# List of top-scoring protein chains for t06-100-30-str2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1mqeA 207 1.49e-01 d.113.1.1 91394 1sx5A 244 2.81e-01 c.52.1.2 99023 1qwtA 255 2.84e-01 b.26.1.3 96501 1lk9A 448 3.11e-01 c.67.1.1 78057 1os8A 223 5.35e-01 b.47.1.1 93481 2aegA 268 6.14e-01 1vd3A 217 6.96e-01 1twyA 290 7.98e-01 1vheA 373 1.41e+00 b.49.3.1,c.56.5.4 100669,100670 1oa4A 222 1.46e+00 b.29.1.11 86731 1kk1A 410 1.49e+00 b.43.3.1,b.44.1.1,c.37.1.8 72634,72635,72636 1kcfA 258 1.56e+00 a.140.2.1,c.55.3.7 68434,68435 2bbhA 269 1.57e+00 1n08A 163 1.62e+00 b.43.5.1 79730 1ng2A 193 1.77e+00 b.34.2.1,b.34.2.1 85660,85661 2ahmE 203 1.79e+00 1wyxA 69 1.85e+00 1bb9 115 1.87e+00 1bb9 b.34.2.1 24554 1se8A 301 2.08e+00 b.40.4.3 105448 1pc3A 350 2.37e+00 c.94.1.1 104102 1gttA 429 2.56e+00 d.177.1.1,d.177.1.1 70529,70530 1sjyA 159 2.77e+00 d.113.1.1 98900 1jmuB 666 2.85e+00 1k8kC 372 3.09e+00 b.69.4.1 68308 1a73A 163 3.12e+00 1a73A d.4.1.3 37145 1j2gA 319 4.59e+00 d.96.1.4,d.96.1.4,d.96.1.4,d.96.1.4,d.96.1.4 103824,103825,103826,103827,103828 1hfuA 503 4.93e+00 b.6.1.3,b.6.1.3,b.6.1.3 65827,65828,65829 1w0nA 131 5.27e+00 1eajA 126 5.33e+00 1f5wA b.1.1.1 59401 1u24A 337 5.58e+00 1d3gA 367 6.00e+00 1d3gA c.1.4.1 28600 1md6A 154 6.27e+00 b.42.1.2 91242 1cjaA 342 6.42e+00 1cjaA d.144.1.3 41708 1iybA 208 6.61e+00 d.124.1.1 90720 1uwsA 489 6.92e+00 c.1.8.4 108073 1pm4A 119 7.27e+00 b.135.1.1 94891 1qexA 288 7.31e+00 1qexA b.32.1.1 24425 1x3eA 165 7.31e+00 2c43A 323 7.42e+00 1k8kA 418 7.54e+00 c.55.1.1,c.55.1.1 68305,68306 3ullA 132 7.58e+00 3ullA b.40.4.3 25282 1ikpA 613 7.78e+00 b.29.1.7,d.166.1.1,f.1.5.1 66182,66183,66184 1bw0A 416 8.37e+00 1bw0A c.67.1.1 34385 2cqeA 98 8.57e+00 1hn3A 40 8.63e+00 j.91.1.1 65892 1xmkA 79 8.78e+00 1gqzA 274 9.50e+00 d.21.1.1,d.21.1.1 83311,83312 2cx1A 187 9.68e+00 1fthA 122 9.95e+00 d.150.1.2 60028 2bu3A 254 1.02e+01 2d3jA 157 1.05e+01 1nscA 390 1.07e+01 2qwc b.68.1.1 27591 1vjvA 415 1.07e+01 d.3.1.9 108632 2cb5A 453 1.07e+01 3gcb d.3.1.1 37035 1vzoA 355 1.10e+01 d.144.1.7 108971 1vjyA 303 1.11e+01 d.144.1.7 108633 2gkeA 274 1.13e+01 1kutA 230 1.19e+01 d.143.1.1 73017 1u3wA 374 1.19e+01 1f0lA 535 1.26e+01 1ddt b.2.1.1,d.166.1.1,f.1.2.1 22377,42239,43382 1guiA 155 1.33e+01 b.18.1.14 76351 2awfA 172 1.37e+01 1w0dA 337 1.45e+01 3gcb 470 1.48e+01 3gcb d.3.1.1 37032 1wb9A 800 1.68e+01 1q25A 432 1.83e+01 b.64.1.1,b.64.1.1,b.64.1.1 104493,104494,104495 1paz 123 1.83e+01 1bqk b.6.1.1 22878 1uwfA 158 1.89e+01 1pht 85 1.91e+01 1ckaA b.34.2.1 24483 2bv5A 282 1.93e+01 1v97A 1332 2.02e+01 a.56.1.1,d.15.4.2,d.41.1.1,d.87.2.1,d.133.1.1,d.145.1.3 108436,108437,108438,108439,108440,108441 1wtaA 275 2.06e+01 2booA 247 2.09e+01 1e0nA 27 2.11e+01 b.72.1.1 27807 2dp5A 332 2.15e+01 1r4pA 297 2.18e+01 d.165.1.2 97025 1dleA 298 2.22e+01 1dleA b.47.1.2 26312 1g3p 217 2.25e+01 1g3p b.37.1.1,b.37.1.1 24788,24789 1yf2A 425 2.29e+01 1l6pA 125 2.37e+01 b.1.17.1 73626 1lvwA 295 2.54e+01 c.68.1.6 84723 1y12A 165 2.65e+01 2agmA 167 2.69e+01 1rhfA 182 2.89e+01 b.1.1.1,b.1.1.4 97469,97470 1a6jA 163 2.91e+01 1a6jA d.112.1.1 40915 1yqzA 438 2.92e+01 1kn6A 90 3.01e+01 d.58.3.3 72770 1jjzA 29 3.02e+01 g.3.3.1 71699 1elvA 333 3.07e+01 5ptp b.47.1.2,g.18.1.1 59454,59455 1ok8A 394 3.11e+01 b.1.18.4,f.10.1.1 93236,93237 1r4xA 275 3.18e+01 b.1.10.3,d.105.1.2 97054,97055 1c7sA 858 3.24e+01 1qba b.1.18.2,b.2.2.3,c.1.8.6,d.92.2.1 21812,22408,29011,40410 1jvwA 167 3.34e+01 d.26.1.1 71907 1pot 325 3.39e+01 1pot c.94.1.1 35807 2por 301 3.42e+01 2por f.4.3.1 43759 1rxwA 336 3.42e+01 a.60.7.1,c.120.1.2 98059,98060 2g1lA 104 3.46e+01 3dfr 162 3.58e+01 3dfr c.71.1.1 34880 1mfgA 95 3.60e+01 b.36.1.1 79043 2sak 121 3.74e+01 2sak d.15.5.1 37711 2nlrA 234 3.75e+01 2nlrA b.29.1.11 24344 1fiwA 290 3.77e+01 5ptp 1w6vA 141 3.77e+01 16pk 415 3.78e+01 16pk c.86.1.1 35454 2exnA 136 3.78e+01 1ohfA 644 3.90e+01 b.121.4.8 93014 1b8kA 119 3.92e+01 1bndA g.17.1.3 44795 1odmA 331 3.92e+01 b.82.2.1 86875 1lmq 129 4.02e+01 3lzt d.2.1.2 36588 1t9fA 187 4.10e+01 b.42.6.1 106710 1ruwA 69 4.15e+01 1lo6A 223 4.17e+01 b.47.1.2 74143 1va0A 239 4.25e+01 2g3aA 152 4.30e+01 2bjuA 453 4.33e+01 1v9tA 166 4.50e+01 b.62.1.1 108451 1sqeA 109 4.63e+01 d.58.4.5 105908 1k2eA 156 4.65e+01 d.113.1.1 72010 1zdrA 164 4.73e+01 1twfH 146 4.78e+01 2dlbA 80 4.85e+01 1zy7A 403 4.97e+01 2b4wA 315 4.98e+01 1r6vA 671 5.06e+01 1jeyA 609 5.10e+01 1jeqA b.131.1.1,c.62.1.3 90370,90371 2f6hX 419 5.10e+01 2pvbA 107 5.18e+01 1a75A a.39.1.4 17205 2bjfA 329 5.20e+01 1gk9B 557 5.28e+01 1u6zA 513 5.30e+01 1kid 203 5.36e+01 1derA c.8.5.1 30771 2fy6A 143 5.39e+01 1ugpB 226 5.40e+01 b.34.4.4 107832 1tueA 212 5.59e+01 c.37.1.20 107323 1qynA 153 5.65e+01 d.33.1.1 96597 1xovA 326 5.67e+01 1yoaA 159 5.71e+01 1faoA 126 5.72e+01 1faoA b.55.1.1 26974 1y55X 126 5.74e+01 2aq5A 402 5.76e+01 1w9sA 142 5.76e+01 1u5dA 108 5.78e+01 2c36A 285 5.83e+01 1lktA 104 5.91e+01 1lktA b.90.1.1 28398 1fsgA 233 5.97e+01 1qk3A c.61.1.1 34029 1gvp 87 6.10e+01 1gvp b.40.4.7 25369 2bmeA 186 6.11e+01 1k6iA 352 6.12e+01 c.2.1.2 68223 1w7lA 422 6.16e+01 c.67.1.1 109226 1xgkA 352 6.17e+01 1xdnA 277 6.28e+01 2crbA 97 6.44e+01 1u34A 119 6.50e+01 g.76.1.1 107634 1sglA 209 6.58e+01 d.124.1.1 105536 1mtyD 512 6.58e+01 1mhyD a.25.1.2 16742 1m1hA 248 6.61e+01 b.114.1.1,d.58.42.1 78415,78416 2bbkL 125 6.67e+01 2bbkL g.21.1.1 44882 1hl9A 449 6.77e+01 b.71.1.3,c.1.8.11 90650,90651 1i1qA 520 6.83e+01 1qdlA d.161.1.1 61543 1ft5A 211 6.85e+01 1bvb a.138.1.3 19681 1xsfA 108 6.87e+01 1g2bA 62 6.87e+01 1tud b.34.2.1 24488 1cs1A 386 6.97e+01 1ibjA c.67.1.3 34399 1g6gA 127 7.08e+01 1g6gA b.26.1.2 23916 1twfI 122 7.08e+01 1dynA 125 7.17e+01 1dynA b.55.1.1 26955 2evrA 246 7.20e+01 1q4vA 21 7.20e+01 1cghA 224 7.22e+01 1a7s b.47.1.2 26290 1e9gA 286 7.25e+01 1wgjA b.40.5.1 59393 1jm1A 204 7.26e+01 b.33.1.1 71745 1pc6A 146 7.27e+01 d.262.1.1 94430 1vq3A 94 7.61e+01 1amuA 563 7.64e+01 1amuA e.23.1.1 43351 1wzzA 334 7.66e+01 1sxvA 172 7.71e+01 1oygA 447 7.73e+01 b.67.2.2 93726 2gcfA 73 7.74e+01 1w0pA 781 7.83e+01 b.29.1.8,b.29.1.8,b.68.1.1 109038,109039,109040 2gjgA 248 7.91e+01 1na6A 404 7.93e+01 b.142.1.1,c.52.1.22 91748,91749 1tiqA 180 7.97e+01 d.108.1.1 107010 2bgcA 238 7.97e+01 1x1rA 178 8.24e+01 1o4sA 389 8.28e+01 c.67.1.1 86620 3bamA 213 8.49e+01 1bam c.52.1.3 33288 2c3vA 102 8.50e+01 1xweA 151 8.57e+01 1khqA 212 8.59e+01 d.3.1.1 90964 2fdbM 164 8.67e+01 2fpqA 444 8.68e+01 1pvxA 194 8.79e+01 1axkA b.29.1.11 24341 1wojA 214 8.90e+01