# List of top-scoring protein chains for t04-100-30-stride-ebghtl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1zkiA 133 1.14e-18 1o0iA 138 5.34e-18 d.38.1.5 86532 2b6eA 146 1.49e-17 1vh5A 148 2.00e-17 d.38.1.5 100642 1u1zA 168 4.54e-17 d.38.1.6 107602 2fs2A 151 9.80e-17 1wluA 136 1.02e-16 1j1yA 136 1.05e-16 d.38.1.5 90776 1psuA 140 4.08e-16 d.38.1.5 88285 1vpmA 169 5.90e-16 1yliA 153 8.89e-16 1q4uA 151 3.84e-14 d.38.1.5 95828 1z6bA 154 8.23e-14 1ixlA 131 8.41e-14 d.38.1.5 90717 2gvhA 288 2.96e-13 1t82A 155 3.61e-13 d.38.1.5 106639 1yocA 147 4.13e-13 2cyeA 133 2.00e-12 1njkA 156 5.22e-12 d.38.1.1 85818 1sh8A 154 1.84e-11 d.38.1.5 105549 2av9A 147 1.82e-10 1z54A 132 4.84e-10 1s5uA 138 1.00e-09 d.38.1.1 98573 2b3nA 159 8.39e-09 2gf6A 135 8.28e-08 2aliA 158 8.40e-08 1bvqA 141 2.57e-07 1bvqA d.38.1.1 38542 1lo7A 141 3.03e-07 d.38.1.1 74144 2cwzA 141 3.20e-07 1iq6A 134 5.36e-07 d.38.1.4 76755 2essA 248 7.90e-06 1tbuA 118 1.89e-05 1mkaA 171 2.04e-05 1mkaA d.38.1.2 38543 2bi0A 337 9.49e-05 1c8uA 285 1.08e-04 1c8uA d.38.1.3,d.38.1.3 38547,38548 1yycA 174 2.41e-02 1pn2A 280 7.93e-02 d.38.1.4,d.38.1.4 94930,94931 2b59A 187 5.47e-01 2bm3A 166 6.94e-01 1lshA 1056 2.12e+00 a.118.4.1,f.7.1.1,f.7.1.1 74242,74243,74244 1yirA 408 2.76e+00 1q52A 314 4.54e+00 c.14.1.3 95846 1txqA 93 5.29e+00 1r45A 204 5.39e+00 1h3nA 878 5.45e+00 a.27.1.1,b.51.1.1,c.26.1.1 76641,76642,76643 2bc4A 211 5.78e+00 2a9kB 223 5.84e+00 1g24A 211 6.52e+00 1g24A d.166.1.1 42270 1qyaA 307 6.82e+00 d.21.1.2,d.21.1.2 104653,104654 1xkpC 143 7.40e+00 1te5A 257 7.57e+00 d.153.1.1 106795 1xdnA 277 8.68e+00 2bf6A 449 8.87e+00 1s1fA 406 9.02e+00 1cb0A 283 9.86e+00 1cb0A c.56.2.1 33790 1iq4A 179 1.01e+01 1iq4A d.77.1.1 62641 1w9hA 427 1.03e+01 1tcvA 287 1.06e+01 2gr8A 99 1.09e+01 2a15A 139 1.26e+01 1oh0A 131 1.28e+01 d.17.4.3 87004 1b8oA 284 1.32e+01 1b8oA c.56.2.1 33762 3pmgA 561 1.39e+01 3pmgA c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 35408,35409,35410,41301 1o9gA 250 1.42e+01 c.66.1.29 86692 1ikpA 613 1.57e+01 b.29.1.7,d.166.1.1,f.1.5.1 66182,66183,66184 2d09A 407 1.58e+01 2f4lA 297 1.63e+01 1ema 236 1.65e+01 1ema d.22.1.1 38339 1zo2A 129 1.69e+01 1w66A 232 1.71e+01 2d0eA 407 1.79e+01 1kt6A 183 1.85e+01 b.60.1.1 84466 1sdjA 310 1.86e+01 d.21.1.2,d.21.1.2 98807,98808 1yr0A 175 1.90e+01 1zb9A 143 1.95e+01 1uh5A 329 1.97e+01 c.2.1.2 107840 1w3jA 468 2.02e+01 c.1.8.4 109156 1cr5A 189 2.09e+01 1cr5A b.52.2.3,d.31.1.1 26931,38465 2cbuA 468 2.13e+01 1opy 131 2.14e+01 1opy d.17.4.3 38113 1s7jA 262 2.24e+01 d.21.1.2 98647 1l0wA 580 2.29e+01 b.40.4.1,d.74.4.1,d.104.1.1 73426,73427,73428 1aqb 183 2.32e+01 1aqb b.60.1.1 27084 1dmmA 131 2.40e+01 1opy d.17.4.3 38114 1bzyA 217 2.45e+01 1qk3A c.61.1.1 34071 1gnxA 479 2.49e+01 c.1.8.4 76241 1jenA 267 2.50e+01 1jenA 1cjbA 231 2.53e+01 1qk3A c.61.1.1 34079 1erjA 393 2.54e+01 1erjA b.69.4.1 27660 1hbq 183 2.56e+01 1aqb b.60.1.1 27078 1gy6A 127 2.57e+01 d.17.4.2 70736 1vrbA 342 2.58e+01 1k4nA 192 2.65e+01 d.32.1.5 72059 1nkgA 508 2.68e+01 b.3.1.2,b.18.1.25,b.30.5.10 103859,103860,103861 1tu1A 148 2.90e+01 d.107.1.3 107316 1xi1A 575 2.93e+01 1xo3A 101 2.97e+01 1hdmA 201 3.02e+01 1iakA b.1.1.2,d.19.1.1 21583,38157 1ww7A 160 3.03e+01 1wteA 272 3.04e+01 2fibA 269 3.07e+01 3fib d.171.1.1 42457 1vpkA 378 3.12e+01 1i5pA 633 3.16e+01 1i5pA b.18.1.3,b.77.2.1,f.1.3.1 61817,61818,61819 1ve4A 206 3.20e+01 2sli 679 3.20e+01 2sli b.29.1.9,b.68.1.1 24274,27611 1su8A 636 3.20e+01 e.26.1.2 98999 1uxzA 131 3.23e+01 b.18.1.10 100170 1jjyA 636 3.24e+01 1jjyA 1cbs 137 3.27e+01 1hmt b.60.1.2 27201 2afcA 168 3.33e+01 1q79A 514 3.52e+01 a.160.1.1,d.218.1.3,d.58.16.1 104548,104549,104550 1hnuA 280 3.58e+01 1hnoA c.14.1.3 61096 1ounA 127 3.68e+01 1ounA d.17.4.2 38090 3fib 249 3.73e+01 3fib d.171.1.1 42455 2fg1A 158 3.77e+01 1ttwA 138 3.80e+01 d.198.1.1 107308 1wcdJ 441 3.83e+01 1ydwA 362 3.94e+01 1o6vA 466 3.97e+01 b.1.18.15,c.10.2.1 81099,81100 1u58A 253 4.10e+01 1h6tA 291 4.24e+01 b.1.18.15,c.10.2.1 65686,65687 1k77A 260 4.40e+01 c.1.15.5 72096 1d2oA 187 4.40e+01 1d2oA b.3.5.1,b.3.5.1 22625,22626 1pjhA 280 4.43e+01 c.14.1.3 94761 1th5A 74 4.49e+01 1mdc 133 4.51e+01 1hmt b.60.1.2 27198 1fobA 334 4.52e+01 c.1.8.3 83255 1xeuA 263 4.65e+01 1esxA 96 4.70e+01 1esxA j.11.1.1 59501 1zaiA 363 4.79e+01 1unnC 115 4.80e+01 d.240.1.1 99680 1owfB 94 4.91e+01 a.55.1.1 87488 1xewY 172 4.91e+01 1vrmA 325 4.97e+01 1u69A 163 5.01e+01 d.32.1.7 107699 1b06A 210 5.01e+01 1avmA a.2.11.1,d.44.1.1 15740,38737 1wkqA 164 5.03e+01 c.97.1.2 109393 1uspA 139 5.08e+01 d.227.1.1 99879 1p0zA 131 5.11e+01 d.110.6.1 93882 2frnA 278 5.15e+01 1tyjA 170 5.25e+01 1o0wA 252 5.26e+01 a.149.1.1,d.50.1.1 80751,80752 1cwvA 492 5.30e+01 1cwvA b.1.14.1,b.1.14.1,b.1.14.1,b.1.14.1,d.169.1.3 22373,22374,22375,22376,42442 1uv7A 110 5.43e+01 d.67.4.1 100040 1nb9A 147 5.46e+01 b.43.5.1 85515 1vprA 374 5.48e+01 1f39A 101 5.52e+01 1umuA b.87.1.1 28386 1w2iA 91 5.55e+01 d.58.10.1 109127 1pguA 615 5.64e+01 b.69.4.1,b.69.4.1 88069,88070 1uwdA 103 5.69e+01 1ztuA 341 5.75e+01 1iznA 286 5.81e+01 e.43.1.1 83847 2f6kA 307 5.92e+01 1gmiA 136 5.93e+01 b.7.1.1 65309 1dceA 567 5.95e+01 1dceA a.118.6.1,b.7.4.1,c.10.2.2 19191,23218,30867 1xbtA 193 6.01e+01 1ytw 306 6.03e+01 1ytw c.45.1.2 32689 1jx2B 315 6.28e+01 c.37.1.8 67404 1yq2A 1024 6.29e+01 1uvqA 197 6.34e+01 b.1.1.2,d.19.1.1 100062,100063 1zldA 120 6.39e+01 1g87A 614 6.41e+01 a.102.1.2,b.2.2.2 83275,83276 1hjsA 332 6.71e+01 c.1.8.3 83492 1y791 680 6.71e+01 2g6yA 217 6.79e+01 2f7tA 227 7.03e+01 1oyc 400 7.09e+01 1oyc c.1.4.1 28603 1bqcA 302 7.11e+01 1bqcA c.1.8.3 28831 1oruA 195 7.16e+01 b.58.1.2 93464 2amdA 311 7.26e+01 1tiyA 164 7.31e+01 c.97.1.2 107012 2a8nA 144 7.43e+01 1f3uA 118 7.45e+01 1f3uA b.65.1.1 27521 1cqqA 180 7.55e+01 1cqqA b.47.1.4 26422 1adoA 363 7.58e+01 1fbaA c.1.10.1 29124 1wtaA 275 7.59e+01 1w4rA 195 7.65e+01 4pfk 319 7.70e+01 3pfk c.89.1.1 35582 1u6mA 199 7.71e+01 1dqeA 137 7.72e+01 1dqeA a.39.2.1 17388 1r1dA 247 7.73e+01 c.69.1.29 96813 1kzfA 230 7.81e+01 d.108.1.3 73354 1an9A 340 7.83e+01 1an9A c.4.1.2,d.16.1.3 30617,37904 2agaA 190 7.89e+01 1cl8A 276 7.89e+01 1ckqA c.52.1.1 33230 1zhxA 438 7.89e+01 1meoA 209 7.94e+01 c.65.1.1 79035 2beiA 170 7.95e+01 2b69A 343 8.05e+01 2bwqA 129 8.13e+01 1eudB 396 8.21e+01 2scuB c.23.4.1,d.142.1.4 31150,41571 1nvpD 108 8.34e+01 a.32.1.1,b.56.1.1 92213,92214 1ieaA 192 8.67e+01 1iakA b.1.1.2,d.19.1.1 21631,38205 1sx5A 244 8.69e+01 c.52.1.2 99023 2covD 104 8.71e+01 1tiqA 180 8.72e+01 d.108.1.1 107010 1uz1A 468 8.72e+01 1g2oA 268 8.72e+01 1b8oA c.56.2.1 60228 1q2wA 308 8.83e+01 b.47.1.4 88355 1vcaA 202 8.87e+01 1vcaA b.1.1.3,b.1.1.4 21649,21685 1o97D 320 8.93e+01 c.26.2.3,c.31.1.2 81233,81234 1nh2D 121 8.95e+01 a.32.1.1,b.56.1.1 91876,91877