# List of top-scoring protein chains for T0320.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1eu8A 409 2.53e-02 1eu8A c.94.1.1 59502 1twyA 290 1.29e+00 1uswA 260 2.31e+00 c.69.1.17 99895 2bjhA 260 2.32e+00 1uwcA 261 2.33e+00 c.69.1.17 100101 1d3gA 367 5.51e+00 1d3gA c.1.4.1 28600 2b0mA 393 5.86e+00 1md6A 154 7.77e+00 b.42.1.2 91242 1shyA 234 1.03e+01 b.47.1.2 105564 1ugvA 72 1.03e+01 b.34.2.1 99367 1si5H 240 1.04e+01 1rvkA 382 1.11e+01 c.1.11.2,d.54.1.1 97928,97929 2anlA 327 1.14e+01 1uumA 372 1.24e+01 c.1.4.1 100010 1oqvA 192 1.32e+01 d.24.1.2 87320 1qs8A 329 1.36e+01 1smrA b.50.1.2 26887 1miqA 375 1.62e+01 b.50.1.2 79151 1ofcX 304 1.64e+01 a.4.1.3,a.4.1.13,a.187.1.1 92826,92827,92828 1j2fA 258 1.72e+01 b.26.1.3 90785 1gd6A 119 1.83e+01 3lzt d.2.1.2 60440 1zclA 180 1.83e+01 1xm2A 173 1.86e+01 1qynA 153 1.93e+01 d.33.1.1 96597 1fiqA 219 2.08e+01 1qj2A a.56.1.1,d.15.4.2 17912,37697 1wtaA 275 2.09e+01 1zckA 154 2.17e+01 1gvhA 396 2.17e+01 a.1.1.2,b.43.4.2,c.25.1.5 70601,70602,70603 1rxdA 159 2.18e+01 1x24A 180 2.23e+01 1z6cA 87 2.28e+01 1pypA 285 2.28e+01 1qwtA 255 2.34e+01 b.26.1.3 96501 1ivyA 452 2.43e+01 1ivyA c.69.1.5 34654 1b10A 142 2.47e+01 1b10A d.6.1.1 37306 1j46A 85 2.50e+01 a.21.1.1 66372 1j47A 85 2.52e+01 a.21.1.1 66373 1wxtA 68 2.55e+01 1hryA 76 2.66e+01 1hryA a.21.1.1 16429 1w6yA 131 2.70e+01 1i6pA 220 2.71e+01 1ddzA c.53.2.1 61848 1zuwA 272 2.75e+01 1c7hA 131 2.82e+01 1opy d.17.4.3 38117 1jzdC 132 2.82e+01 b.1.17.1 84261 1z5yD 143 2.83e+01 1cskA 71 2.89e+01 1ckaA b.34.2.1 24513 2fyiA 228 2.93e+01 2cqeA 98 3.04e+01 1ls5A 328 3.11e+01 b.50.1.2 74240 1sqjA 789 3.16e+01 b.69.13.1,b.69.13.1 105918,105919 1oa4A 222 3.20e+01 b.29.1.11 86731 1tpxA 121 3.31e+01 d.6.1.1 107189 1y1uA 585 3.49e+01 1jegA 83 3.50e+01 b.34.2.1 66610 1rm6B 324 3.54e+01 1ea2A 131 3.68e+01 d.17.4.3 64860 1ohoA 131 3.71e+01 1dmqA 131 3.77e+01 1opy d.17.4.3 38116 1oh0A 131 3.80e+01 d.17.4.3 87004 2b32A 131 3.83e+01 1dx0A 219 4.37e+01 1b10A d.6.1.1 37324 1mioB 458 4.59e+01 1qguB c.92.2.3 35602 1cqsA 131 4.60e+01 d.17.4.3 83165 1xmkA 79 4.63e+01 1sd4A 126 4.90e+01 a.4.5.39 105428 1yvvA 336 5.56e+01 1w02A 131 5.59e+01 d.17.4.3 108981 1vzzA 131 5.73e+01 d.17.4.3 108977 2crbA 97 5.76e+01 1w00A 131 5.79e+01 1y6dA 120 5.98e+01 1p6xA 334 6.03e+01 c.37.1.1 94195 1fkcA 142 6.16e+01 1b10A d.6.1.1 37319 1qm0A 143 6.23e+01 1b10A d.6.1.1 37317 1ov3A 138 6.43e+01 b.34.2.1,b.34.2.1 87451,87452 1y96A 86 6.66e+01 2lefA 86 6.75e+01 2lefA a.21.1.1 16433 1ukcA 522 7.14e+01 c.69.1.17 107911 1nwvA 129 7.14e+01 g.18.1.1,g.18.1.1 86304,86305 1wlpB 138 7.37e+01 1u3oA 82 7.47e+01 1fx3A 169 7.49e+01 1fx3B d.33.1.1 38524 1v33A 366 7.61e+01 d.264.1.1 100278 1jewR 120 7.62e+01 i.6.1.1 66618 1kacB 124 7.84e+01 1neu b.1.1.1 19707 1tjtA 250 7.86e+01 1ve1A 304 7.90e+01 1rztA 331 7.93e+01 a.60.6.1,a.60.12.1,d.218.1.2 98224,98225,98226 1xsnA 335 7.94e+01 1wkuA 254 7.95e+01 2bcqA 335 7.97e+01 1lf2A 331 7.99e+01 b.50.1.2 77914 1s1nA 68 8.04e+01 1eajA 126 8.08e+01 1f5wA b.1.1.1 59401 1rsfA 126 8.08e+01 b.1.1.1 97809 1y9iA 178 8.19e+01 1x40A 91 8.28e+01 1y71A 130 8.35e+01 1yrrA 382 8.37e+01 1qlxA 210 8.49e+01 1b10A d.6.1.1 37311 1dwyA 112 8.56e+01 1b10A d.6.1.1 37321 1eufA 227 8.62e+01 5ptp b.47.1.2 59506 1bpb 248 8.65e+01 1bpyA a.60.12.1,d.218.1.2 75811,75812 1a45 173 8.66e+01 1amm b.11.1.1,b.11.1.1 23602,23603 1rpl 251 8.68e+01 1bpyA a.60.12.1,d.218.1.2 75933,75934 1jn3A 251 8.77e+01 1bpyA a.60.12.1,d.218.1.2 75864,75865 1x1rA 178 8.93e+01