# List of top-scoring protein chains for T0321.t2k-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1neiA 60 4.92e-01 d.253.1.1 91843 1v30A 124 3.67e+00 2esvE 240 4.71e+00 1mdaL 121 4.76e+00 2bbkL g.21.1.1 44885 2cd9A 366 6.92e+00 2cdcA 366 6.95e+00 1jjoC 261 7.99e+00 2fug6 181 8.23e+00 1r0kA 388 1.15e+01 a.69.3.1,c.2.1.3,d.81.1.3 104723,104724,104725 2c2xA 281 1.19e+01 4cms 323 1.20e+01 1smrA b.50.1.2 26866 1hjxA 362 1.53e+01 c.1.8.5,d.26.3.1 83512,83513 3cms 323 1.57e+01 1smrA b.50.1.2 26865 2fnbA 95 1.72e+01 2fnbA b.1.2.1 21979 1uriA 129 1.88e+01 1nwpA b.6.1.1 22905 1azcA 129 1.91e+01 1nwpA b.6.1.1 22899 1budA 197 1.92e+01 1atlA d.92.1.9 40328 1r7mA 235 1.94e+01 1mzaA 240 1.94e+01 b.47.1.2 79692 1bswA 197 1.94e+01 1atlA d.92.1.9 40329 1r0pA 312 2.01e+01 d.144.1.7 96734 2bhoA 130 2.16e+01 2g15A 318 2.18e+01 1pryA 227 2.23e+01 c.66.1.3 95063 2fjbA 643 2.25e+01 1jnrA 643 2.29e+01 a.7.3.1,c.3.1.4,d.168.1.1 66966,66967,66968 1qjtA 99 2.30e+01 1eh2 a.39.1.6 17335 1vcfA 332 2.31e+01 1cf2O 337 2.45e+01 1b7gO c.2.1.3,d.81.1.1 29994,39909 1j7hA 130 2.72e+01 d.79.1.1 77097 1guqA 348 3.01e+01 1guqA d.13.1.2,d.13.1.2 37522,37523 1tie 172 3.06e+01 1wba b.42.4.1 25592 1qlaA 656 3.10e+01 1qlaA a.7.3.1,c.3.1.4,d.168.1.1 16328,30427,42310 1hxpA 348 3.14e+01 1guqA d.13.1.2,d.13.1.2 37530,37531 1hxqA 348 3.15e+01 1guqA d.13.1.2,d.13.1.2 37542,37543 1hxqB 348 3.16e+01 1guqA d.13.1.2,d.13.1.2 37544,37545 1tp5A 119 3.23e+01 2axwA 134 3.29e+01 1e7pG 655 3.35e+01 1qlaA a.7.3.1,c.3.1.4,d.168.1.1 59359,59360,59361 2bs3A 656 3.35e+01 1be9A 119 3.77e+01 1pdr b.36.1.1 24774 1q5vA 133 3.85e+01 a.43.1.3,d.58.18.4 95937,95938 2cioA 212 4.30e+01 1khqA 212 4.32e+01 d.3.1.1 90964 1t7sA 137 4.36e+01 a.7.7.1 106636 9pap 212 4.37e+01 1cs8A d.3.1.1 37006 1th1C 179 4.39e+01 2bsjA 133 4.40e+01 1q9iA 571 4.63e+01 a.138.1.3,c.3.1.4,d.168.1.1 96273,96274,96275 2bshA 125 4.75e+01 1frfL 564 5.01e+01 1h2rL e.18.1.1 43300 1kkeA 210 5.10e+01 b.21.1.2,b.83.1.2 68669,68670 1n0rA 126 5.17e+01 k.37.1.1 79756 1stzA 338 5.22e+01 a.4.5.51,d.110.2.3 106009,106010 2f2eA 146 5.24e+01 1yrqH 549 5.29e+01 1n0qA 93 5.60e+01 k.37.1.1 79754 2fd4A 122 5.62e+01 1i1qB 192 5.65e+01 1qdlB c.23.16.1 61544 2rmcA 182 5.70e+01 2cpl b.62.1.1 27491 1pdr 99 5.78e+01 1pdr b.36.1.1 24771 1yqwQ 549 5.82e+01 1q5yA 85 5.96e+01 d.58.18.4 95950 1dgnA 89 6.05e+01 1dgnA a.77.1.3 18436 1za5A 192 6.07e+01 1iscA 192 6.22e+01 1avmA a.2.11.1,d.44.1.1 15733,38726 1ztuA 341 6.23e+01 1lybB 241 6.33e+01 1smrA 2c53A 244 6.35e+01 1qduB 88 6.37e+01 1pauB 1f9eB 89 6.43e+01 1pauB 1qtnB 95 6.60e+01 1pauB 1am4A 199 6.74e+01 1tx4A a.116.1.1 19100 1grnB 203 6.83e+01 1tx4A a.116.1.1 19106 1djlA 207 7.10e+01 1d4oA c.31.1.4 31746 2govA 195 7.18e+01 2gk4A 232 7.19e+01 1k6dA 220 7.53e+01 c.124.1.2 72082 1zglP 249 7.56e+01 1pzwA 80 7.81e+01 g.39.1.10 95483 1vbuA 328 8.09e+01 1dnpA 471 8.25e+01 1qnf a.99.1.1,c.28.1.1 18775,31630 1s12A 94 8.31e+01 1hleA 345 8.33e+01 1ovaA e.1.1.1 42618 2fckA 181 8.50e+01 1tx2A 297 8.52e+01 c.1.21.1 107420 1dwvA 420 8.65e+01 1nseA d.174.1.1 42501 1n2nA 419 8.65e+01 d.174.1.1 79855 2bhjA 422 8.68e+01 1df1A 423 8.72e+01 1nseA d.174.1.1 42499 1pqwA 198 8.81e+01 c.2.1.1 88278 1bxnI 139 8.85e+01 1rboC d.73.1.1 39666 1qqkA 140 8.86e+01 1bfg b.42.1.1 25535 1jwjA 433 8.98e+01 d.174.1.1 67385 1r35A 433 8.99e+01