# List of top-scoring protein chains for t2k-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1gv4A 528 2.93e+00 c.3.1.5,c.3.1.5,d.87.1.1 70589,70590,70591 1m6iA 493 6.69e+00 c.3.1.5,c.3.1.5,d.87.1.1 74533,74534,74535 1k8kA 418 8.52e+00 c.55.1.1,c.55.1.1 68305,68306 2fy6A 143 1.10e+01 2aqwA 332 1.22e+01 2fdsA 352 1.32e+01 1xmkA 79 1.40e+01 1kugA 203 1.63e+01 d.92.1.9 73008 2bkaA 242 1.65e+01 1clh 166 1.65e+01 2cpl b.62.1.1 27512 1p5hA 428 1.89e+01 c.123.1.1 87802 2c4nA 250 2.05e+01 1kn6A 90 2.14e+01 d.58.3.3 72770 1j2aA 166 2.16e+01 b.62.1.1 90779 2gk4A 232 2.30e+01 1v9tA 166 2.38e+01 b.62.1.1 108451 1eaf 243 2.58e+01 1eaf c.43.1.1 32617 1dpb 243 2.67e+01 1eaf c.43.1.1 32618 1k4nA 192 2.73e+01 d.32.1.5 72059 2fbaA 492 2.82e+01 1ayx 492 2.87e+01 1ayx a.102.1.1 18825 1kufA 203 3.09e+01 d.92.1.9 73007 1apq 53 3.12e+01 1apq g.3.11.1 44324 2por 301 3.23e+01 2por f.4.3.1 43759 1pah 308 3.30e+01 4pah d.178.1.1 42578 4pah 308 3.49e+01 4pah d.178.1.1 42576 1dmwA 307 3.52e+01 4pah d.178.1.1 42580 1pt7A 437 3.53e+01 c.123.1.1 95093 1tca 317 3.54e+01 1tca c.69.1.17 34726 1u2fA 90 3.72e+01 1u2fA d.58.7.1 39168 1q7eA 428 3.77e+01 c.123.1.1 96035 1oq1A 223 3.93e+01 b.29.1.17 93408 1j8uA 325 4.32e+01 d.178.1.1 71611 1lo6A 223 4.54e+01 b.47.1.2 74143 1oiaA 95 4.64e+01 d.58.7.1 87051 1s7hA 200 4.98e+01 d.58.48.2 105349 2ga9D 469 5.59e+01 1m1fA 110 5.62e+01 b.34.6.2 78401 1j2mA 99 5.63e+01 a.165.1.1 84018 1audA 101 5.66e+01 1urnA d.58.7.1 39156 1u3oA 82 5.90e+01 1m4uA 206 6.05e+01 g.17.1.7 78625 1gowA 489 6.10e+01 1qvbA c.1.8.4 28981 1a2s 89 6.19e+01 1ctj a.3.1.1 15800 1uwsA 489 6.44e+01 c.1.8.4 108073 1io7A 368 6.59e+01 1f4tA a.104.1.1 18971 1mi3A 322 6.70e+01 c.1.7.1 91274 1jjzA 29 6.71e+01 g.3.3.1 71699 1l7vC 249 6.85e+01 c.37.1.12 73674 1quvA 578 6.98e+01 1quvA e.8.1.4 43119 1k8cA 322 7.02e+01 c.1.7.1 72172 2dp5A 332 7.07e+01 1h10A 125 7.07e+01 b.55.1.1 83446 1unqA 125 7.07e+01 b.55.1.1 107968 1f4tA 368 7.15e+01 1f4tA a.104.1.1 18973 1u3nA 162 7.26e+01 1twyA 290 7.33e+01 1urnA 97 7.33e+01 1urnA d.58.7.1 39153 2bwrA 401 7.39e+01 1gx5A 536 7.94e+01 e.8.1.4 70682 1spjA 238 8.05e+01 2f2bA 246 8.05e+01 1vjyA 303 8.07e+01 d.144.1.7 108633 1nwbA 124 8.19e+01 b.124.1.1 86296 1csjA 531 8.29e+01 1quvA e.8.1.4 43120 1ugpB 226 8.30e+01 b.34.4.4 107832 1ireB 228 8.32e+01 b.34.4.4 76770 1u6bA 98 8.62e+01 d.58.7.1 107703 1kal 29 8.64e+01 g.3.3.1 44077 1rybA 212 8.65e+01 c.56.3.1 98098 1q79A 514 8.98e+01 a.160.1.1,d.218.1.3,d.58.16.1 104548,104549,104550