# List of top-scoring protein chains for t04-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1yvvA 336 7.24e-02 1sx5A 244 1.14e-01 c.52.1.2 99023 1kcfA 258 4.24e-01 a.140.2.1,c.55.3.7 68434,68435 2b0mA 393 5.50e-01 1d3gA 367 5.85e-01 1d3gA c.1.4.1 28600 1cskA 71 6.47e-01 1ckaA b.34.2.1 24513 1eonA 245 8.24e-01 1rvaA c.52.1.2 33238 1oa4A 222 1.14e+00 b.29.1.11 86731 1rvaA 244 1.35e+00 1rvaA c.52.1.2 33240 1qwtA 255 2.00e+00 b.26.1.3 96501 2cqeA 98 2.14e+00 1pc3A 350 2.50e+00 c.94.1.1 104102 1uumA 372 2.88e+00 c.1.4.1 100010 1a65A 504 2.98e+00 1a65A b.6.1.3,b.6.1.3,b.6.1.3 23148,23149,23150 1twyA 290 3.14e+00 1e3aB 560 3.78e+00 1ajqB 1vjvA 415 3.94e+00 d.3.1.9 108632 1gk9B 557 4.02e+00 1r4pA 297 4.13e+00 d.165.1.2 97025 1ng2A 193 4.20e+00 b.34.2.1,b.34.2.1 85660,85661 1hfuA 503 4.24e+00 b.6.1.3,b.6.1.3,b.6.1.3 65827,65828,65829 1mv3A 213 5.14e+00 b.34.2.1 91468 1ov3A 138 5.17e+00 b.34.2.1,b.34.2.1 87451,87452 1jhnA 424 5.67e+00 b.104.1.1,b.29.1.12 66722,70060 1y71A 130 5.73e+00 1u2fA 90 6.18e+00 1u2fA d.58.7.1 39168 1djnA 729 6.32e+00 2tmdA c.1.4.1,c.3.1.1,c.4.1.1 28612,30313,30598 1h6zA 913 6.34e+00 c.1.12.2,c.8.1.1,d.142.1.5 70906,70907,70908 1klfB 279 6.52e+00 b.2.3.2,b.2.3.2 72684,72685 1pfzA 380 6.76e+00 1smrA b.50.1.2 26881 1o94A 729 7.24e+00 c.1.4.1,c.3.1.1,c.4.1.1 81200,81201,81202 1e0cA 271 7.38e+00 1e0cA c.46.1.2,c.46.1.2 32717,32718 1qunB 279 7.38e+00 b.2.3.2,b.2.3.2 22411,22412 1md6A 154 7.51e+00 b.42.1.2 91242 1pm4A 119 7.64e+00 b.135.1.1 94891 1wlpB 138 8.10e+00 1ggxA 223 8.19e+00 1ggxA d.22.1.1 38367 1djqA 729 8.21e+00 2tmdA c.1.4.1,c.3.1.1,c.4.1.1 28614,30315,30600 1zgoA 223 8.24e+00 2tmdA 729 8.54e+00 2tmdA c.1.4.1,c.3.1.1,c.4.1.1 28616,30317,30602 1sqjA 789 9.04e+00 b.69.13.1,b.69.13.1 105918,105919 1u3oA 82 1.04e+01 1mqeA 207 1.07e+01 d.113.1.1 91394 1eajA 126 1.08e+01 1f5wA b.1.1.1 59401 1bb9 115 1.09e+01 1bb9 b.34.2.1 24554 1os8A 223 1.25e+01 b.47.1.1 93481 2bbhA 269 1.25e+01 1sgt 223 1.28e+01 5ptp b.47.1.1 25814 1eaf 243 1.36e+01 1eaf c.43.1.1 32617 1tr7A 164 1.74e+01 1wyxA 69 1.80e+01 2aq5A 402 1.90e+01 1uwfA 158 1.90e+01 1kutA 230 1.93e+01 d.143.1.1 73017 2bydA 323 1.96e+01 2ahmE 203 2.04e+01 1gcb 454 2.05e+01 3gcb d.3.1.1 37034 1qynA 153 2.08e+01 d.33.1.1 96597 3gcb 470 2.13e+01 3gcb d.3.1.1 37032 1bwzA 274 2.22e+01 1bwzA d.21.1.1,d.21.1.1 38337,38338 1vqb 87 2.25e+01 1gvp b.40.4.7 25370 1i7oA 429 2.27e+01 1i7oA d.177.1.1,d.177.1.1 61893,61894 1gvp 87 2.27e+01 1gvp b.40.4.7 25369 1gttA 429 2.41e+01 d.177.1.1,d.177.1.1 70529,70530 2a2kA 175 2.64e+01 1ton 235 2.91e+01 5ptp b.47.1.2 26307 1k8kC 372 3.00e+01 b.69.4.1 68308 2dp5A 332 3.01e+01 1avwB 171 3.09e+01 1wba b.42.4.1 25599 1yrrA 382 3.13e+01 1cg2A 393 3.14e+01 1cg2A c.56.5.4,d.58.19.1 33844,39360 1pvxA 194 3.14e+01 1axkA b.29.1.11 24341 1lk9A 448 3.22e+01 c.67.1.1 78057 1bs0A 384 3.82e+01 1bs0A c.67.1.4 34490 2fy6A 143 3.91e+01 1lf2A 331 4.02e+01 b.50.1.2 77914 1gowA 489 4.07e+01 1qvbA c.1.8.4 28981 1paz 123 4.11e+01 1bqk b.6.1.1 22878 1kn6A 90 4.15e+01 d.58.3.3 72770 1gqzA 274 4.17e+01 d.21.1.1,d.21.1.1 83311,83312 1fthA 122 4.20e+01 d.150.1.2 60028 2gkeA 274 4.27e+01 1ymkA 175 4.47e+01 1faoA 126 4.54e+01 1faoA b.55.1.1 26974 1uwsA 489 4.58e+01 c.1.8.4 108073 16pk 415 4.59e+01 16pk c.86.1.1 35454 1k8kA 418 4.79e+01 c.55.1.1,c.55.1.1 68305,68306 1cjaA 342 4.86e+01 1cjaA d.144.1.3 41708 2por 301 4.90e+01 2por f.4.3.1 43759 1xmkA 79 5.04e+01 1p1cA 199 5.04e+01 c.66.1.16 87669 1tueA 212 5.04e+01 c.37.1.20 107323 1j2gA 319 5.10e+01 d.96.1.4,d.96.1.4,d.96.1.4,d.96.1.4,d.96.1.4 103824,103825,103826,103827,103828 1ugpB 226 5.22e+01 b.34.4.4 107832 1eb6A 177 5.23e+01 d.92.1.12 64895 1ireB 228 5.24e+01 b.34.4.4 76770 1m32A 366 5.29e+01 c.67.1.3 78508 1lgpA 116 5.30e+01 b.26.1.2 73890 2aegA 268 5.32e+01 1vq3A 94 5.42e+01 1oyiA 82 5.68e+01 a.4.5.19 93729 1kxoA 184 5.71e+01 b.60.1.1 84475 1yf2A 425 5.84e+01 2bmeA 186 5.86e+01 1vi6A 208 5.92e+01 c.23.15.1 100736 1p5hA 428 5.92e+01 c.123.1.1 87802 2fe5A 94 5.97e+01 1q4vA 21 6.04e+01 1qb0A 211 6.27e+01 1c25 c.46.1.1 32699 1zclA 180 6.31e+01 1jjzA 29 6.34e+01 g.3.3.1 71699 1tv9A 335 6.43e+01 2rslA 140 6.45e+01 2rslA c.53.1.1 33345 1an9A 340 6.50e+01 1an9A c.4.1.2,d.16.1.3 30617,37904 2fmpA 335 6.70e+01 1kk1A 410 6.84e+01 b.43.3.1,b.44.1.1,c.37.1.8 72634,72635,72636 1iohA 21 6.89e+01 1tltA 319 6.91e+01 c.2.1.3,d.81.1.5 107135,107136 1hn3A 40 7.07e+01 j.91.1.1 65892 3rabA 169 7.10e+01 1ctqA c.37.1.8 32018 1vjyA 303 7.11e+01 d.144.1.7 108633 1bf5A 545 7.20e+01 1bg1A a.47.1.1,b.2.5.5,d.93.1.1 17766,22460,40526 2a74A 643 7.33e+01 2bjuA 453 7.34e+01 1py5A 326 7.39e+01 d.144.1.7 104389 2bv5A 282 7.44e+01 1bpyA 335 7.59e+01 1bpyA a.60.6.1,a.60.12.1,d.218.1.2 17980,75819,75820 2c43A 323 7.62e+01 1rztA 331 7.70e+01 a.60.6.1,a.60.12.1,d.218.1.2 98224,98225,98226 1q45A 391 7.71e+01 c.1.4.1 95780 1oygA 447 7.73e+01 b.67.2.2 93726 1l7dA 384 7.74e+01 c.2.1.4,c.23.12.2 77774,77775 2bcqA 335 7.78e+01 1cmiA 85 7.79e+01 1cmiA d.39.1.1 38551 1egiA 147 7.83e+01 1eggA d.169.1.1 42331 1oh0A 131 8.03e+01 d.17.4.3 87004 2nlrA 234 8.16e+01 2nlrA b.29.1.11 24344 1a53 247 8.29e+01 1a53 c.1.2.4 28564 1s7hA 200 8.33e+01 d.58.48.2 105349 1z4eA 153 8.51e+01 1c3cA 429 8.56e+01 1c3cA a.127.1.1 19425 2csoA 127 8.65e+01 1igs 248 8.71e+01 1a53 c.1.2.4 28565 1fjgL 135 8.98e+01 1fjfL b.40.4.5 25346