a2m2html output for tmp.a2m

Citations (SAM, SAM-T99, HMMs)

R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting remote protein homologies, Bioinformatics 14(10):846-856, 1998.
A. Krogh et al., Hidden Markov models in computational biology: Applications to protein modeling, JMB 235:1501-1531, Feb 1994.

Sequence numbers correspond to the following labels:

- T0320
- gi|6320159|ref|NP_010239.1|_210:306 Flavin adenine dinucleotide (FAD) synthetase, performs the second step in synthesis of FAD from riboflavin; Fad1p [Saccharomyces cerevisiae]
- gi|45270204|gb|AAS56483.1| YDL045C [Saccharomyces cerevisiae]
- gi|1279671|emb|CAA96444.1| FAD synthetase [Saccharomyces cerevisiae]
- gi|1431034|emb|CAA98604.1| FAD1 [Saccharomyces cerevisiae]
- gi|729461|sp|P38913|FAD1_YEAST FAD synthetase (FMN adenylyltransferase) (FAD pyrophosphorylase) (Flavin adenine dinucleotide synthetase) [Taxonomy]
- gi|520745|gb|AAA65730.1| FAD synthetase [Taxonomy]
- gi|50291705|ref|XP_448285.1|_209:303 unnamed protein product [Candida glabrata]
- gi|49527597|emb|CAG61246.1| unnamed protein product [Candida glabrata CBS138]
- gi|50309093|ref|XP_454552.1|_213:312 unnamed protein product [Kluyveromyces lactis]
- gi|49643687|emb|CAG99639.1| unnamed protein product [Kluyveromyces lactis NRRL Y-1140]
- gi|44983843|gb|AAS52879.1|_210:315 AER198Wp [Ashbya gossypii ATCC 10895]
- gi|45190801|ref|NP_985055.1| AER198Wp [Eremothecium gossypii]

                 10        20             30                 40        
                 |         |              |                  |        
   1 ...NEPICGLYGKGFTSIGGINNSLPNPHL.....RKD..SNN.PA.L.....HFEWEIIHAFGK
   2 lysNEPICGLYGKGFTSIGGINNSLPNPHL.....RKD..SNN.PA.L.....HFEWEIIHAFGK
   3 lysNEPICELYRYGFTSLGNVEETLPNPHL.....RKD..KNStPLkL.....NFEWEIENRY-K
   4 lysGEEVCGLYEMGFTSLGSVNNTLRNPYL.....RIP..EPI.GS.Mtk8hsDFQWEIENNYRG
   5 lysGEEICGLYQVGFTSIGGINSTTRNPYLla7atEEGtvSNE.ER.Inn...HFTWEISNAYGL


      50          60        70        80        90         
      |           |         |         |         |         
   1 DAEGER..SSAINTSPISVVDKERFSKYHDNYYPGWYLVDDTLERAGRIKN..
   2 DAEGER..SSAINTSPISVVDKERFSKYHDNYYPGWYLVDDTLERAGRIKN..
   3 HNEVTK..AEPI---PIADEDLVKIENLHEDYYPGWYLVDDKLERAGRIKKk.
   4 DSN-MH..CNEINENDLNTIKQHDSSEFH----PGWYLTKDEWERAGRLARkv
   5 EQADDKphCSALTDDDLRLIA----SHSQQDYLPGWFLINDRWERAGRDSRa.