# List of top-scoring protein chains for t2k-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1neiA 60 1.18e-01 d.253.1.1 91843 1guqA 348 1.57e+00 1guqA d.13.1.2,d.13.1.2 37522,37523 1gupA 348 1.62e+00 1guqA d.13.1.2,d.13.1.2 37534,37535 1hxpA 348 1.85e+00 1guqA d.13.1.2,d.13.1.2 37530,37531 1vbuA 328 2.62e+00 2aehA 369 4.19e+00 9pap 212 4.58e+00 1cs8A d.3.1.1 37006 1ppn 212 4.60e+00 1cs8A d.3.1.1 37004 1khqA 212 4.72e+00 d.3.1.1 90964 2cioA 212 4.77e+00 2al6A 375 5.41e+00 1wj7A 104 6.27e+00 1xat 212 7.74e+00 2xat b.81.1.3 28059 2bzpA 226 8.50e+00 1hjxA 362 9.04e+00 c.1.8.5,d.26.3.1 83512,83513 1hl9A 449 9.37e+00 b.71.1.3,c.1.8.11 90650,90651 1ehaA 558 9.86e+00 1ehaA b.1.18.2,b.71.1.1,c.1.8.1 21859,27786,28773 2fd4A 122 1.01e+01 2xat 212 1.04e+01 2xat b.81.1.3 28058 1udh 244 1.06e+01 3eugA c.18.1.1 31015 1jtdB 273 1.17e+01 b.69.5.2 67265 1yn8A 59 1.21e+01 2awaA 390 1.32e+01 1g99A 408 1.35e+01 1g99A c.55.1.2,c.55.1.2 33457,33458 1udg 244 1.38e+01 3eugA c.18.1.1 31016 1eu1A 780 1.45e+01 1dmr b.52.2.2,c.81.1.1 26903,35311 1ituA 369 1.48e+01 c.1.9.7 71423 1u2eA 289 1.49e+01 1rwrA 301 1.52e+01 b.80.1.11 97990 2avtA 378 1.55e+01 1w97L 246 1.57e+01 1wyuB 474 1.65e+01 2b4gA 317 1.66e+01 1aty 79 1.75e+01 1aty j.35.1.1 46259 1jfmA 174 1.99e+01 d.19.1.1 66640 1nj4A 363 2.02e+01 b.105.1.1,e.3.1.1 80545,80546 1n0qA 93 2.06e+01 k.37.1.1 79754 1bfeA 119 2.07e+01 1pdr b.36.1.1 24775 1be9A 119 2.22e+01 1pdr b.36.1.1 24774 2axwA 134 2.25e+01 1ztuA 341 2.27e+01 1a12A 413 2.32e+01 1a12A b.69.5.1 27663 1u59A 287 2.39e+01 d.144.1.7 107681 2c27A 315 2.44e+01 1eh9A 558 2.45e+01 1ehaA b.1.18.2,b.71.1.1,c.1.8.1 21858,27785,28772 1pujA 282 2.57e+01 c.37.1.8 88294 1s7zA 117 2.67e+01 a.159.3.1 98715 1nh9A 87 2.74e+01 d.68.6.1 91878 1s0aA 429 2.76e+01 c.67.1.4 98263 1yhvA 297 2.84e+01 1xpjA 126 2.90e+01 1pdr 99 2.91e+01 1pdr b.36.1.1 24771 1hl8A 449 2.96e+01 b.71.1.3,c.1.8.11 90646,90647 1qj5A 429 2.99e+01 1dtyA c.67.1.4 34493 1flcB 175 3.14e+01 1flcB h.3.1.1 45716 1sg4A 260 3.18e+01 1p0hA 318 3.28e+01 d.108.1.1 93866 1e3hA 757 3.30e+01 1e3hA a.4.9.1,d.14.1.4,d.14.1.4,d.52.3.1,d.101.1.1,d.101.1.1 16257,37572,37573,38810,40695,40696 1zkkA 167 3.32e+01 1rlzA 369 3.36e+01 c.31.1.1 104989 1w6kA 732 3.41e+01 1g26A 31 3.42e+01 1g26A g.3.16.1 44381 1x3mA 415 3.42e+01 1e3pA 757 3.42e+01 1e3hA a.4.9.1,b.40.4.5,d.14.1.4,d.14.1.4,d.52.3.1,d.101.1.1,d.101.1.1 16258,25328,37574,37575,38811,40697,40698 1th1C 179 3.43e+01 1ivnA 190 3.55e+01 c.23.10.5 83719 1sro 76 3.62e+01 1sro b.40.4.5 25327 1agrE 205 3.62e+01 1agrE a.91.1.1 18538 1v9nA 360 3.64e+01 1v30A 124 3.66e+01 1gbs 185 3.70e+01 153l d.2.1.5 36986 1khoA 370 3.77e+01 a.124.1.1,b.12.1.3 72489,72490 1aii 323 3.79e+01 1avc a.65.1.1 18150 1axn 323 3.79e+01 1avc a.65.1.1 18149 1pgl2 370 3.82e+01 1buuA 168 3.82e+01 1rtm1 d.169.1.1,h.1.1.1 42366,45388 1uwdA 103 4.00e+01 1bmv2 374 4.01e+01 1bmv2 1ex2A 189 4.02e+01 1ex2A c.51.4.2 33225 1flzA 228 4.04e+01 3eugA c.18.1.1 31027 1xhbA 472 4.05e+01 2azpA 318 4.10e+01 1dtyA 429 4.14e+01 1dtyA c.67.1.4 34495 1dnpA 471 4.15e+01 1qnf a.99.1.1,c.28.1.1 18775,31630 1s12A 94 4.26e+01 1uteA 313 4.39e+01 1uteA d.159.1.1 42078 2a19B 284 4.42e+01 1akz 223 4.44e+01 3eugA c.18.1.1 31007 1s7iA 124 4.45e+01 d.58.4.9 105353 1sspE 223 4.48e+01 3eugA c.18.1.1 31009 2fqmA 75 4.55e+01 1agp 166 4.62e+01 1ctqA c.37.1.8 31985 1u2xA 474 4.67e+01 c.72.1.3 107622 1gw5A 621 4.67e+01 a.118.1.10 70629 1dvh 79 4.69e+01 1c53 a.3.1.1 15802 1z96A 40 4.76e+01 1u5pA 216 4.92e+01 1r6vA 671 4.96e+01 1h6kZ 98 5.11e+01 d.58.7.1 60686 2dvh 79 5.19e+01 1c53 a.3.1.1 15803 1qadA 111 5.21e+01 1qadA d.93.1.1 40498 1xhhA 91 5.29e+01 1rtm1 149 5.33e+01 1rtm1 1u04A 771 5.39e+01 b.34.14.1,c.55.3.10 107539,107540 1bw0A 416 5.47e+01 1bw0A c.67.1.1 34385 1oo4A 111 5.48e+01 d.93.1.1 87185 5p21 166 5.48e+01 1ctqA c.37.1.8 31966 1xmxA 385 5.51e+01 1i2tA 61 5.77e+01 1i2tA a.144.1.1 61582 1h9oA 112 5.80e+01 1qadA d.93.1.1 60837 1hxiA 121 5.85e+01 1hxiA a.118.8.1 61366 1m5yA 408 5.95e+01 a.167.1.1,d.26.1.1,d.26.1.1 78664,78665,78666 1hd8A 363 6.01e+01 b.105.1.1,e.3.1.1 65803,65804 1zk8A 183 6.02e+01 4eugA 229 6.03e+01 3eugA c.18.1.1 31019 1eugA 229 6.03e+01 3eugA c.18.1.1 31021 3eugA 229 6.09e+01 3eugA c.18.1.1 31018 1i4jA 110 6.23e+01 d.55.1.1 76734 1v3vA 333 6.27e+01 b.35.1.2,c.2.1.1 108345,108346 1euiA 228 6.33e+01 3eugA c.18.1.1 31028 1snnA 227 6.44e+01 d.115.1.2 105821 1tie 172 6.45e+01 1wba b.42.4.1 25592 1yixA 265 6.54e+01 1r6fA 310 6.59e+01 e.46.1.1 97149 1auiA 521 6.61e+01 1auiA d.159.1.3 42085 1mugA 168 6.67e+01 1mugA c.18.1.2 31030 1h6kX 97 6.69e+01 d.58.7.1 60684 1lnsA 763 6.74e+01 a.40.2.1,b.18.1.13,c.69.1.21 78101,78102,78103 1z2uA 150 6.76e+01 1awcA 110 6.81e+01 1awcA a.4.5.21 16167 1hkvA 453 6.81e+01 b.49.2.3,c.1.6.1 83559,83560 1r9kA 172 6.85e+01 a.168.1.1 104869 1pvyA 227 6.87e+01 d.115.1.2 95195 1azsB 212 6.93e+01 1azsA d.58.29.1 39423 2ajrA 331 6.96e+01 1k1vA 41 6.96e+01 a.37.1.1 71999 1c4xA 285 6.96e+01 1c4xA c.69.1.10 34684 1owqA 361 7.03e+01 c.1.8.5,d.26.3.1 104041,104042 1bxeA 113 7.16e+01 1bxeA d.55.1.1 38898 1v4pA 157 7.18e+01 2bv2A 83 7.20e+01 1h2vZ 156 7.23e+01 d.58.7.1 76595 1ctqA 166 7.30e+01 1ctqA c.37.1.8 31965 1xbbA 291 7.34e+01 1tp5A 119 7.36e+01 1dhs 344 7.39e+01 1dhs c.31.1.1 31727 1vg5A 73 7.42e+01 1ayg 80 7.44e+01 451c a.3.1.1 15831 1li5B 461 7.62e+01 a.27.1.1,c.26.1.1 73914,73915 1hdhA 536 7.89e+01 c.76.1.2 65805 2fu4A 83 7.89e+01 2c2nA 339 8.00e+01 1xjdA 345 8.07e+01 1xnpA 202 8.11e+01 3il8 72 8.17e+01 1tvxA d.9.1.1 37356 2itg 163 8.20e+01 1b9dA c.55.3.2 33669 1ty9A 222 8.25e+01 1t6cA 315 8.29e+01 c.55.1.8,c.55.1.8 106558,106559 1ybxA 143 8.29e+01 3nodB 423 8.39e+01 1nseA d.174.1.1 42513 1kicA 339 8.52e+01 c.70.1.1 72510 1fsz 372 8.53e+01 1fsz c.32.1.1,d.79.2.1 31750,39802 1mnmC 87 8.55e+01 1akhB a.4.1.1 15983 1irk 306 8.66e+01 1fmk d.144.1.7 41703 1cyw 205 8.81e+01 1cyx b.6.1.2 23024 1wp1A 474 8.84e+01 5ldh 334 8.84e+01 3ldh c.2.1.5,d.162.1.1 30158,42125 1li5A 461 8.97e+01 a.27.1.1,c.26.1.1 73912,73913 1cyx 205 8.99e+01 1cyx b.6.1.2 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