# List of top-scoring protein chains for t04-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1txyA 104 2.09e-01 1m8uA 173 5.19e-01 b.11.1.1,b.11.1.1 91233,91234 1wocA 103 6.24e-01 2cqeA 98 8.43e-01 1tueA 212 2.31e+00 c.37.1.20 107323 1upiA 225 2.35e+00 b.82.1.1 99757 1v1qA 134 2.71e+00 1xmkA 79 4.04e+00 1xwrA 97 4.34e+00 1k78A 149 5.28e+00 a.4.1.5,a.4.1.5 68255,68256 1uwcA 261 5.74e+00 c.69.1.17 100101 2bjhA 260 6.21e+00 1twyA 290 6.50e+00 2biiA 424 6.52e+00 1zirA 173 6.73e+00 1ukcA 522 7.72e+00 c.69.1.17 107911 1kxoA 184 9.23e+00 b.60.1.1 84475 1eajA 126 9.46e+00 1f5wA b.1.1.1 59401 6paxA 133 1.17e+01 6paxA a.4.1.5,a.4.1.5 64758,64759 1wlpB 138 1.18e+01 2c30A 321 1.25e+01 1pm4A 119 1.34e+01 b.135.1.1 94891 2crbA 97 1.56e+01 2azwA 148 1.72e+01 1wa5C 960 1.74e+01 1zs4A 83 1.75e+01 1cskA 71 1.77e+01 1ckaA b.34.2.1 24513 1ahsA 126 1.88e+01 1ahsA b.19.1.1 23794 4gcr 174 1.88e+01 1amm b.11.1.1,b.11.1.1 23589,23590 1z8fA 228 1.89e+01 1sd4A 126 2.03e+01 a.4.5.39 105428 1ywwA 85 2.08e+01 1xp3A 307 2.18e+01 1ov3A 138 2.21e+01 b.34.2.1,b.34.2.1 87451,87452 1x1rA 178 2.26e+01 1amm 174 2.28e+01 1amm b.11.1.1,b.11.1.1 23587,23588 2fclA 169 2.35e+01 1s4qA 228 2.67e+01 c.37.1.1 98507 1or7C 90 2.78e+01 a.180.1.1 87336 1n26A 325 2.95e+01 b.1.1.4,b.1.2.1,b.1.2.1 79850,79851,79852 1louA 101 3.09e+01 1ris d.58.14.1 39323 1reoA 486 3.11e+01 c.3.1.2,d.16.1.5 97325,97326 1ema 236 3.14e+01 1ema d.22.1.1 38339 1p8xA 344 3.17e+01 d.109.1.1,d.109.1.1,d.109.1.1 94365,94366,94367 1zhvA 134 3.28e+01 1xeeA 91 3.37e+01 1md6A 154 3.40e+01 b.42.1.2 91242 1wtaA 275 3.45e+01 1k2eA 156 3.48e+01 d.113.1.1 72010 1sjyA 159 3.65e+01 d.113.1.1 98900 1ocsA 162 3.77e+01 d.189.1.1 92776 3hhrB 203 3.78e+01 1axiB b.1.2.1,b.1.2.1 22005,22006 1zbqA 327 3.98e+01 1yn3A 98 4.02e+01 2aw2A 120 4.08e+01 1kn6A 90 4.11e+01 d.58.3.3 72770 1rw2A 152 4.14e+01 a.118.19.1 97961 1lkqA 21 4.18e+01 1xn5A 146 4.24e+01 1jcaA 21 4.27e+01 1c4oA 664 4.46e+01 1d2mA c.37.1.19,c.37.1.19 32415,32416 1xjuA 163 4.50e+01 1se8A 301 4.54e+01 b.40.4.3 105448 1eq6A 189 4.56e+01 1eq6A d.107.1.1 40796 2ewrA 170 4.56e+01 1iogA 21 4.65e+01 1ve1A 304 4.66e+01 1uw0A 117 4.67e+01 g.39.1.12 108063 1gz6A 319 4.74e+01 c.2.1.2 76410 1n08A 163 4.77e+01 b.43.5.1 79730 1k3mA 21 4.80e+01 1q4vA 21 4.87e+01 1g7aA 21 4.88e+01 1msoA 21 4.88e+01 1rxdA 159 4.89e+01 1xw7A 21 4.93e+01 1uf2C 421 5.26e+01 a.115.1.3,b.19.1.1 99291,99292 1oyiA 82 5.27e+01 a.4.5.19 93729 1iohA 21 5.38e+01 1rweA 21 5.38e+01 1tit 98 5.44e+01 1tit b.1.1.4 21716 1u3oA 82 5.46e+01 2bkaA 242 5.49e+01 1yozA 116 5.54e+01 1rh5A 436 5.90e+01 f.41.1.1 97464 1uisA 231 5.98e+01 d.22.1.1 99431 1bbpA 173 6.07e+01 1bbpA b.60.1.1 27147 1zckA 154 6.23e+01 1fp2A 352 6.26e+01 1fpxA a.4.5.29,c.66.1.12 59941,59942 1a2zA 220 6.45e+01 1a2zA c.56.4.1 33794 2fz4A 237 6.56e+01 1q0pA 223 6.59e+01 c.62.1.1 95507 2bydA 323 6.62e+01 1bb8 71 6.64e+01 2bb8 d.10.1.1 37478 2f9cA 334 6.71e+01 1o7nA 449 6.71e+01 b.33.1.2,d.129.3.3 81162,81163 2c0zA 216 6.79e+01 1oxdA 227 6.85e+01 d.22.1.1 93687 1wxiA 275 6.86e+01 1o7dE 126 7.10e+01 1pidA 21 7.17e+01 1axiB 236 7.20e+01 1axiB b.1.2.1,b.1.2.1 21997,21998 2awkA 228 7.25e+01 2bayA 61 7.32e+01 1xd3A 230 7.34e+01 2bn3A 21 7.44e+01 2c1lA 358 7.50e+01 1ll8A 114 7.63e+01 d.110.3.5 78089 1fnnA 389 7.71e+01 1fnnA a.4.5.11,c.37.1.20 16129,32426 1oh0A 131 7.76e+01 d.17.4.3 87004 2bmoA 447 7.77e+01 1eg9A 449 7.77e+01 1ndoA b.33.1.2,d.129.3.3 24443,41322 1repC 251 7.79e+01 1repC a.4.5.10,a.4.5.10 16125,16126 1f75A 249 7.83e+01 1f75A c.101.1.1 59662 1jhsA 188 7.95e+01 d.107.1.1 84172 1g1eB 89 7.99e+01 1g1eB a.59.1.1 17931 1vdeA 454 8.00e+01 1vdeA b.86.1.2,d.95.2.2,d.95.2.2 28378,40581,40582 2cb5A 453 8.00e+01 3gcb d.3.1.1 37035 1x24A 180 8.08e+01 1vqb 87 8.09e+01 1gvp b.40.4.7 25370 1u2fA 90 8.13e+01 1u2fA d.58.7.1 39168 2bg5A 324 8.20e+01 1ls9A 91 8.22e+01 a.3.1.1 78177 1dynA 125 8.46e+01 1dynA b.55.1.1 26955 1j55A 95 8.59e+01 a.39.1.2 77078 1gvhA 396 8.64e+01 a.1.1.2,b.43.4.2,c.25.1.5 70601,70602,70603 1odfA 290 8.79e+01 c.37.1.6 92782 1sqjA 789 8.82e+01 b.69.13.1,b.69.13.1 105918,105919