 97049 1u2cA 246 2.39e+01 b.1.6.2,d.272.1.1 107610,107611 1r7mA 235 2.41e+01 1snzA 344 2.42e+01 b.30.5.4 98930 2g3aA 152 2.42e+01 1xeuA 263 2.49e+01 1gtmA 419 2.53e+01 1hwyA c.2.1.7,c.58.1.1 30223,33871 1uluA 261 2.63e+01 1f60A 458 2.65e+01 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25705,25745,32140 1uesA 191 2.71e+01 a.2.11.1,d.44.1.1 107798,107799 1xebA 150 2.73e+01 1ve4A 206 2.75e+01 1kt6A 183 2.77e+01 b.60.1.1 84466 2faoA 309 2.79e+01 2beiA 170 2.82e+01 1y0yA 353 2.83e+01 1mqkL 120 2.84e+01 b.1.1.1 85054 2f6kA 307 2.86e+01 1wgzA 510 2.88e+01 1tzjA 338 2.92e+01 1d7oA 297 2.99e+01 1enp c.2.1.2 29907 2ajuL 216 3.04e+01 1dqeA 137 3.06e+01 1dqeA a.39.2.1 17388 1geeA 261 3.10e+01 c.2.1.2 90509 1f3uA 118 3.11e+01 1f3uA b.65.1.1 27521 1id2A 106 3.16e+01 1aac b.6.1.1 62288 1ej0A 180 3.17e+01 1ej0A c.66.1.2 34179 1vjlA 164 3.17e+01 d.257.1.1 100822 1yvoA 172 3.21e+01 1se8A 301 3.26e+01 b.40.4.3 105448 1u94A 356 3.31e+01 c.37.1.11,d.48.1.1 107743,107744 1uacL 107 3.31e+01 b.1.1.1 99133 1stzA 338 3.32e+01 a.4.5.51,d.110.2.3 106009,106010 2aq8A 269 3.43e+01 2mprA 421 3.43e+01 2mprA f.4.3.2 43788 2conA 79 3.44e+01 1rkiA 102 3.58e+01 1rmg 422 3.58e+01 1rmg b.80.1.3 28029 1bwwA 109 3.64e+01 8fabA b.1.1.1 20518 2bjqA 345 3.66e+01 1wmiA 90 3.69e+01 1p5vB 147 3.70e+01 b.2.3.2 87814 1ztuA 341 3.73e+01 1uuqA 440 3.76e+01 c.1.8.3 100015 2c78A 405 3.87e+01 2fxqA 264 3.88e+01 1ew4A 106 3.98e+01 1ew4A d.82.2.1 40023 1i76A 163 4.01e+01 1hfc d.92.1.11 61877 1wdjA 187 4.14e+01 1f28A 297 4.18e+01 1bkpA d.117.1.1 59608 2btiA 63 4.20e+01 1q2yA 140 4.24e+01 d.108.1.1 95655 1xfrA 128 4.31e+01 2ew8A 249 4.32e+01 1kshB 152 4.33e+01 b.1.18.8 72915 1fjgE 162 4.38e+01 1pkp d.14.1.1,d.50.1.2 37553,38789 1yw5A 177 4.41e+01 1tr0A 108 4.44e+01 d.58.4.4 107261 1mjuL 219 4.47e+01 b.1.1.1,b.1.1.2 91304,91305 1dabA 539 4.49e+01 1dabA b.80.1.7 28049 1a3c 181 4.73e+01 1a3c c.61.1.1 34095 1mdc 133 4.77e+01 1hmt b.60.1.2 27198 2c4bA 143 4.90e+01 1o8vA 134 4.98e+01 b.60.1.2 86680 1zanL 214 4.99e+01 1ly2A 130 5.05e+01 g.18.1.1,g.18.1.1 74335,74336 1oxdA 227 5.10e+01 d.22.1.1 93687 2a1vA 144 5.15e+01 2bolA 314 5.17e+01 1iznA 286 5.19e+01 e.43.1.1 83847 1je0A 236 5.21e+01 c.56.2.1 66581 1x3eA 165 5.23e+01 1eny 268 5.23e+01 1eny c.2.1.2 29910 1f39A 101 5.25e+01 1umuA b.87.1.1 28386 1a2pA 110 5.36e+01 1b20A d.1.1.2 36140 1ju2A 536 5.55e+01 c.3.1.2,d.16.1.1 77169,77170 1q6uA 245 5.60e+01 d.26.1.1 95998 1a2yA 107 5.61e+01 8fabA b.1.1.1 19926 2cx6A 90 5.61e+01 1vdmA 153 5.65e+01 1qsgA 265 5.74e+01 1eny c.2.1.2 29935 1bkb 136 5.80e+01 1bkb b.34.5.2,b.40.4.5 24609,25341 1whzA 70 5.81e+01 2dcnA 311 5.85e+01 1c0pA 363 5.89e+01 1an9A c.4.1.2,d.16.1.3 30647,37934 1txkA 498 5.92e+01 b.1.18.2,b.30.5.9 107425,107426 1cl8A 276 5.94e+01 1ckqA c.52.1.1 33230 1d5tA 433 6.00e+01 1gnd c.3.1.3,d.16.1.6 30422,37986 1y8tA 324 6.02e+01 1p9eA 331 6.03e+01 d.157.1.5 104088 1x82A 190 6.09e+01 1ihjA 98 6.13e+01 1pdr b.36.1.1 62382 1ofdA 1520 6.24e+01 b.80.4.1,c.1.4.1,d.153.1.1 86935,86936,86937 1bkzA 135 6.32e+01 1a3k b.29.1.3 24202 1mexL 213 6.41e+01 b.1.1.1,b.1.1.2 91259,91260 1txlA 215 6.43e+01 b.60.1.4 107429 1h09A 338 6.51e+01 b.109.1.1,c.1.8.8 83420,83421 1xvsA 126 6.55e+01 1gouA 116 6.57e+01 d.1.1.2 65429 1vl7A 157 6.59e+01 b.45.1.1 108732 1tfzA 424 6.59e+01 d.32.1.3,d.32.1.3 106886,106887 3nul 130 6.65e+01 3nul d.110.1.1 40891 1vrbA 342 6.65e+01 1uheA 97 6.67e+01 1ustA 93 6.67e+01 a.4.5.13 99884 1o9gA 250 6.69e+01 c.66.1.29 86692 1orc 71 6.70e+01 1orc a.35.1.2 17054 4fiv 113 6.73e+01 1fmb b.50.1.1 26762 1gy6A 127 6.75e+01 d.17.4.2 70736 1iq4A 179 6.77e+01 1iq4A d.77.1.1 62641 1ngzA 213 6.78e+01 b.1.1.1,b.1.1.2 80500,80501 1on0A 158 6.84e+01 d.108.1.1 87095 1z7lA 276 7.06e+01 1mkkA 96 7.10e+01 g.17.1.1 79240 1qysA 106 7.19e+01 k.41.1.1 96603 1y0zA 330 7.23e+01 1mzyA 333 7.24e+01 b.6.1.3,b.6.1.3 103848,103849 1wteA 272 7.25e+01 1lnsA 763 7.25e+01 a.40.2.1,b.18.1.13,c.69.1.21 78101,78102,78103 1thqA 170 7.29e+01 f.4.1.2 106920 1xrtA 467 7.33e+01 1ydwA 362 7.45e+01 1fvkA 189 7.52e+01 1fvkA c.47.1.13 90351 1quqB 121 7.52e+01 1quqB b.40.4.3 25305 1ra6A 461 7.53e+01 e.8.1.4 104879 1ygaA 342 7.53e+01 1kqpA 271 7.61e+01 c.26.2.1 72883 1o75A 415 7.64e+01 b.1.20.1,b.1.20.1,b.120.1.1 81117,81118,81119 1wguA 136 7.82e+01 1ej6D 418 7.86e+01 i.7.1.1 45970 1vqvA 306 7.86e+01 1ur4A 399 7.88e+01 1w66A 232 7.98e+01 1v5rA 97 8.00e+01 1gl2B 65 8.03e+01 h.1.15.1 65279 1w19A 160 8.09e+01 1tmxA 293 8.12e+01 1h30A 422 8.19e+01 b.29.1.4,b.29.1.4 76604,76605 2fm8A 135 8.19e+01 1npsA 88 8.20e+01 1prs b.11.1.1 23622 2f5gA 133 8.29e+01 1r9hA 135 8.43e+01 d.26.1.1 97260 2fmmA 74 8.61e+01 1gd0A 122 8.61e+01 1dptA d.80.1.3 39834 1gttA 429 8.68e+01 d.177.1.1,d.177.1.1 70529,70530 1nh8A 304 8.70e+01 c.94.1.1,d.58.5.3 80507,80508 1f20A 435 8.84e+01 b.43.4.1,c.25.1.4 64932,64933 2fyxA 143 8.88e+01 2d1eA 248 8.88e+01 1pjhA 280 8.90e+01 c.14.1.3 94761 1zthA 258 8.92e+01