# List of top-scoring protein chains for t2k-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1sur 215 5.63e-29 1sur c.26.2.2 31620 1gpmA 525 8.72e-06 1gpmA c.23.16.1,c.26.2.1,d.52.2.1 31405,31608,38826 1xngA 268 7.71e-05 1wy5A 317 2.37e-04 1q15A 503 2.74e-03 c.26.2.1,d.153.1.1 95538,95539 1ni5A 433 2.87e-03 c.26.2.5,d.229.1.1 80533,80534 1jgtA 513 1.23e-01 c.26.2.1,d.153.1.1 66684,66685 1mioA 534 1.40e-01 1qguA c.92.2.3 35601 1m1zA 513 1.71e-01 c.26.2.1,d.153.1.1 78457,78458 1vl2A 421 3.10e-01 c.26.2.1,d.210.1.1 108708,108709 2d13A 227 3.16e-01 1kicA 339 9.83e-01 c.70.1.1 72510 1ru8A 232 1.08e+00 c.26.2.1 97849 1fjmA 330 1.77e+00 1auiA d.159.1.3 42082 1u32A 293 1.87e+00 d.159.1.3 107631 1hp0A 339 2.05e+00 c.70.1.1 65900 1jk7A 323 2.26e+00 1auiA d.159.1.3 63144 1nsyA 271 3.38e+00 2nsyA c.26.2.1 31614 1cl4A 60 3.90e+00 1cl4A g.40.1.1 45171 1uarA 285 4.19e+00 c.46.1.2,c.46.1.2 107762,107763 1r9jA 673 4.29e+00 1ih8A 271 4.44e+00 2nsyA c.26.2.1 62377 1kqpA 271 4.46e+00 c.26.2.1 72883 2nsyA 271 4.51e+00 2nsyA c.26.2.1 31612 1hozA 339 4.57e+00 c.70.1.1 65898 2masA 314 4.79e+00 2masA c.70.1.1 34810 1v7lA 163 4.94e+00 2pia 321 5.82e+00 2pia b.43.4.2,c.25.1.2,d.15.4.2 25663,31553,37704 2ac3A 316 5.89e+00 1xqwA 293 7.09e+00 1mtzA 293 8.06e+00 c.69.1.7 79467 1uw0A 117 8.34e+00 g.39.1.12 108063 1bjwA 382 8.50e+00 1bjwA c.67.1.1 34349 1okgA 373 9.08e+00 c.46.1.2,c.46.1.2,d.26.1.3 93250,93251,93252 1pbtA 244 9.27e+00 c.124.1.1 94416 1wxiA 275 9.75e+00 2adr 60 9.93e+00 2adr g.37.1.1,g.37.1.1 45030,45031 1im5A 180 1.12e+01 c.33.1.3 66211 1yoeA 322 1.16e+01 2a74A 643 1.20e+01 2b5wA 357 1.29e+01 1cqxA 403 1.34e+01 1cqxA a.1.1.2,b.43.4.2,c.25.1.5 15635,25667,31562 1sxgA 280 1.34e+01 1qmyA 167 1.39e+01 1qmyA d.3.1.2 37094 2gvhA 288 1.39e+01 1tib 269 1.41e+01 3tgl c.69.1.17 34738 1q8fA 313 1.43e+01 c.70.1.1 96203 1epnE 330 1.44e+01 2er7E b.50.1.2 26780 1go4E 100 1.46e+01 h.1.22.1 70296 1gt6A 269 1.49e+01 c.69.1.17 76342 1korA 400 1.52e+01 c.26.2.1,d.210.1.1 72824,72825 1xm7A 195 1.54e+01 1zh2A 121 1.65e+01 1crzA 403 1.72e+01 1crzA b.68.4.1,c.51.2.1 27629,33211 1gvuA 329 1.79e+01 b.50.1.2 70619 2erxA 172 1.80e+01 1kmnD 424 1.80e+01 1adjA c.51.1.1,d.104.1.1 33185,40734 1nar 290 1.83e+01 1nar c.1.8.5 28988 5er2E 330 1.86e+01 2er7E b.50.1.2 26783 1vl1A 232 1.93e+01 c.124.1.1 108707 2b4zA 104 2.00e+01 1dsvA 31 2.01e+01 1dsvA g.40.1.1 45174 1d66A 66 2.12e+01 1d66A g.38.1.1,h.1.3.1 45076,45510 1kq6A 141 2.19e+01 d.189.1.1 91020 1r5sA 132 2.26e+01 1oewA 329 2.30e+01 b.50.1.2 86924 1udvA 89 2.37e+01 d.68.6.1 99224 2er7E 330 2.44e+01 2er7E b.50.1.2 26779 1tdj 514 2.44e+01 1tdj c.79.1.1,d.58.18.2,d.58.18.2 35297,39356,39357 2g6tA 306 2.65e+01 1u7zA 226 2.65e+01 1llmC 88 2.66e+01 g.37.1.1,g.37.1.1 91059,91060 1xr4A 509 2.71e+01 1lplA 95 2.76e+01 b.34.10.1 74173 1rm4A 337 2.82e+01 c.2.1.3,d.81.1.1 105000,105001 2bkyX 89 2.84e+01 1vg8A 207 2.84e+01 c.37.1.8 108606 1kn9A 249 2.89e+01 b.87.1.2 68699 1tovA 98 2.93e+01 b.34.10.1 107179 1nf8A 207 2.95e+01 c.33.1.3 85630 1tlqA 189 2.96e+01 a.195.1.1 107134 1p77A 272 2.98e+01 c.2.1.7,c.58.1.5 94214,94215 1rqbA 539 3.04e+01 a.5.7.2,c.1.10.5 105057,105058 1vl7A 157 3.17e+01 b.45.1.1 108732 1j5kA 89 3.18e+01 d.51.1.1 71565 1o7kA 131 3.25e+01 d.189.1.1 81144 1hn0A 1021 3.30e+01 a.102.3.2,b.18.1.17,b.24.1.1,b.30.5.2 83616,83617,83618,83619 1cpy 421 3.34e+01 1ivyA c.69.1.5 34651 5cytR 104 3.34e+01 1ycc a.3.1.1 15878 1wqaA 455 3.38e+01 1cseI 71 3.38e+01 1egpA d.40.1.1 38559 1a3h 300 3.40e+01 7a3hA c.1.8.3 28819 1j5eN 60 3.49e+01 g.39.1.7 71557 1fjgN 61 3.67e+01 1fjfN g.39.1.7 45154 1c5kA 439 3.76e+01 1crzA b.68.4.1,c.51.2.1 27630,33212 1v5wA 343 3.80e+01 c.37.1.11 108387 1nstA 325 3.84e+01 1nstA c.37.1.5 31951 1sfcC 83 3.90e+01 1sfcC h.1.15.1 45645 1ywfA 296 4.01e+01 1pl8A 356 4.01e+01 b.35.1.2,c.2.1.1 94878,94879 1suwA 249 4.05e+01 e.52.1.1 106027 2cx6A 90 4.10e+01 1kigL 51 4.12e+01 1hcgB g.3.11.1 44239 1w78A 422 4.26e+01 1womA 271 4.33e+01 1ct9A 553 4.39e+01 1ct9A c.26.2.1,d.153.1.1 31616,41834 1z0sA 278 4.42e+01 1ysc 421 4.53e+01 1ivyA c.69.1.5 34652 1ata 62 4.67e+01 1eaiC g.22.1.1 44893 7a3hA 303 4.67e+01 7a3hA c.1.8.3 28817 1rzrA 332 4.68e+01 2b4gA 317 4.69e+01 1nf9A 207 4.78e+01 c.33.1.3 85631 1bjoA 360 4.96e+01 1bjnA c.67.1.4 34471 1lgpA 116 4.99e+01 b.26.1.2 73890 1xqiA 195 5.01e+01 1tbxA 99 5.18e+01 a.4.5.48 106748 1k92A 455 5.19e+01 c.26.2.1,d.210.1.1 68325,68326 1mp9A 198 5.29e+01 d.129.1.1,d.129.1.1 91385,91386 1bjnA 360 5.30e+01 1bjnA c.67.1.4 34469 1x1iA 752 5.45e+01 1p57B 255 5.48e+01 b.47.1.2 94126 2ex0A 399 5.55e+01 1vgvA 384 5.61e+01 c.87.1.3 100608 1kmmA 424 5.67e+01 1adjA c.51.1.1,d.104.1.1 33174,40723 3crd 100 5.70e+01 3crd a.77.1.3 18429 1ard 29 5.79e+01 g.37.1.1 45033 1adjA 421 5.82e+01 1adjA c.51.1.1,d.104.1.1 33188,40737 2csbA 519 6.06e+01 1n7sC 79 6.06e+01 h.1.15.1 80273 1zmeC 70 6.14e+01 1zmeC g.38.1.1,h.1.3.1 45081,45514 2bf9A 36 6.15e+01 1unnC 115 6.19e+01 d.240.1.1 99680 1h05A 146 6.38e+01 c.23.13.1 76433 1g0uG 252 6.41e+01 d.153.1.4 41952 2ar9A 278 6.57e+01 2faoA 309 6.59e+01 2ac5A 316 6.64e+01 2atvA 196 6.78e+01 1d2zB 153 6.97e+01 1d2zB a.77.1.2 18439 1q01A 38 6.98e+01 1i4mA 108 7.06e+01 d.6.1.1 66025 1ijcA 63 7.12e+01 g.7.1.1 66154 1h4vB 421 7.18e+01 1adjA c.51.1.1,d.104.1.1 60624,60625 1x3lA 440 7.26e+01 1iyxA 432 7.27e+01 c.1.11.1,d.54.1.1 83815,83816 1gqyA 475 7.28e+01 c.5.1.1,c.59.1.1,c.72.2.1 83305,83306,83307 1ajyA 71 7.34e+01 1zmeC g.38.1.1,h.1.3.1 45083,45516 1al8 359 7.44e+01 1gox c.1.4.1 28608 1ecsA 126 7.45e+01 1ecsA d.32.1.2 59407 1uptC 170 7.57e+01 c.37.1.8 99769 1juk 248 7.77e+01 1a53 c.1.2.4 28567 1a5z 319 7.85e+01 1ceqA c.2.1.5,d.162.1.1 30181,42148 1b5pA 385 7.88e+01 c.67.1.1 90403 2b10B 108 7.90e+01 1agqD 135 7.91e+01 1agqA g.17.1.2 44792 1zid 268 7.94e+01 1eny c.2.1.2 29911 1p3dA 475 7.96e+01 c.5.1.1,c.59.1.1,c.72.2.1 87728,87729,87730 1w8iA 156 7.98e+01 1rypA 243 7.99e+01 1pmaA d.153.1.4 41932 1o4sA 389 8.13e+01 c.67.1.1 86620 1f94A 63 8.16e+01 1f94A g.7.1.1 44435 1wndA 495 8.19e+01 1uv7A 110 8.21e+01 d.67.4.1 100040 1tffA 234 8.22e+01 d.3.1.11 106854 1ka2A 499 8.23e+01 d.92.1.5 77305 1b2oA 54 8.52e+01 1rb9 g.41.5.1 45233 1f6dA 376 8.53e+01 1f6dA c.87.1.3 35467 1s6cA 183 8.54e+01 a.39.1.5 98594 1fs0E 138 8.55e+01 1aqt a.2.10.1,b.93.1.1 59997,59998 1h5vA 304 8.56e+01 c.1.8.3 70898 1sw5A 275 8.61e+01 c.94.1.1 106069 1elqA 390 8.72e+01 1elqA c.67.1.3 34436 1umqA 81 8.76e+01 a.4.1.12 99625 2f1rA 171 8.77e+01 1vavA 222 8.82e+01 b.29.1.18 108472 1wvfA 520 8.87e+01 1j0mA 752 8.90e+01 a.102.3.2,b.24.1.1,b.30.5.2 83910,83911,83912