# List of top-scoring protein chains for t04-100-30-stride-ebghtl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1sx5A 244 3.91e-02 c.52.1.2 99023 1eonA 245 5.93e-02 1rvaA c.52.1.2 33238 1rvaA 244 7.26e-02 1rvaA c.52.1.2 33240 1qwtA 255 5.19e-01 b.26.1.3 96501 2cqeA 98 6.61e-01 1twyA 290 1.71e+00 1cskA 71 1.75e+00 1ckaA b.34.2.1 24513 1yvvA 336 3.06e+00 1kcfA 258 4.15e+00 a.140.2.1,c.55.3.7 68434,68435 1ov3A 138 4.37e+00 b.34.2.1,b.34.2.1 87451,87452 1lk9A 448 4.49e+00 c.67.1.1 78057 1md6A 154 4.76e+00 b.42.1.2 91242 1a65A 504 6.03e+00 1a65A b.6.1.3,b.6.1.3,b.6.1.3 23148,23149,23150 2bbhA 269 6.27e+00 1gk9B 557 6.32e+00 1n08A 163 6.65e+00 b.43.5.1 79730 1d3gA 367 6.71e+00 1d3gA c.1.4.1 28600 1ng2A 193 7.03e+00 b.34.2.1,b.34.2.1 85660,85661 2b0mA 393 7.21e+00 1hfuA 503 7.61e+00 b.6.1.3,b.6.1.3,b.6.1.3 65827,65828,65829 1sqjA 789 7.78e+00 b.69.13.1,b.69.13.1 105918,105919 2rslA 140 8.47e+00 2rslA c.53.1.1 33345 1pm4A 119 9.32e+00 b.135.1.1 94891 1wlpB 138 9.52e+00 1h6zA 913 9.54e+00 c.1.12.2,c.8.1.1,d.142.1.5 70906,70907,70908 1j2gA 319 9.65e+00 d.96.1.4,d.96.1.4,d.96.1.4,d.96.1.4,d.96.1.4 103824,103825,103826,103827,103828 1oa4A 222 1.01e+01 b.29.1.11 86731 1pfzA 380 1.01e+01 1smrA b.50.1.2 26881 1e0cA 271 1.12e+01 1e0cA c.46.1.2,c.46.1.2 32717,32718 1fo4A 1332 1.26e+01 a.56.1.1,d.15.4.2,d.41.1.1,d.87.2.1,d.133.1.1,d.145.1.3 17910,37695,38586,40227,41416,41758 1pc3A 350 1.29e+01 c.94.1.1 104102 1e3aB 560 1.32e+01 1ajqB 1qynA 153 1.44e+01 d.33.1.1 96597 1bb9 115 1.46e+01 1bb9 b.34.2.1 24554 1v97A 1332 1.46e+01 a.56.1.1,d.15.4.2,d.41.1.1,d.87.2.1,d.133.1.1,d.145.1.3 108436,108437,108438,108439,108440,108441 1k8kA 418 1.48e+01 c.55.1.1,c.55.1.1 68305,68306 1u3oA 82 1.53e+01 1uumA 372 1.77e+01 c.1.4.1 100010 1gttA 429 1.83e+01 d.177.1.1,d.177.1.1 70529,70530 1u24A 337 1.84e+01 1i7oA 429 1.94e+01 1i7oA d.177.1.1,d.177.1.1 61893,61894 2fe5A 94 2.12e+01 1xzzA 246 2.14e+01 1bpyA 335 2.18e+01 1bpyA a.60.6.1,a.60.12.1,d.218.1.2 17980,75819,75820 1p5hA 428 2.19e+01 c.123.1.1 87802 2bcqA 335 2.20e+01 1o94A 729 2.27e+01 c.1.4.1,c.3.1.1,c.4.1.1 81200,81201,81202 1i4mA 108 2.31e+01 d.6.1.1 66025 1s7hA 200 2.36e+01 d.58.48.2 105349 1wtaA 275 2.39e+01 1paz 123 2.46e+01 1bqk b.6.1.1 22878 1xsnA 335 2.46e+01 1w0dA 337 2.47e+01 1a2zA 220 2.52e+01 1a2zA c.56.4.1 33794 1rztA 331 2.57e+01 a.60.6.1,a.60.12.1,d.218.1.2 98224,98225,98226 1vjvA 415 2.57e+01 d.3.1.9 108632 1bs0A 384 2.62e+01 1bs0A c.67.1.4 34490 1gcb 454 2.81e+01 3gcb d.3.1.1 37034 1va0A 239 2.92e+01 1wyxA 69 2.96e+01 1jmuB 666 2.97e+01 1guiA 155 3.03e+01 b.18.1.14 76351 1xmkA 79 3.04e+01 1fiqC 763 3.07e+01 1fiqC d.41.1.1,d.133.1.1 38588,41418 1vhzA 198 3.13e+01 d.113.1.1 100718 1tv9A 335 3.14e+01 1kk1A 410 3.18e+01 b.43.3.1,b.44.1.1,c.37.1.8 72634,72635,72636 1vheA 373 3.51e+01 b.49.3.1,c.56.5.4 100669,100670 1na6A 404 3.65e+01 b.142.1.1,c.52.1.22 91748,91749 1viaA 175 3.93e+01 c.37.1.2 100754 1eaf 243 4.01e+01 1eaf c.43.1.1 32617 1eylA 186 4.04e+01 1wba b.42.4.1 25593 1n0lA 224 4.09e+01 b.1.11.1,b.7.2.1 79744,79745 1zpuA 534 4.09e+01 1r4pA 297 4.12e+01 d.165.1.2 97025 1mv3A 213 4.16e+01 b.34.2.1 91468 1vqb 87 4.20e+01 1gvp b.40.4.7 25370 1gvp 87 4.24e+01 1gvp b.40.4.7 25369 1g3mA 294 4.44e+01 c.37.1.5 83268 1oyc 400 4.57e+01 1oyc c.1.4.1 28603 1y96A 86 4.63e+01 1vjyA 303 4.67e+01 d.144.1.7 108633 1ugpB 226 4.81e+01 b.34.4.4 107832 2awfA 172 4.85e+01 1d02A 202 4.87e+01 1d02A c.52.1.8 33313 2bl9A 238 4.88e+01 1ireB 228 4.90e+01 b.34.4.4 76770 2a2kA 175 4.92e+01 2por 301 5.02e+01 2por f.4.3.1 43759 1wmjA 130 5.10e+01 1k8kC 372 5.20e+01 b.69.4.1 68308 2fy6A 143 5.22e+01 2bv5A 282 5.27e+01 1omoA 322 5.27e+01 c.2.1.13 104017 1vi6A 208 5.27e+01 c.23.15.1 100736 1fl1A 230 5.27e+01 1at3A b.57.1.1 27023 1dqzA 280 5.39e+01 1dqyA c.69.1.3 34638 1vllA 334 5.44e+01 c.2.1.13 108834 1y71A 130 5.45e+01 1wyuB 474 5.49e+01 1egiA 147 5.70e+01 1eggA d.169.1.1 42331 1py5A 326 5.72e+01 d.144.1.7 104389 3gcb 470 5.75e+01 3gcb d.3.1.1 37032 2gkeA 274 5.82e+01 1ymkA 175 5.86e+01 1u2fA 90 5.96e+01 1u2fA d.58.7.1 39168 2gnoA 305 6.22e+01 2bjuA 453 6.25e+01 1eajA 126 6.26e+01 1f5wA b.1.1.1 59401 1djnA 729 6.36e+01 2tmdA c.1.4.1,c.3.1.1,c.4.1.1 28612,30313,30598 1yqzA 438 6.41e+01 1fcqA 350 6.41e+01 c.1.8.9 65006 1mpp 361 6.50e+01 2rmpA b.50.1.2 26856 2cioA 212 6.51e+01 1klfB 279 6.55e+01 b.2.3.2,b.2.3.2 72684,72685 1v52A 133 6.60e+01 2fneA 117 6.70e+01 1ve9A 347 6.80e+01 c.4.1.2,d.16.1.3 100571,100572 1mixA 206 6.87e+01 a.11.2.1,b.55.1.5 79166,79167 2a6hD 1524 6.94e+01 1s99A 200 7.03e+01 2tmdA 729 7.07e+01 2tmdA c.1.4.1,c.3.1.1,c.4.1.1 28616,30317,30602 1n87A 56 7.18e+01 g.44.1.2 85390 1kutA 230 7.24e+01 d.143.1.1 73017 1t8tA 271 7.33e+01 c.37.1.5 106685 1aa8A 347 7.40e+01 1an9A 1z4eA 153 7.40e+01 1fx3A 169 7.47e+01 1fx3B d.33.1.1 38524 1khqA 212 7.52e+01 d.3.1.1 90964 1x1nA 524 7.59e+01 1bwzA 274 7.71e+01 1bwzA d.21.1.1,d.21.1.1 38337,38338 1ppn 212 7.77e+01 1cs8A d.3.1.1 37004 1hcnB 145 7.86e+01 1hcnB g.17.1.4 44810 1u5dA 108 7.88e+01 1an9A 340 7.92e+01 1an9A c.4.1.2,d.16.1.3 30617,37904 1kn6A 90 8.02e+01 d.58.3.3 72770 1hxrA 115 8.06e+01 1fwqA b.88.1.1 28392 1qunB 279 8.06e+01 b.2.3.2,b.2.3.2 22411,22412 1fknA 391 8.11e+01 1fknA b.50.1.2 26879 2bgcA 238 8.14e+01 1lktA 104 8.21e+01 1lktA b.90.1.1 28398 2a6aA 218 8.24e+01 2c9aA 259 8.36e+01 1cjaA 342 8.38e+01 1cjaA d.144.1.3 41708 1qb0A 211 8.40e+01 1c25 c.46.1.1 32699 1djqA 729 8.42e+01 2tmdA c.1.4.1,c.3.1.1,c.4.1.1 28614,30315,30600 1cghA 224 8.50e+01 1a7s b.47.1.2 26290 1gnwA 211 8.62e+01 1gnwA a.45.1.1,c.47.1.5 17727,33021 1vp6A 138 8.67e+01 1v9tA 166 8.75e+01 b.62.1.1 108451 1mtyD 512 8.97e+01 1mhyD a.25.1.2 16742 1ezvC 385 8.99e+01 1be3C f.32.1.1,f.21.1.2 75833,75834 1kb9C 385 8.99e+01 f.32.1.1,f.21.1.2 77315,77316 1oo4A 111 8.99e+01 d.93.1.1 87185