# List of top-scoring protein chains for t2k-100-30-stride-ebghtl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1gv4A 528 4.72e+00 c.3.1.5,c.3.1.5,d.87.1.1 70589,70590,70591 2bkaA 242 1.03e+01 1p5hA 428 1.11e+01 c.123.1.1 87802 1v9tA 166 1.58e+01 b.62.1.1 108451 1cqzA 554 1.66e+01 1cr6B c.69.1.11,c.108.1.2 34689,43339 1m6iA 493 1.72e+01 c.3.1.5,c.3.1.5,d.87.1.1 74533,74534,74535 1j2aA 166 1.74e+01 b.62.1.1 90779 1sznA 417 1.99e+01 b.71.1.1,c.1.8.1 106162,106163 1io7A 368 2.22e+01 1f4tA a.104.1.1 18971 2fdsA 352 2.26e+01 1kn6A 90 2.76e+01 d.58.3.3 72770 1xmkA 79 2.78e+01 1q7eA 428 2.87e+01 c.123.1.1 96035 1pt7A 437 2.87e+01 c.123.1.1 95093 2c4nA 250 3.18e+01 1sur 215 3.38e+01 1sur c.26.2.2 31620 1f4tA 368 3.44e+01 1f4tA a.104.1.1 18973 1v1rA 400 3.55e+01 c.36.1.11 108272 2bfdA 400 3.69e+01 2aqwA 332 3.80e+01 1twyA 290 3.91e+01 1x7yA 400 4.17e+01 1vjyA 303 4.25e+01 d.144.1.7 108633 1clh 166 4.36e+01 2cpl b.62.1.1 27512 1olsA 400 4.55e+01 c.36.1.11 93331 1ek1A 554 4.68e+01 1cr6B c.69.1.11,c.108.1.2 34685,43335 1ihcA 188 4.82e+01 1di6A c.57.1.1 62379 1jljA 189 4.88e+01 c.57.1.1 63169 1oiaA 95 4.91e+01 d.58.7.1 87051 1m1fA 110 4.96e+01 b.34.6.2 78401 1apq 53 5.31e+01 1apq g.3.11.1 44324 2fy6A 143 5.43e+01 1k8kA 418 5.45e+01 c.55.1.1,c.55.1.1 68305,68306 1csjA 531 5.46e+01 1quvA e.8.1.4 43120 1eaf 243 5.70e+01 1eaf c.43.1.1 32617 1umwA 237 5.78e+01 d.223.1.2,d.223.1.2 99631,99632 1n1cA 217 5.83e+01 a.184.1.1 85254 1dpb 243 5.92e+01 1eaf c.43.1.1 32618 2gk4A 232 6.16e+01 1h10A 125 6.18e+01 b.55.1.1 83446 1unqA 125 6.18e+01 b.55.1.1 107968 1j2mA 99 6.36e+01 a.165.1.1 84018 2por 301 6.52e+01 2por f.4.3.1 43759 1kal 29 6.56e+01 g.3.3.1 44077 1k4nA 192 6.69e+01 d.32.1.5 72059 1sqjA 789 6.73e+01 b.69.13.1,b.69.13.1 105918,105919 1jjzA 29 7.12e+01 g.3.3.1 71699 2gnxA 365 7.13e+01 1theA 260 7.20e+01 1theB d.3.1.1 37056 1hjsA 332 7.23e+01 c.1.8.3 83492 1tca 317 7.28e+01 1tca c.69.1.17 34726 1kmfA 21 7.45e+01 1dmwA 307 7.48e+01 4pah d.178.1.1 42580 1n1fA 159 7.56e+01 a.26.1.3 79803 1theB 260 7.83e+01 1theB d.3.1.1 37057 1mo9A 523 7.93e+01 c.3.1.5,c.3.1.5,d.87.1.1 79341,79342,79343 2a0iA 330 7.97e+01 1iogA 21 8.00e+01 1xw7A 21 8.08e+01 1b59A 370 8.18e+01 1bn5 a.4.5.25,d.127.1.1 16225,41162 1msoA 21 8.36e+01 1quvA 578 8.36e+01 1quvA e.8.1.4 43119 1i3cA 149 8.41e+01 c.23.1.1 71112 1qnjA 240 8.49e+01 5ptp b.47.1.2 26238 1pah 308 8.67e+01 4pah d.178.1.1 42578 1lo6A 223 8.69e+01 b.47.1.2 74143 1rot 149 8.75e+01 1fkj d.26.1.1 38429