# List of top-scoring protein chains for t06-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1weoA 93 3.55e-01 1it2A 146 5.35e-01 a.1.1.2 66365 2d5xA 141 1.29e+00 1eswA 500 2.06e+00 1cwyA c.1.8.1 59500 1rlyA 60 3.31e+00 g.41.3.1 104988 1yk4A 52 4.07e+00 2fp1A 166 4.44e+00 2fmpA 335 4.64e+00 2carA 196 5.19e+00 1iro 54 5.66e+00 1rb9 g.41.5.1 45223 1j2zA 270 5.90e+00 b.81.1.1 90805 1rb9 53 6.45e+00 1rb9 g.41.5.1 45214 1rdg 53 6.79e+00 1rb9 g.41.5.1 45221 1jigA 146 7.44e+00 a.25.1.1 71685 1zu4A 320 7.62e+00 1irdA 141 8.30e+00 a.1.1.2 66286 1tig 94 8.91e+00 1tig d.68.1.1 39566 1msc 129 9.70e+00 1msc d.85.1.1 40039 2a14A 263 1.00e+01 2lhb 149 1.04e+01 2fal a.1.1.2 15597 1wy6A 172 1.15e+01 1j8mF 297 1.15e+01 1ng1 a.24.13.1,c.37.1.10 62742,62743 1w9yA 319 1.22e+01 2f4mA 295 1.24e+01 2axwA 134 1.27e+01 1vb5A 276 1.36e+01 1zin 217 1.37e+01 1zin c.37.1.1,g.41.2.1 31915,45178 2bw3A 534 1.39e+01 2cobA 70 1.42e+01 1lvaA 258 1.44e+01 a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35 74276,74277,74278,74279 1vj7A 393 1.75e+01 a.211.1.1,d.218.1.8 100801,100802 1brfA 53 1.75e+01 1rb9 g.41.5.1 45236 1s3eA 520 1.86e+01 c.3.1.2,d.16.1.5 98426,98427 1dvpA 220 1.88e+01 1dvpA a.118.9.2,g.50.1.1 19216,45358 1z1zA 131 1.88e+01 1v2bA 177 1.96e+01 d.107.1.2 108279 1f7dA 136 1.98e+01 1dun b.85.4.1 28353 2gdm 153 1.98e+01 2gdm a.1.1.2 15212 1y1pA 342 1.98e+01 1qs1A 462 2.02e+01 1qs1A d.166.1.1,d.166.1.1 42260,42261 1k5nB 100 2.09e+01 b.1.1.2 77268 2a8eA 220 2.13e+01 1c02A 166 2.20e+01 1qspA a.24.10.2 16633 1gnkA 112 2.23e+01 2pii d.58.5.1 39073 1jr8A 117 2.29e+01 a.24.15.1 67115 1pp7U 131 2.37e+01 a.4.5.44 94973 1ouoA 210 2.39e+01 d.4.1.6 93554 1kicA 339 2.41e+01 c.70.1.1 72510 1rw1A 114 2.43e+01 1scfA 273 2.45e+01 1exzA a.26.1.2 16873 1pl4A 198 2.54e+01 a.2.11.1,d.44.1.1 94854,94855 1t77A 414 2.60e+01 4bcl 366 2.64e+01 4bcl b.75.1.1 27968 1uyjA 296 2.64e+01 f.8.1.2 108143 1gjwA 637 2.66e+01 b.71.1.1,c.1.8.1 60582,60583 2cvjA 180 2.68e+01 1b7yB 785 2.69e+01 1pysB a.6.1.1,a.6.1.1,b.40.4.4,d.58.13.1,d.104.1.1,d.138.1.1 16301,16302,25312,39311,40780,41456 1neeA 138 2.71e+01 d.241.1.1,g.59.1.1 91841,91842 1reqA 727 2.75e+01 1reqA c.1.19.1,c.23.6.1 29620,31247 1twfL 70 2.78e+01 1vp6A 138 2.82e+01 1uz5A 402 2.98e+01 b.85.6.1,b.103.1.1,c.57.1.2 100217,100218,100219 1ne8A 117 3.01e+01 b.34.6.2 80424 1lv7A 257 3.02e+01 c.37.1.20 78232 1xtoA 311 3.03e+01 1eqfA 280 3.18e+01 1eqfA a.29.2.1,a.29.2.1 16972,16973 1v54F 98 3.21e+01 g.41.5.3 100327 1f0lA 535 3.22e+01 1ddt b.2.1.1,d.166.1.1,f.1.2.1 22377,42239,43382 1wer 334 3.31e+01 1wer a.116.1.2 19108 1w33A 181 3.40e+01 1gmyA 261 3.43e+01 d.3.1.1 76236 1w27A 714 3.43e+01 1u5kA 244 3.44e+01 1woyA 500 3.48e+01 1rie 129 3.53e+01 1rie b.33.1.1 24427 1ve2A 235 3.59e+01 1f6fA 199 3.68e+01 1f6fA a.26.1.1 16839 1gtvA 214 3.69e+01 c.37.1.1 70537 1aa6 715 3.69e+01 2napA b.52.2.2,c.81.1.1 26916,35324 1w8kA 447 3.81e+01 1xnzA 264 3.84e+01 1pixA 587 3.91e+01 c.14.1.4 94708 1ttuA 477 4.03e+01 b.1.18.1,b.2.5.8,b.42.7.1 107305,107306,107307 1kq6A 141 4.18e+01 d.189.1.1 91020 2basA 431 4.18e+01 1j1qA 261 4.23e+01 d.165.1.1 90768 2bkkA 264 4.46e+01 1fp0A 88 4.48e+01 1fp0A g.50.1.2 45361 1uhkA 191 4.53e+01 1vfjA 116 4.69e+01 1f1eA 154 4.72e+01 a.22.1.2 64927 1wmuB 146 4.87e+01 a.1.1.2 109417 1oqcA 125 4.89e+01 a.24.15.1 87264 1qhlA 227 4.90e+01 1qhlA c.37.1.12 32382 1kjvB 100 4.97e+01 b.1.1.2 77423 1b3uA 588 5.08e+01 1b3uA a.118.1.2 19135 2d28C 149 5.08e+01 1q77A 138 5.14e+01 c.26.2.4 96023 1j8rA 196 5.18e+01 1j8rA b.2.3.3 62745 1knvA 293 5.24e+01 c.52.1.7 68707 2bmaA 470 5.42e+01 1xd7A 145 5.48e+01 a.4.5.55 109566 2bidA 197 5.63e+01 2bidA f.1.4.1 43398 1v0jA 399 5.65e+01 2c3mA 1231 5.67e+01 1rocA 155 5.68e+01 b.1.22.1 97673 1yukB 120 5.75e+01 2hrvA 142 5.76e+01 2hrvA b.47.1.4 26429 1yfuA 174 5.80e+01 1dfuP 94 5.89e+01 1dfuP b.53.1.1 26936 2pii 112 5.91e+01 2pii d.58.5.1 39071 1ws0A 156 5.91e+01 1unlD 208 5.93e+01 1e8rA 50 5.98e+01 1e8rA g.29.1.1 44960 1or7A 194 6.09e+01 a.4.13.2,a.177.1.1 87332,87333 2b2yA 187 6.12e+01 1gx1A 160 6.15e+01 d.79.5.1 70675 1yua 122 6.26e+01 1yua g.41.3.3,g.41.3.3 45210,45211 1gakA 141 6.32e+01 1gakA a.19.1.1 16415 1tn6A 382 6.37e+01 1u8vA 490 6.48e+01 1h6kA 757 6.61e+01 a.118.1.14,a.118.1.14,a.118.1.14 60675,60676,60677 1sc3A 178 6.64e+01 c.17.1.1 105416 1oyzA 280 6.66e+01 a.118.1.16 93775 1ay7B 89 6.79e+01 1ay7B c.9.1.1 30836 1wdjA 187 7.03e+01 2fe5A 94 7.21e+01 1qzzA 374 7.53e+01 a.4.5.29,c.66.1.12 96719,96720 1irdB 146 7.55e+01 a.1.1.2 66287 1vqoZ 83 7.66e+01 2fbqA 235 7.68e+01 1a99A 344 7.70e+01 1pot c.94.1.1 35812 1vmfA 145 7.71e+01 1lvfA 110 7.94e+01 a.47.2.1 74280 1uwfA 158 7.95e+01 1avwB 171 7.99e+01 1wba b.42.4.1 25599 1bed 181 8.04e+01 1fvkA c.47.1.13 90330 1llmC 88 8.18e+01 g.37.1.1,g.37.1.1 91059,91060 1t3wA 148 8.20e+01 1u5tA 233 8.21e+01 a.4.5.54,a.4.5.54 107684,107685 1gcvB 136 8.32e+01 1cg5B a.1.1.2 15589 1oj4A 283 8.35e+01 d.14.1.5,d.58.26.5 93083,93084 1z0xA 220 8.46e+01 1wj5A 120 8.51e+01 1xreA 217 8.77e+01 1zhxA 438 8.83e+01 1iuqA 367 8.86e+01 c.112.1.1 90703