# List of top-scoring protein chains for t06-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1o0iA 138 2.21e-15 d.38.1.5 86532 1zkiA 133 5.78e-15 1vh5A 148 3.03e-14 d.38.1.5 100642 2fs2A 151 4.53e-14 1wluA 136 8.75e-14 1j1yA 136 1.19e-13 d.38.1.5 90776 1yliA 153 1.46e-12 1q4uA 151 3.82e-12 d.38.1.5 95828 1z6bA 154 6.49e-12 1vpmA 169 1.01e-11 1ixlA 131 3.41e-11 d.38.1.5 90717 2gvhA 288 3.86e-11 1yocA 147 9.12e-11 1t82A 155 2.66e-10 d.38.1.5 106639 1sh8A 154 8.73e-09 d.38.1.5 105549 2cyeA 133 1.46e-08 2b3nA 159 5.51e-08 1s5uA 138 1.19e-06 d.38.1.1 98573 2cwzA 141 1.59e-05 2gf6A 135 2.09e-05 1c8uA 285 2.97e-05 1c8uA d.38.1.3,d.38.1.3 38547,38548 1z54A 132 8.78e-05 2aliA 158 2.20e-04 1iq6A 134 2.41e-04 d.38.1.4 76755 1pn2A 280 1.35e-03 d.38.1.4,d.38.1.4 94930,94931 2bi0A 337 1.16e-02 1lo7A 141 1.75e-02 d.38.1.1 74144 1mkaA 171 2.52e-02 1mkaA d.38.1.2 38543 1tbuA 118 2.83e-01 2essA 248 3.60e-01 1te5A 257 7.14e-01 d.153.1.1 106795 1h30A 422 1.83e+00 b.29.1.4,b.29.1.4 76604,76605 2awkA 228 3.29e+00 1ikpA 613 4.01e+00 b.29.1.7,d.166.1.1,f.1.5.1 66182,66183,66184 1vhoA 346 4.23e+00 b.49.3.1,c.56.5.4 100694,100695 1txqA 93 5.43e+00 1tib 269 6.16e+00 3tgl c.69.1.17 34738 1yq2A 1024 6.28e+00 1sjdA 368 6.58e+00 c.1.11.2,d.54.1.1 105632,105633 1te0A 318 7.84e+00 1zosA 230 8.68e+00 1sr8A 298 9.54e+00 e.54.1.1 105959 1kt6A 183 9.56e+00 b.60.1.1 84466 1m4lA 307 1.01e+01 c.56.5.1 78604 1hq0A 295 1.02e+01 1hzgA d.194.1.1 61122 1yrcA 414 1.12e+01 1qv1A 195 1.13e+01 a.39.1.5 96347 1j8mF 297 1.16e+01 1ng1 a.24.13.1,c.37.1.10 62742,62743 1wohA 305 1.22e+01 c.42.1.1 109446 1zbqA 327 1.25e+01 1yoeA 322 1.25e+01 1f7lA 121 1.27e+01 1f7lA d.150.1.2 59666 1lzlA 323 1.30e+01 c.69.1.2 78306 1u58A 253 1.31e+01 1vb3A 428 1.32e+01 1s50A 259 1.37e+01 1vmaA 306 1.38e+01 a.24.13.1,c.37.1.10 108887,108888 1vkcA 158 1.43e+01 1z90A 469 1.44e+01 1svdM 110 1.46e+01 1zz1A 369 1.49e+01 1ydwA 362 1.50e+01 1ux6A 350 1.54e+01 b.29.1.16,g.75.1.1 100145,100146 1t3tA 1303 1.60e+01 a.5.10.1,c.23.16.1,d.284.1.2,d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1 106381,106382,106383,106384,106385,106386,106387 1xi1A 575 1.66e+01 1pmi 440 1.71e+01 1pmi b.82.1.3 28114 1mo9A 523 1.77e+01 c.3.1.5,c.3.1.5,d.87.1.1 79341,79342,79343 1josA 128 1.78e+01 d.52.7.1 84191 1xhkA 187 1.94e+01 2f7tA 227 2.00e+01 4pgaA 337 2.01e+01 4pgaA c.88.1.1 35565 1qf5A 431 2.08e+01 1adeA c.37.1.10 32212 1u2cA 246 2.15e+01 b.1.6.2,d.272.1.1 107610,107611 1pea 385 2.19e+01 1pea c.93.1.1 35662 1cvrA 435 2.21e+01 1cvrA b.1.18.12,c.17.1.2 21949,31006 1rf6A 427 2.27e+01 d.68.2.2 97366 1o4sA 389 2.39e+01 c.67.1.1 86620 1cbs 137 2.40e+01 1hmt b.60.1.2 27201 1oxdA 227 2.54e+01 d.22.1.1 93687 1vrmA 325 2.56e+01 1rkd 309 2.59e+01 1rkd c.72.1.1 34928 1um0A 365 2.63e+01 d.258.1.1 107942 1hw7A 255 2.64e+01 1i7fA d.193.1.1 61297 1se8A 301 2.73e+01 b.40.4.3 105448 1xahA 354 2.73e+01 1c44A 123 2.91e+01 1qndA d.106.1.1 40795 2gsq 202 3.06e+01 1pd21 a.45.1.1,c.47.1.5 17715,33009 1ek6A 348 3.21e+01 1xel c.2.1.2 29800 1upaA 573 3.22e+01 c.31.1.3,c.36.1.5,c.36.1.9 99714,99715,99716 2bwnA 401 3.27e+01 1ogsA 497 3.33e+01 b.71.1.2,c.1.8.3 86997,86998 1idpA 172 3.35e+01 d.17.4.1 83685 1ve3A 227 3.51e+01 1su8A 636 3.57e+01 e.26.1.2 98999 1xx6A 191 3.61e+01 1p7tA 731 3.63e+01 c.1.13.1 94319 1i1jA 108 3.75e+01 1i1jA b.34.2.1 61531 1gnxA 479 3.76e+01 c.1.8.4 76241 1r4vA 171 3.80e+01 a.197.1.1 97049 1yt8A 539 3.83e+01 1wurA 220 3.89e+01 1gai 472 3.92e+01 1ayx a.102.1.1 18819 1p4cA 380 4.00e+01 c.1.4.1 94100 1ju2A 536 4.03e+01 c.3.1.2,d.16.1.1 77169,77170 1go3F 107 4.04e+01 a.60.8.2 65407 1gnlA 544 4.04e+01 e.26.1.1 70287 1jetA 517 4.37e+01 1jevA c.94.1.1 35718 1umdB 324 4.40e+01 c.36.1.7,c.48.1.2 99600,99601 1ct9A 553 4.42e+01 1ct9A c.26.2.1,d.153.1.1 31616,41834 1zarA 282 4.82e+01 2acvA 463 4.83e+01 2a0mA 316 4.85e+01 1swxA 209 4.86e+01 a.224.1.1 106075 1tiqA 180 4.93e+01 d.108.1.1 107010 1rvkA 382 5.04e+01 c.1.11.2,d.54.1.1 97928,97929 1gxrA 337 5.11e+01 b.69.4.1 70722 1p3dA 475 5.13e+01 c.5.1.1,c.59.1.1,c.72.2.1 87728,87729,87730 1ve4A 206 5.25e+01 1e8gA 560 5.30e+01 1qltA d.58.32.1,d.145.1.1 39455,41718 1pvtA 238 5.33e+01 c.74.1.1 95189 1uhkA 191 5.34e+01 1s1fA 406 5.35e+01 1e8cA 498 5.40e+01 c.98.1.1,c.59.1.1,c.72.2.1 59377,59378,59379 1o7jA 327 5.41e+01 c.88.1.1 81140 1cseI 71 5.41e+01 1egpA d.40.1.1 38559 1evlA 401 5.42e+01 1qf6A c.51.1.1,d.104.1.1 33202,40751 1eemA 241 5.47e+01 1eemA a.45.1.1,c.47.1.5 17717,33011 1p5vB 147 5.49e+01 b.2.3.2 87814 1i76A 163 5.58e+01 1hfc d.92.1.11 61877 1rypI 222 5.82e+01 d.153.1.4 41877 1afwA 393 5.88e+01 1afwA c.95.1.1,c.95.1.1 35900,35901 1kyqA 274 6.01e+01 c.2.1.11,e.37.1.1 73281,73282 1knwA 425 6.08e+01 b.49.2.3,c.1.6.1 90969,90970 1wbeA 209 6.09e+01 1ynfA 458 6.12e+01 2a46A 238 6.14e+01 1s5pA 235 6.17e+01 c.31.1.5 98569 1lfwA 470 6.17e+01 c.56.5.4,d.58.19.1 77942,77943 1ma3A 253 6.26e+01 c.31.1.5 78883 2abqA 306 6.33e+01 1e9rA 437 6.43e+01 c.37.1.11 64827 1fhgA 154 6.44e+01 1tlk b.1.1.4 21706 1d2oA 187 6.48e+01 1d2oA b.3.5.1,b.3.5.1 22625,22626 1v54B 227 6.64e+01 b.6.1.2,f.17.2.1 100322,100323 1fmcA 255 6.65e+01 1cydA c.2.1.2 29856 1p9bA 442 6.75e+01 c.37.1.10 94385 2gl5A 410 6.92e+01 1d1gA 168 6.92e+01 1d1gA c.71.1.1 34889 1jz8A 1023 6.99e+01 b.1.4.1,b.1.4.1,b.18.1.5,b.30.5.1,c.1.8.3 67830,67831,67832,67833,67834 1wcv1 257 7.02e+01 1uwcA 261 7.05e+01 c.69.1.17 100101 1m6yA 301 7.13e+01 a.60.13.1,c.66.1.23 78716,78717 1uu1A 335 7.25e+01 c.67.1.1 99993 1g6aA 271 7.33e+01 1btl e.3.1.1 42704 1fj2A 232 7.37e+01 1auoA c.69.1.14 34720 1vlbA 907 7.39e+01 a.56.1.1,d.15.4.2,d.41.1.1,d.133.1.1 108739,108740,108741,108742 2aq8A 269 7.49e+01 1zc1A 208 7.52e+01 1fo0B 112 7.63e+01 1kb5B b.1.1.1 20631 1q5dA 419 7.71e+01 a.104.1.1 95891 1to6A 371 7.73e+01 c.141.1.1 107170 1rg9A 383 7.77e+01 d.130.1.1,d.130.1.1,d.130.1.1 97427,97428,97429 1t0yA 122 7.78e+01 d.15.1.1 99066 1sbp 310 7.95e+01 1sbp c.94.1.1 35760 2ajtA 500 7.98e+01 1w5rA 278 8.09e+01 1kqpA 271 8.16e+01 c.26.2.1 72883 1wp5A 323 8.20e+01 2ghpA 292 8.24e+01 1tmxA 293 8.26e+01 1l4uA 176 8.26e+01 c.37.1.2 73568 1vjzA 341 8.27e+01 c.1.8.3 100838 1w78A 422 8.29e+01 1f0nA 285 8.33e+01 1dqyA c.69.1.3 34636 2fv7A 331 8.43e+01 2f4lA 297 8.47e+01 1meoA 209 8.50e+01 c.65.1.1 79035 1eny 268 8.63e+01 1eny c.2.1.2 29910 1r2jA 366 8.69e+01 a.29.3.1,e.6.1.1 96869,96870 1xkrA 206 8.71e+01 2btoA 473 8.77e+01 1w4tA 299 8.81e+01 1v71A 323 8.85e+01 1z21A 112 8.86e+01 2cy2A 174 8.91e+01 1v02A 565 8.92e+01 c.1.8.4 108194 1yqyA 523 8.95e+01