# List of top-scoring protein chains for t2k-100-30-dssp-ebghstl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1gv4A 528 1.29e+00 c.3.1.5,c.3.1.5,d.87.1.1 70589,70590,70591 1k8kA 418 5.58e+00 c.55.1.1,c.55.1.1 68305,68306 1j2aA 166 5.59e+00 b.62.1.1 90779 1p5hA 428 5.75e+00 c.123.1.1 87802 1v9tA 166 6.91e+00 b.62.1.1 108451 1pt7A 437 9.51e+00 c.123.1.1 95093 1q7eA 428 1.01e+01 c.123.1.1 96035 1clh 166 1.06e+01 2cpl b.62.1.1 27512 1m6iA 493 1.24e+01 c.3.1.5,c.3.1.5,d.87.1.1 74533,74534,74535 1xmkA 79 1.46e+01 2gk4A 232 1.47e+01 1sqjA 789 1.54e+01 b.69.13.1,b.69.13.1 105918,105919 1v1rA 400 1.77e+01 c.36.1.11 108272 1n1fA 159 1.78e+01 a.26.1.3 79803 1wdkC 390 1.78e+01 c.95.1.1,c.95.1.1 109258,109259 1oq1A 223 1.85e+01 b.29.1.17 93408 2fy6A 143 2.00e+01 1gowA 489 2.07e+01 1qvbA c.1.8.4 28981 2aqwA 332 2.18e+01 2bfdA 400 2.53e+01 1twyA 290 2.72e+01 1pah 308 2.96e+01 4pah d.178.1.1 42578 1s7hA 200 3.05e+01 d.58.48.2 105349 2fdsA 352 3.17e+01 1d2rB 326 3.23e+01 1d2rB c.26.1.1 31573 1io7A 368 3.23e+01 1f4tA a.104.1.1 18971 1uwsA 489 3.23e+01 c.1.8.4 108073 1i6lA 328 3.24e+01 c.26.1.1 66041 1i6kA 328 3.31e+01 c.26.1.1 66040 1dmwA 307 3.35e+01 4pah d.178.1.1 42580 1x7yA 400 3.39e+01 4pah 308 3.39e+01 4pah d.178.1.1 42576 1d2rA 326 3.41e+01 1d2rB c.26.1.1 31572 1u3oA 82 3.42e+01 1m4uA 206 3.43e+01 g.17.1.7 78625 1jjiA 311 3.49e+01 c.69.1.2 66766 1tca 317 3.64e+01 1tca c.69.1.17 34726 1sznA 417 3.67e+01 b.71.1.1,c.1.8.1 106162,106163 1rl4A 188 3.75e+01 d.167.1.1 97636 1eq9A 222 3.77e+01 5ptp b.47.1.2 26068 1m1fA 110 3.92e+01 b.34.6.2 78401 1kugA 203 3.96e+01 d.92.1.9 73008 2bkaA 242 4.00e+01 1d02A 202 4.08e+01 1d02A c.52.1.8 33313 1h10A 125 4.08e+01 b.55.1.1 83446 1unqA 125 4.08e+01 b.55.1.1 107968 1vjyA 303 4.19e+01 d.144.1.7 108633 1eaf 243 4.20e+01 1eaf c.43.1.1 32617 1theB 260 4.29e+01 1theB d.3.1.1 37057 1dpb 243 4.32e+01 1eaf c.43.1.1 32618 1j2mA 99 4.44e+01 a.165.1.1 84018 1lo6A 223 4.45e+01 b.47.1.2 74143 1vhsA 175 4.50e+01 d.108.1.1 100698 1olsA 400 4.50e+01 c.36.1.11 93331 1gx5A 536 4.66e+01 e.8.1.4 70682 2f2bA 246 4.89e+01 1f3rB 257 4.96e+01 1f3rB b.1.1.1,b.1.1.1 20416,20417 1v74A 107 5.14e+01 d.243.1.1 100442 2bwrA 401 5.14e+01 1s99A 200 5.17e+01 2cblA 305 5.22e+01 2cblA a.39.1.7,a.48.1.1,d.93.1.1 17380,17774,40528 2ezvA 269 5.23e+01 1z5vA 474 5.43e+01 1i3uA 127 5.53e+01 1gc1H b.1.1.1 61636 1nwaA 203 5.86e+01 d.58.28.1 86295 1ctn 540 5.87e+01 1ctn b.1.18.2,c.1.8.5,d.26.3.1 21876,29005,38439 1fx8A 281 5.88e+01 f.19.1.1 43651 1ldfA 281 5.88e+01 f.19.1.1 73845 1qlpA 394 5.90e+01 1ovaA e.1.1.1 42628 1u2fA 90 6.00e+01 1u2fA d.58.7.1 39168 1wgkA 114 6.00e+01 1xq6A 253 6.04e+01 1b47A 304 6.12e+01 2cblA a.39.1.7,a.48.1.1,d.93.1.1 17381,17775,40529 2ayuA 417 6.36e+01 1n5nA 180 6.45e+01 d.167.1.1 85336 1k4nA 192 6.54e+01 d.32.1.5 72059 1f4tA 368 6.55e+01 1f4tA a.104.1.1 18973 1quvA 578 6.65e+01 1quvA e.8.1.4 43119 1sro 76 6.71e+01 1sro b.40.4.5 25327 1edqA 540 6.74e+01 1ctn b.1.18.2,c.1.8.5,d.26.3.1 21873,29002,38436 1k9tA 540 6.75e+01 b.1.18.2,c.1.8.5,d.26.3.1 77298,77299,77300 1j8uA 325 6.78e+01 d.178.1.1 71611 1theA 260 6.93e+01 1theB d.3.1.1 37056 2por 301 6.94e+01 2por f.4.3.1 43759 1umwA 237 7.02e+01 d.223.1.2,d.223.1.2 99631,99632 1mz4A 137 7.12e+01 a.3.1.1 91496 1py5A 326 7.25e+01 d.144.1.7 104389 1qynA 153 7.31e+01 d.33.1.1 96597 2a0iA 330 7.34e+01 1lvmA 229 7.38e+01 b.47.1.3 78243 1ihcA 188 7.39e+01 1di6A c.57.1.1 62379 1pls 113 7.54e+01 1pls b.55.1.1 26965 1jljA 189 7.55e+01 c.57.1.1 63169 1apq 53 7.79e+01 1apq g.3.11.1 44324 1pms 136 7.83e+01 1awe b.55.1.1 26966 1kn6A 90 7.91e+01 d.58.3.3 72770 1kal 29 8.14e+01 g.3.3.1 44077 1ysc 421 8.25e+01 1ivyA c.69.1.5 34652 1kufA 203 8.36e+01 d.92.1.9 73007 1f5aA 513 8.42e+01 1fa0B d.58.16.1,a.160.1.1,d.218.1.3 39337,75835,75836 1q79A 514 8.54e+01 a.160.1.1,d.218.1.3,d.58.16.1 104548,104549,104550 1g40A 244 8.61e+01 1e5gA g.18.1.1,g.18.1.1,g.18.1.1,g.18.1.1 44823,44824,44825,44826 1mi3A 322 8.67e+01 c.1.7.1 91274 1jjzA 29 8.79e+01 g.3.3.1 71699 1k8cA 322 8.81e+01 c.1.7.1 72172