# List of top-scoring protein chains for t2k-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1twyA 290 6.73e+00 1ve1A 304 7.38e+00 2bjhA 260 8.86e+00 1k8kA 418 9.69e+00 c.55.1.1,c.55.1.1 68305,68306 1uwcA 261 9.93e+00 c.69.1.17 100101 1imuA 107 1.19e+01 d.204.1.1 66218 1m55A 197 1.34e+01 d.89.1.3 74469 1uswA 260 1.35e+01 c.69.1.17 99895 1ortA 335 1.37e+01 1othA c.78.1.1,c.78.1.1 35204,35205 1n3gA 113 1.69e+01 d.204.1.1 79962 1odfA 290 1.73e+01 c.37.1.6 92782 1gv4A 528 1.75e+01 c.3.1.5,c.3.1.5,d.87.1.1 70589,70590,70591 1voqa 90 1.89e+01 1mkmA 249 1.96e+01 a.4.5.33,d.110.2.2 79242,79243 1i6pA 220 1.96e+01 1ddzA c.53.2.1 61848 1zowA 313 2.02e+01 2por 301 2.16e+01 2por f.4.3.1 43759 1m6iA 493 2.20e+01 c.3.1.5,c.3.1.5,d.87.1.1 74533,74534,74535 2bkaA 242 2.33e+01 1l7vC 249 2.42e+01 c.37.1.12 73674 1l4sA 112 2.59e+01 d.204.1.1 77693 1eu8A 409 2.81e+01 1eu8A c.94.1.1 59502 1kcfA 258 2.88e+01 a.140.2.1,c.55.3.7 68434,68435 1b59A 370 3.15e+01 1bn5 a.4.5.25,d.127.1.1 16225,41162 2fy6A 143 3.17e+01 1k4nA 192 3.25e+01 d.32.1.5 72059 1f60A 458 3.40e+01 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25705,25745,32140 1d02A 202 3.49e+01 1d02A c.52.1.8 33313 1n2aA 201 3.60e+01 a.45.1.1,c.47.1.5 91553,91554 2a0iA 330 3.85e+01 2gi3A 476 3.91e+01 1rvkA 382 4.08e+01 c.1.11.2,d.54.1.1 97928,97929 1vhqA 232 4.11e+01 c.23.16.2 100696 1xmkA 79 4.11e+01 1a0fA 201 4.12e+01 1a0fA a.45.1.1,c.47.1.5 17737,33031 1fg9C 245 4.28e+01 1jrhI b.1.2.1,b.1.2.1 22060,22061 1oy1A 228 4.30e+01 c.23.16.2 87548 1m4uA 206 4.41e+01 g.17.1.7 78625 1w9gA 104 4.41e+01 1ouvA 273 4.43e+01 a.118.18.1 93570 1jy5A 212 4.56e+01 d.124.1.1 71940 2g6yA 217 4.95e+01 1jcaA 21 5.07e+01 1r9lA 309 5.12e+01 c.94.1.1 97262 1dr9A 201 5.14e+01 1dr9A b.1.1.1,b.1.1.3 19762,21684 1b94A 244 5.19e+01 1rvaA c.52.1.2 33250 1h3gA 601 5.25e+01 b.1.18.2,b.71.1.1,c.1.8.1 90594,90595,90596 1rvaA 244 5.35e+01 1rvaA c.52.1.2 33240 1g7aA 21 5.43e+01 1m1fA 110 5.43e+01 b.34.6.2 78401 1benA 21 5.45e+01 1t71A 281 5.54e+01 1miqA 375 5.58e+01 b.50.1.2 79151 1rweA 21 5.73e+01 1sx5A 244 5.77e+01 c.52.1.2 99023 1ah9 71 5.84e+01 1ah9 b.40.4.5 25330 1vgvA 384 5.97e+01 c.87.1.3 100608 1xw7A 21 6.00e+01 1rm6B 324 6.19e+01 1iogA 21 6.21e+01 1qs8A 329 6.31e+01 1smrA b.50.1.2 26887 1unqA 125 6.31e+01 b.55.1.1 107968 1sqjA 789 6.37e+01 b.69.13.1,b.69.13.1 105918,105919 2f2bA 246 6.39e+01 1lu4A 136 6.40e+01 c.47.1.10 91124 1reoA 486 6.51e+01 c.3.1.2,d.16.1.5 97325,97326 1k3mA 21 6.59e+01 1bssA 244 6.63e+01 1rvaA c.52.1.2 33256 1p4dA 330 6.68e+01 d.89.1.5 94101 1q4vA 21 6.68e+01 1lkqA 21 6.69e+01 1msoA 21 6.83e+01 2ccyA 128 6.96e+01 2ccyA a.24.3.2 16544 1p5hA 428 7.28e+01 c.123.1.1 87802 1eonA 245 7.30e+01 1rvaA c.52.1.2 33238 1kmfA 21 7.53e+01 1pfzA 380 7.60e+01 1smrA b.50.1.2 26881 1h10A 125 7.67e+01 b.55.1.1 83446 1d2tA 231 7.78e+01 1d2tA a.111.1.1 19052 1i3uA 127 7.86e+01 1gc1H b.1.1.1 61636 2biiA 424 8.31e+01 1bn5 478 8.37e+01 1bn5 a.4.5.25,d.127.1.1 16224,41161 1ga1A 372 8.66e+01 1ga1A c.41.1.2 32557 1eaf 243 8.79e+01 1eaf c.43.1.1 32617 1iohA 21 8.91e+01 1b6a 478 8.91e+01 1bn5 a.4.5.25,d.127.1.1 16223,41160 2yhx 457 8.98e+01 2yhx i.12.1.1 46024