# List of top-scoring protein chains for t04-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1wy6A 172 1.90e-01 1y08A 323 2.53e-01 1to6A 371 3.93e-01 c.141.1.1 107170 1tx2A 297 4.10e-01 c.1.21.1 107420 1qopA 268 4.86e-01 2tysA c.1.2.4 28570 1a12A 413 8.05e-01 1a12A b.69.5.1 27663 1nm8A 616 9.00e-01 c.43.1.3,c.43.1.3 85872,85873 1ad4A 266 1.10e+00 1aj2 c.1.21.1 29670 1u8vA 490 1.13e+00 1tufA 434 1.14e+00 b.49.2.3,c.1.6.1 107335,107336 1twiA 434 1.46e+00 b.49.2.3,c.1.6.1 107399,107400 1ad1A 266 1.86e+00 1aj2 c.1.21.1 29668 1xiuA 230 2.05e+00 2tysA 268 2.28e+00 2tysA c.1.2.4 28572 2fjbA 643 2.79e+00 1zcoA 262 2.82e+00 1oi2A 366 2.96e+00 c.119.1.2 103802 1jnrA 643 3.18e+00 a.7.3.1,c.3.1.4,d.168.1.1 66966,66967,66968 1zsyA 357 3.30e+00 1x8gA 227 3.56e+00 1zyeA 220 3.95e+00 1mgtA 174 3.95e+00 1mgtA a.4.2.1,c.55.7.1 16078,33753 1ii5A 233 4.10e+00 c.94.1.1 62412 1xi3A 215 4.25e+00 c.1.3.1 109601 1gr0A 367 4.41e+00 c.2.1.3,d.81.1.3 70379,70380 1x8hA 228 4.52e+00 1t1uA 639 5.42e+00 1cyj 90 5.85e+00 1ctj a.3.1.1 15805 1ws0A 156 6.07e+00 1qvbA 481 6.28e+00 1qvbA c.1.8.4 28983 1n57A 291 7.25e+00 c.23.16.2 85328 1wqaA 455 7.37e+00 1eyeA 280 7.40e+00 1aj2 c.1.21.1 29672 1kfcA 268 7.43e+00 c.1.2.4 77371 1n5nA 180 7.45e+00 d.167.1.1 85336 1zxzA 197 7.86e+00 1uch 230 8.25e+00 1uch d.3.1.6 37129 1p0hA 318 8.76e+00 d.108.1.1 93866 1pp7U 131 8.97e+00 a.4.5.44 94973 1w98B 283 9.31e+00 1x8mA 288 9.41e+00 b.82.1.13 109516 2fz4A 237 9.50e+00 1php 394 9.68e+00 16pk c.86.1.1 35452 1q1hA 110 1.04e+01 a.4.5.41 95580 1vbuA 328 1.06e+01 1wvqA 167 1.07e+01 2avnA 260 1.10e+01 1zy1B 197 1.13e+01 1nrwA 288 1.25e+01 c.108.1.10 86128 1t3tA 1303 1.26e+01 a.5.10.1,c.23.16.1,d.284.1.2,d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1 106381,106382,106383,106384,106385,106386,106387 1p5dX 463 1.28e+01 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 94138,94139,94140,94141 1wzaA 488 1.33e+01 1wstA 417 1.35e+01 1vj7A 393 1.40e+01 a.211.1.1,d.218.1.8 100801,100802 2c27A 315 1.49e+01 1k2yX 463 1.50e+01 c.84.1.1,c.84.1.1,c.84.1.1,d.129.2.1 68063,68064,68065,68066 1rwtA 232 1.56e+01 f.43.1.1 97992 1sjdA 368 1.60e+01 c.1.11.2,d.54.1.1 105632,105633 2etvA 346 1.62e+01 1bs4A 168 1.68e+01 1bs4A d.167.1.1 42287 1ve3A 227 1.78e+01 1jtdB 273 1.91e+01 b.69.5.2 67265 1xeoA 168 1.92e+01 1xruA 282 1.96e+01 1axn 323 1.96e+01 1avc a.65.1.1 18149 1g60A 260 1.97e+01 c.66.1.11 70151 1k20A 310 2.00e+01 c.107.1.1 68027 1z5bA 469 2.01e+01 1r0kA 388 2.01e+01 a.69.3.1,c.2.1.3,d.81.1.3 104723,104724,104725 1vr6A 350 2.08e+01 2bzpA 226 2.10e+01 1g2aA 168 2.20e+01 d.167.1.1 65109 1b43A 340 2.25e+01 1a76 a.60.7.1,c.120.1.2 18092,33362 1cf2O 337 2.30e+01 1b7gO c.2.1.3,d.81.1.1 29994,39909 1wywA 230 2.50e+01 1wthD 391 2.56e+01 1tp9A 162 2.61e+01 1pkp 150 2.72e+01 1pkp d.14.1.1,d.50.1.2 37551,38787 1go3F 107 2.81e+01 a.60.8.2 65407 1snyA 267 2.87e+01 c.2.1.2 105833 1nh9A 87 2.90e+01 d.68.6.1 91878 1yobA 179 2.92e+01 1jd0A 263 2.92e+01 2cba b.74.1.1 62888 1h1aA 191 2.98e+01 b.29.1.11 83450 1x9pA 523 3.06e+01 1c4oA 664 3.07e+01 1d2mA c.37.1.19,c.37.1.19 32415,32416 1mu5A 471 3.07e+01 a.156.1.3,d.14.1.3,d.122.1.2 79472,79473,79474 2g8lA 299 3.08e+01 1xnkA 196 3.09e+01 1ei1A 391 3.12e+01 1aj6 d.14.1.3,d.122.1.2 37570,41104 1bn7A 294 3.18e+01 1bn6A c.69.1.8 34677 1p1jA 533 3.18e+01 c.2.1.3,d.81.1.3 87687,87688 1i4jA 110 3.19e+01 d.55.1.1 76734 2bhwA 232 3.37e+01 2f5xA 312 3.41e+01 1mv8A 436 3.43e+01 a.100.1.4,c.2.1.6,c.26.3.1 85128,85129,85130 1d2mA 665 3.53e+01 1d2mA c.37.1.19,c.37.1.19 32417,32418 2viuA 328 3.58e+01 1hgeA b.19.1.2 23797 1rlr 761 3.60e+01 1rlr a.98.1.1,c.7.1.2 18753,30679 1rvgA 305 3.73e+01 c.1.10.2 97920 1ju8A 37 3.76e+01 g.3.6.4 84231 1dgnA 89 3.80e+01 1dgnA a.77.1.3 18436 1t6eX 381 3.81e+01 b.50.1.2 106564 1pa1A 310 3.86e+01 c.45.1.2 94404 1g7fA 298 3.97e+01 1pty c.45.1.2 60330 1ptvA 321 4.24e+01 1pty c.45.1.2 32665 1jj2I 145 4.27e+01 1ffkG c.21.1.1 63094 1tqhA 247 4.28e+01 c.69.1.29 107225 2f71A 298 4.30e+01 1b65A 375 4.30e+01 1b65A d.154.1.1 42020 1syyA 346 4.58e+01 a.25.1.2 106126 1lzlA 323 4.61e+01 c.69.1.2 78306 1m6dA 214 4.75e+01 d.3.1.1 84849 1xl7A 612 4.76e+01 1mvcA 240 4.81e+01 a.123.1.1 79499 1dosA 358 5.03e+01 1dosA c.1.10.2 29175 1r1dA 247 5.09e+01 c.69.1.29 96813 1ybhA 590 5.10e+01 1q0bA 367 5.11e+01 c.37.1.9 95502 1ktbA 405 5.12e+01 b.71.1.1,c.1.8.1 72960,72961 1k68A 140 5.33e+01 c.23.1.1 90943 1uok 558 5.37e+01 1uok b.71.1.1,c.1.8.1 27801,28788 2axwA 134 5.43e+01 1dusA 194 5.51e+01 1dusA c.66.1.4 34182 1r4vA 171 5.53e+01 a.197.1.1 97049 1xvxA 312 5.71e+01 1qlpA 394 5.79e+01 1ovaA e.1.1.1 42628 1be9A 119 5.79e+01 1pdr b.36.1.1 24774 1xa0A 328 5.97e+01 1zkiA 133 6.00e+01 1oe9A 795 6.04e+01 b.34.3.1,c.37.1.9 92792,92793 1s9pA 227 6.07e+01 a.123.1.1 105384 1uwzA 136 6.07e+01 c.97.1.1 108081 1sdsA 117 6.18e+01 d.79.3.1 105439 1g8aA 227 6.23e+01 c.66.1.3 90506 1vp4A 425 6.29e+01 1v0lA 313 6.40e+01 c.1.8.3 108207 1m48A 133 6.45e+01 a.26.1.2 74443 1uasA 362 6.56e+01 b.71.1.1,c.1.8.1 88388,88389 1v30A 124 6.68e+01 1jtkA 136 6.71e+01 c.97.1.1 71862 1j5uA 136 6.72e+01 d.208.1.1 71584 1j7gA 144 6.83e+01 c.110.1.1 84130 1aj2 282 6.83e+01 1aj2 c.1.21.1 29665 2b4aA 138 7.15e+01 2cxxA 190 7.16e+01 1gdvA 85 7.19e+01 1ctj a.3.1.1 60458 1xfpA 142 7.21e+01 b.1.1.1 109587 1eaf 243 7.28e+01 1eaf c.43.1.1 32617 1xreA 217 7.29e+01 1paqA 189 7.33e+01 a.118.1.14 94413 2fywA 267 7.33e+01 2rmcA 182 7.40e+01 2cpl b.62.1.1 27491 1cuk 203 7.41e+01 1hjp a.5.1.1,a.60.2.1,b.40.4.2 16273,17946,25265 1whi 122 7.45e+01 1whi b.39.1.1 24810 1tp5A 119 7.45e+01 1mrzA 293 7.46e+01 b.43.5.1,c.26.1.3 91452,91453 1h1yA 228 7.75e+01 c.1.2.2 76506 1x88A 359 7.90e+01 1xuqA 212 7.96e+01 2ddfA 257 8.04e+01 1xo7A 166 8.06e+01 1jksA 294 8.08e+01 d.144.1.7 71710 2hhmA 276 8.16e+01 1imbA e.7.1.1 42955 1souA 194 8.27e+01 c.124.1.6 105858 2bhvA 246 8.30e+01 2a67A 167 8.36e+01 1vjnA 220 8.40e+01 d.157.1.4 100825 2cw5A 255 8.45e+01 1s12A 94 8.47e+01 1s7zA 117 8.47e+01 a.159.3.1 98715 2bolA 314 8.52e+01 1zq1A 438 8.53e+01 2b6nA 278 8.54e+01 2abqA 306 8.54e+01 1kpgA 287 8.55e+01 c.66.1.18 68735 2cu3A 64 8.76e+01 2cw6A 298 8.90e+01