# List of top-scoring protein chains for t06-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1sx5A 244 7.56e-02 c.52.1.2 99023 1kcfA 258 2.86e-01 a.140.2.1,c.55.3.7 68434,68435 1d3gA 367 3.97e-01 1d3gA c.1.4.1 28600 1oa4A 222 7.83e-01 b.29.1.11 86731 1qwtA 255 1.38e+00 b.26.1.3 96501 2cqeA 98 1.47e+00 1pc3A 350 1.73e+00 c.94.1.1 104102 1twyA 290 2.17e+00 1vjvA 415 2.74e+00 d.3.1.9 108632 1gk9B 557 2.79e+00 1r4pA 297 2.87e+00 d.165.1.2 97025 1ng2A 193 2.92e+00 b.34.2.1,b.34.2.1 85660,85661 1hfuA 503 2.95e+00 b.6.1.3,b.6.1.3,b.6.1.3 65827,65828,65829 1e0cA 271 5.18e+00 1e0cA c.46.1.2,c.46.1.2 32717,32718 1md6A 154 5.26e+00 b.42.1.2 91242 1pm4A 119 5.36e+00 b.135.1.1 94891 1zgoA 223 5.78e+00 1mqeA 207 7.53e+00 d.113.1.1 91394 1eajA 126 7.63e+00 1f5wA b.1.1.1 59401 1bb9 115 7.69e+00 1bb9 b.34.2.1 24554 1os8A 223 8.84e+00 b.47.1.1 93481 2bbhA 269 8.85e+00 1wyxA 69 1.28e+01 2aq5A 402 1.34e+01 1uwfA 158 1.35e+01 1kutA 230 1.37e+01 d.143.1.1 73017 2ahmE 203 1.45e+01 1qynA 153 1.48e+01 d.33.1.1 96597 3gcb 470 1.51e+01 3gcb d.3.1.1 37032 1gvp 87 1.61e+01 1gvp b.40.4.7 25369 1gttA 429 1.72e+01 d.177.1.1,d.177.1.1 70529,70530 2a2kA 175 1.88e+01 1ton 235 2.08e+01 5ptp b.47.1.2 26307 1k8kC 372 2.14e+01 b.69.4.1 68308 2dp5A 332 2.14e+01 1avwB 171 2.21e+01 1wba b.42.4.1 25599 1yrrA 382 2.23e+01 1cg2A 393 2.24e+01 1cg2A c.56.5.4,d.58.19.1 33844,39360 1pvxA 194 2.24e+01 1axkA b.29.1.11 24341 1lk9A 448 2.30e+01 c.67.1.1 78057 1bs0A 384 2.73e+01 1bs0A c.67.1.4 34490 2fy6A 143 2.79e+01 1paz 123 2.94e+01 1bqk b.6.1.1 22878 1kn6A 90 2.97e+01 d.58.3.3 72770 1gqzA 274 2.98e+01 d.21.1.1,d.21.1.1 83311,83312 1fthA 122 3.01e+01 d.150.1.2 60028 2gkeA 274 3.06e+01 1ymkA 175 3.20e+01 1faoA 126 3.25e+01 1faoA b.55.1.1 26974 1uwsA 489 3.28e+01 c.1.8.4 108073 16pk 415 3.29e+01 16pk c.86.1.1 35454 1k8kA 418 3.44e+01 c.55.1.1,c.55.1.1 68305,68306 1cjaA 342 3.48e+01 1cjaA d.144.1.3 41708 2por 301 3.51e+01 2por f.4.3.1 43759 1xmkA 79 3.61e+01 1tueA 212 3.62e+01 c.37.1.20 107323 1j2gA 319 3.66e+01 d.96.1.4,d.96.1.4,d.96.1.4,d.96.1.4,d.96.1.4 103824,103825,103826,103827,103828 1ugpB 226 3.74e+01 b.34.4.4 107832 1eb6A 177 3.75e+01 d.92.1.12 64895 1m32A 366 3.80e+01 c.67.1.3 78508 1lgpA 116 3.80e+01 b.26.1.2 73890 2aegA 268 3.82e+01 1vq3A 94 3.89e+01 1kxoA 184 4.10e+01 b.60.1.1 84475 1yf2A 425 4.20e+01 2bmeA 186 4.21e+01 1vi6A 208 4.25e+01 c.23.15.1 100736 2fe5A 94 4.29e+01 1q4vA 21 4.34e+01 1jjzA 29 4.55e+01 g.3.3.1 71699 2rslA 140 4.64e+01 2rslA c.53.1.1 33345 2fmpA 335 4.82e+01 1kk1A 410 4.92e+01 b.43.3.1,b.44.1.1,c.37.1.8 72634,72635,72636 1hn3A 40 5.09e+01 j.91.1.1 65892 1vjyA 303 5.12e+01 d.144.1.7 108633 1bf5A 545 5.18e+01 1bg1A a.47.1.1,b.2.5.5,d.93.1.1 17766,22460,40526 2a74A 643 5.28e+01 2bjuA 453 5.28e+01 2bv5A 282 5.36e+01 2c43A 323 5.49e+01 1q45A 391 5.55e+01 c.1.4.1 95780 1oygA 447 5.57e+01 b.67.2.2 93726 1l7dA 384 5.57e+01 c.2.1.4,c.23.12.2 77774,77775 2bcqA 335 5.61e+01 1oh0A 131 5.79e+01 d.17.4.3 87004 2nlrA 234 5.88e+01 2nlrA b.29.1.11 24344 1a53 247 5.98e+01 1a53 c.1.2.4 28564 1z4eA 153 6.14e+01 1c3cA 429 6.17e+01 1c3cA a.127.1.1 19425 2csoA 127 6.24e+01 1fjgL 135 6.48e+01 1fjfL b.40.4.5 25346 2bjfA 329 6.50e+01 1wtaA 275 6.63e+01 1ukcA 522 6.71e+01 c.69.1.17 107911 4ubpB 126 6.80e+01 1ubpB b.85.3.1 28345 2f2lA 167 7.08e+01 1wocA 103 7.09e+01 1vd3A 217 7.23e+01 1x3eA 165 7.25e+01 2fdoA 94 7.35e+01 1y12A 165 7.41e+01 1x1rA 178 7.47e+01 1cghA 224 7.48e+01 1a7s b.47.1.2 26290 1s5jA 847 7.58e+01 1j5wA 298 7.61e+01 d.104.1.1 71589 1w6vA 141 7.97e+01 1hl9A 449 8.01e+01 b.71.1.3,c.1.8.11 90650,90651 1omoA 322 8.04e+01 c.2.1.13 104017 1va0A 239 8.22e+01 1ahsA 126 8.23e+01 1ahsA b.19.1.1 23794 1e0nA 27 8.45e+01 b.72.1.1 27807 1rf6A 427 8.45e+01 d.68.2.2 97366 1vjoA 393 8.64e+01 c.67.1.3 100827 1w0nA 131 8.73e+01 2a1kA 233 8.90e+01