# List of top-scoring protein chains for T0322.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1u1zA 168 7.35e-15 d.38.1.6 107602 1zkiA 133 4.53e-14 2b6eA 146 1.47e-13 1o0iA 138 1.67e-13 d.38.1.5 86532 2cy9A 140 3.19e-13 1wluA 136 9.34e-13 1yliA 153 1.52e-12 1psuA 140 2.08e-12 d.38.1.5 88285 1vpmA 169 2.08e-12 2fs2A 151 2.09e-12 1vh5A 148 2.65e-12 d.38.1.5 100642 1sbkA 144 4.16e-12 d.38.1.5 98791 1y7uA 174 6.86e-12 1vh9A 149 3.28e-11 d.38.1.5 100653 1z6bA 154 1.59e-10 1q4uA 151 7.98e-10 d.38.1.5 95828 1ixlA 131 2.05e-09 d.38.1.5 90717 1t82A 155 2.14e-09 d.38.1.5 106639 2cyeA 133 3.26e-09 1njkA 156 1.40e-08 d.38.1.1 85818 1yocA 147 1.55e-08 1sh8A 154 4.38e-07 d.38.1.5 105549 2b3nA 159 8.44e-07 2av9A 147 2.47e-06 1s5uA 138 5.10e-06 d.38.1.1 98573 1z54A 132 2.97e-05 1iq6A 134 6.33e-05 d.38.1.4 76755 2gf6A 135 7.18e-05 2cwzA 141 1.27e-04 1q6wA 161 1.43e-04 d.38.1.4 96000 2aliA 158 8.01e-04 1lo9A 141 3.16e-03 d.38.1.1 74146 1lo7A 141 6.06e-03 d.38.1.1 74144 1c8uA 285 2.46e-01 1c8uA d.38.1.3,d.38.1.3 38547,38548 1tbuA 118 3.24e-01 1pn2A 280 3.99e-01 d.38.1.4,d.38.1.4 94930,94931 2cdhS 248 4.90e-01 1pn4A 280 5.68e-01 d.38.1.4,d.38.1.4 94940,94941 1s9cA 298 7.73e-01 1te5A 257 9.97e-01 d.153.1.1 106795 2bi0A 337 2.26e+00 1bhgA 613 3.05e+00 1bhgA b.1.4.1,b.18.1.5,c.1.8.3 22161,23766,28889 1oysA 245 3.11e+00 d.14.1.4,d.101.1.1 93758,93759 1mkaA 171 3.95e+00 1mkaA d.38.1.2 38543 1oypA 245 4.32e+00 d.14.1.4,d.101.1.1 93734,93735 1yycA 174 4.90e+00 2cf2C 342 4.93e+00 1ex9A 285 1.04e+01 1cvl c.69.1.18 34785 2essA 248 1.14e+01 1v6iA 232 1.26e+01 b.29.1.1 100383 2pelA 236 1.28e+01 1led b.29.1.1 24082 1xfrA 128 1.35e+01 2fjyA 142 1.36e+01 1dqeA 137 1.37e+01 1dqeA a.39.2.1 17388 1udoA 255 1.54e+01 d.14.1.4,d.101.1.1 99215,99216 3gcb 470 1.90e+01 3gcb d.3.1.1 37032 1a6r 471 1.93e+01 3gcb d.3.1.1 37033 1gcb 454 1.95e+01 3gcb d.3.1.1 37034 1pkyA 470 2.24e+01 1a49A b.58.1.1,c.1.12.1,c.49.1.1 27068,29296,33150 1e0uA 470 2.25e+01 1a49A b.58.1.1,c.1.12.1,c.49.1.1 27072,29300,33154 1e0tA 470 2.25e+01 1a49A b.58.1.1,c.1.12.1,c.49.1.1 27064,29292,33146 1lrtA 376 2.31e+01 c.1.5.1 84685 1udnA 255 2.31e+01 d.14.1.4,d.101.1.1 99213,99214 2ae8A 221 2.52e+01 2fydB 286 2.63e+01 2fycB 286 2.69e+01 1pvnA 376 2.74e+01 c.1.5.1 88312 1pztA 286 2.76e+01 c.68.1.2 95470 1cr5A 189 2.80e+01 1cr5A b.52.2.3,d.31.1.1 26931,38465 1nmmB 286 2.81e+01 c.68.1.2 80662 2ba0G 259 2.85e+01 1udsA 255 2.99e+01 d.14.1.4,d.101.1.1 99219,99220 1nf5B 286 3.10e+01 c.68.1.2 80454 1fgxA 288 3.16e+01 1fgxA c.68.1.2 34508 1me8A 503 3.25e+01 c.1.5.1 79028 1mvqA 236 3.28e+01 b.29.1.1 91473 1yroB 286 3.44e+01 2esrA 177 3.45e+01 2belA 283 3.47e+01 2bf6A 449 3.56e+01 1ej0A 180 3.59e+01 1ej0A c.66.1.2 34179 1ifvA 155 3.73e+01 d.129.3.1 71204 1ikpA 613 3.83e+01 b.29.1.7,d.166.1.1,f.1.5.1 66182,66183,66184 1ikqA 613 3.86e+01 b.29.1.7,d.166.1.1,f.1.5.1 66185,66186,66187 1vkfA 188 3.87e+01 c.1.29.1 108656 2fl8A 602 3.88e+01 1fr8A 288 4.08e+01 1fgxA c.68.1.2 34510 2gh1A 301 4.14e+01 1yhwA 297 4.18e+01 1s50A 259 4.18e+01 1yhvA 297 4.20e+01 1udqA 255 4.46e+01 d.14.1.4,d.101.1.1 99217,99218 1mejA 223 4.67e+01 c.65.1.1 79029 1yhpA 212 4.76e+01 1q3eA 207 4.82e+01 b.82.3.2 95669 1meoA 209 5.05e+01 c.65.1.1 79035 1gu1A 156 5.06e+01 c.23.13.1 70563 2bt4A 157 5.09e+01 1ocxA 182 5.18e+01 b.81.1.3 86814 1zlyA 203 5.21e+01 2d3pA 236 5.30e+01 1tyyA 339 5.31e+01 1fpwA 190 5.37e+01 1rec a.39.1.5 17329 1v10A 521 5.44e+01 b.6.1.3,b.6.1.3,b.6.1.3 108224,108225,108226 1ahr 146 5.80e+01 1cll a.39.1.5 17287 1nzrA 128 5.94e+01 1nwpA b.6.1.1 22959 1vkcA 158 6.01e+01 1fts 295 6.30e+01 1ng1 a.24.13.1,c.37.1.10 16968,32279 1q3tA 236 6.36e+01 c.37.1.1 104525 1apyB 141 6.41e+01 1apyB 1icxA 155 6.86e+01 d.129.3.1 71191 1xu9A 286 6.88e+01 1x4zA 121 6.90e+01 1cknB 330 6.95e+01 1ckmA b.40.4.6,d.142.2.3 25361,41588 1w44A 331 7.04e+01 1vefA 395 7.19e+01 1cpo 299 7.22e+01 1cpo a.39.3.1,a.39.3.1 17390,17391 1r9hA 135 7.27e+01 d.26.1.1 97260 1ckmA 330 7.32e+01 1ckmA b.40.4.6,d.142.2.3 25358,41585 1xhsA 121 7.39e+01 2fy7A 287 7.43e+01 1wk2A 121 8.06e+01 1dglA 237 8.18e+01 1nls b.29.1.1 24133 1gtzA 156 8.57e+01 c.23.13.1 70539 1qwgA 251 8.57e+01 c.1.27.1 96473 1xb8A 128 8.64e+01 1ilsA 128 8.66e+01 1nwpA b.6.1.1 22955 1hc1 657 8.94e+01 1lla a.85.1.1,a.86.1.1,b.1.18.3 18494,18505,21870