# List of top-scoring protein chains for t04-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1wdjA 187 3.02e-01 1vphA 149 1.67e+00 1x1fA 149 2.46e+00 1m4zA 238 2.77e+00 b.34.12.1 78630 1v87A 114 3.92e+00 g.44.1.1 108422 2f4mA 295 4.00e+00 1adoA 363 4.42e+00 1fbaA c.1.10.1 29124 1yk4A 52 4.58e+00 1zaiA 363 4.58e+00 1rlyA 60 5.92e+00 g.41.3.1 104988 1yhvA 297 5.94e+00 2axwA 134 6.78e+00 1dl6A 58 6.98e+00 1dl6A g.41.3.1 45207 2av5A 120 8.38e+00 1uz3A 102 8.45e+00 1qzzA 374 8.49e+00 a.4.5.29,c.66.1.12 96719,96720 1u5kA 244 8.99e+00 1a8q 274 9.02e+00 1brt c.69.1.12 34702 1yua 122 9.30e+00 1yua g.41.3.3,g.41.3.3 45210,45211 1dkqA 410 9.51e+00 1dklA c.60.1.2 33998 1weoA 93 9.87e+00 1x1rA 178 1.07e+01 1yz4A 160 1.08e+01 1utuA 108 1.08e+01 1oyzA 280 1.10e+01 a.118.1.16 93775 2gsaA 432 1.12e+01 2gsaA c.67.1.4 34446 1f3mC 297 1.15e+01 1hcl d.144.1.7 41677 3pvaA 335 1.17e+01 3pvaA d.153.1.3 41854 1dkmA 410 1.18e+01 1dklA c.60.1.2 34000 1vmfA 145 1.18e+01 1mk4A 157 1.23e+01 d.108.1.1 84979 1ef8A 261 1.30e+01 1ef8A c.14.1.3 30921 1u7eB 154 1.30e+01 1mb4A 370 1.37e+01 c.2.1.3,d.81.1.1 78908,78909 1zip 217 1.37e+01 1zin c.37.1.1,g.41.2.1 31916,45179 1zin 217 1.39e+01 1zin c.37.1.1,g.41.2.1 31915,45178 1vp6A 138 1.41e+01 1gz6A 319 1.47e+01 c.2.1.2 76410 1uu1A 335 1.50e+01 c.67.1.1 99993 1vq0A 302 1.64e+01 1cjwA 166 1.81e+01 1cjwA d.108.1.1 40818 2fztA 79 1.83e+01 2pvaA 345 1.84e+01 3pvaA d.153.1.3 41850 1q0sA 259 1.89e+01 c.66.1.28 95509 2bkkA 264 1.90e+01 1iro 54 1.92e+01 1rb9 g.41.5.1 45223 2cc0A 195 1.95e+01 1yf3A 259 1.95e+01 1u6tA 121 1.96e+01 1gsa 316 1.99e+01 1gsa c.30.1.3,d.142.1.1 31718,41477 1bq9A 54 2.02e+01 1rb9 g.41.5.1 45238 1brfA 53 2.06e+01 1rb9 g.41.5.1 45236 4fgf 146 2.10e+01 1bfg b.42.1.1 25486 1w4xA 542 2.14e+01 c.3.1.5,c.3.1.5 109171,109172 1ub4A 110 2.16e+01 b.34.6.2 88399 2awiA 317 2.16e+01 1nh1A 330 2.18e+01 e.45.1.1 91871 2aa1B 146 2.20e+01 1h7nA 342 2.21e+01 1b4kA c.1.10.3 60726 2ccyA 128 2.25e+01 2ccyA a.24.3.2 16544 1rb9 53 2.26e+01 1rb9 g.41.5.1 45214 1kzfA 230 2.26e+01 d.108.1.3 73354 2evrA 246 2.26e+01 1ohlA 342 2.29e+01 c.1.10.3 87035 1vkmA 297 2.33e+01 c.138.1.1 108670 1fp1D 372 2.55e+01 1fpqA a.4.5.29,c.66.1.12 59939,59940 1ut9A 609 2.57e+01 a.102.1.2,b.1.18.2 99912,99913 1j7xA 302 2.59e+01 c.14.1.2 66425 1sviA 195 2.61e+01 c.37.1.8 106048 2a8eA 220 2.64e+01 1rdg 53 2.78e+01 1rb9 g.41.5.1 45221 2f6lA 166 2.79e+01 1q7lB 88 2.79e+01 2fp1A 166 2.80e+01 1y8qA 346 2.81e+01 2cybA 323 2.82e+01 2g42A 79 2.85e+01 1ytlA 174 2.95e+01 1j4nA 271 2.97e+01 f.19.1.1 71510 2afgA 140 3.03e+01 1bfg b.42.1.1 25514 1bea 127 3.07e+01 1bea a.52.1.2 17826 1dfuP 94 3.15e+01 1dfuP b.53.1.1 26936 1aszB 490 3.18e+01 1b8aA b.40.4.1,d.104.1.1 25241,40762 1g2fC 90 3.31e+01 k.12.1.1 60222 1txnA 328 3.34e+01 1nm2A 317 3.41e+01 c.19.1.1,d.58.23.1 80654,80655 1ebfA 358 3.58e+01 1ebuA c.2.1.3,d.81.1.2 30033,39948 1woyA 500 3.58e+01 1zdzA 302 3.67e+01 1bfg 146 3.67e+01 1bfg b.42.1.1 25485 1zaaC 87 3.70e+01 1aayA g.37.1.1,g.37.1.1,g.37.1.1 45013,45014,45015 1gp6A 356 3.71e+01 b.82.2.1 65441 1mla 309 3.73e+01 1mla c.19.1.1,d.58.23.1 31031,39383 1aayA 90 3.74e+01 1aayA g.37.1.1,g.37.1.1,g.37.1.1 45001,45002,45003 1a1iA 90 3.78e+01 1aayA g.37.1.1,g.37.1.1,g.37.1.1 44998,44999,45000 1v5wA 343 3.80e+01 c.37.1.11 108387 1nthA 458 3.83e+01 c.1.25.1 80730 1flcB 175 3.89e+01 1flcB h.3.1.1 45716 1oqcA 125 3.90e+01 a.24.15.1 87264 1vzlA 34 3.93e+01 1g4yB 101 4.02e+01 1g4yB f.15.1.1 60251 1brt 277 4.07e+01 1brt c.69.1.12 34699 1ykhA 108 4.09e+01 1rdqE 350 4.16e+01 d.144.1.7 97314 1wolA 122 4.24e+01 1hkhA 279 4.25e+01 c.69.1.12 90628 2az0A 73 4.25e+01 1vmjA 151 4.45e+01 1zbqA 327 4.53e+01 1srvA 145 4.56e+01 1derA c.8.5.1 30817 1se0A 116 4.59e+01 g.52.1.1 98814 1a8h 500 4.63e+01 1a8h a.27.1.1,c.26.1.1 16922,31589 1v54F 98 4.67e+01 g.41.5.3 100327 1zbmA 280 4.69e+01 1ryt 190 4.70e+01 1ryt a.25.1.1,g.41.5.1 16646,45245 1rg8A 146 4.72e+01 1p63A 144 4.73e+01 b.42.1.1 94153 1p4xA 250 4.75e+01 a.4.5.28,a.4.5.28 87784,87785 1dq3A 454 4.89e+01 1dq3A b.86.1.2,d.50.3.1,d.95.2.2,d.95.2.2 28380,38798,40585,40586 1broA 277 5.03e+01 1brt c.69.1.12 34700 1t0aA 159 5.03e+01 1lucA 355 5.05e+01 1lucA c.1.16.1 29547 1n9dA 199 5.09e+01 a.26.1.1 85464 1i0aA 466 5.18e+01 1auwA a.127.1.1 61479 1dv1A 449 5.19e+01 1bncA b.84.2.1,c.30.1.1,d.142.1.2 28234,31641,41486 2genA 197 5.20e+01 1v6zA 228 5.23e+01 2f6mB 109 5.31e+01 1j1uA 306 5.33e+01 c.26.1.1 83980 1vqqA 646 5.36e+01 1ro0A 216 5.37e+01 d.264.1.2 97664 1nu0A 138 5.39e+01 c.55.3.8 92165 1fp0A 88 5.42e+01 1fp0A g.50.1.2 45361 1mxmA 254 5.45e+01 b.38.1.3,d.58.43.1,f.34.1.1 79647,79648,79649 1b7yB 785 5.50e+01 1pysB a.6.1.1,a.6.1.1,b.40.4.4,d.58.13.1,d.104.1.1,d.138.1.1 16301,16302,25312,39311,40780,41456 2occF 98 5.52e+01 2occF g.41.5.3 45256 1w3oA 216 5.54e+01 1jigA 146 5.56e+01 a.25.1.1 71685 2b0jA 358 5.60e+01 1kbhA 47 5.77e+01 a.153.1.1 68382 1lkoA 191 5.79e+01 a.25.1.1,g.41.5.1 78063,78064 1cxzB 86 5.92e+01 1cxzB a.2.6.1 15705 1qo3C 137 5.96e+01 1qo3C d.169.1.1 42350 1gmuA 143 5.97e+01 b.107.1.1,d.58.38.1 65335,65336 1otkA 249 6.08e+01 a.25.1.2 93521 1ls6A 295 6.14e+01 c.37.1.5 91115 2gdm 153 6.17e+01 2gdm a.1.1.2 15212 2czcA 334 6.19e+01 2c2hA 192 6.23e+01 1epxA 370 6.25e+01 1fbaA c.1.10.1 29150 1b71A 191 6.28e+01 1ryt a.25.1.1,g.41.5.1 16647,45246 1m0wA 491 6.37e+01 c.30.1.4,d.142.1.6 78363,78364 1lv7A 257 6.38e+01 c.37.1.20 78232 1apmE 350 6.43e+01 1cdkA d.144.1.7 41628 1r13A 148 6.50e+01 d.169.1.1,h.1.1.1 96782,96783 1ufbA 127 6.56e+01 a.24.16.3 99331 1wgxA 73 6.58e+01 1w33A 181 6.64e+01 1tqjA 230 6.65e+01 c.1.2.2 107228 1wmmA 145 6.66e+01 2fe5A 94 6.71e+01 1xreA 217 6.71e+01 1ujmA 342 6.77e+01 1jr8A 117 6.78e+01 a.24.15.1 67115 1o7nA 449 6.79e+01 b.33.1.2,d.129.3.3 81162,81163 1eaxA 241 6.81e+01 b.47.1.2 64889 1ykhB 132 6.84e+01 1iwmA 186 6.86e+01 b.125.1.2 83758 2cokA 113 6.89e+01 1cznA 169 6.91e+01 1rcf c.23.5.1 31181 1v52A 133 6.95e+01 1eg9A 449 6.95e+01 1ndoA b.33.1.2,d.129.3.3 24443,41322 1aa6 715 7.04e+01 2napA b.52.2.2,c.81.1.1 26916,35324 1y1pA 342 7.14e+01 1ro2A 216 7.20e+01 d.264.1.2 97665 2es9A 115 7.31e+01 1o97D 320 7.33e+01 c.26.2.3,c.31.1.2 81233,81234 1ltqA 301 7.35e+01 c.108.1.9,c.37.1.1 78208,78209 1jyoE 105 7.35e+01 d.184.1.2 67487 1i60A 278 7.38e+01 c.1.15.4 71118 1tv9A 335 7.40e+01 1wwtA 88 7.43e+01 1t7vA 278 7.44e+01 1hl9A 449 7.58e+01 b.71.1.3,c.1.8.11 90650,90651 1t77A 414 7.59e+01 1nal1 297 7.60e+01 1nal3 1rw1A 114 7.65e+01 1dvpA 220 7.75e+01 1dvpA a.118.9.2,g.50.1.1 19216,45358 2az2A 73 7.78e+01 2cw8A 537 7.83e+01 1mgpA 313 7.98e+01 c.119.1.1 79098 2ex3B 264 7.98e+01 1w44A 331 8.05e+01 1ix9A 205 8.16e+01 a.2.11.1,d.44.1.1 76899,76900 1z0sA 278 8.27e+01 1aua 296 8.29e+01 1aua a.5.3.1,c.13.1.1 16290,30882 1i0hA 205 8.42e+01 1avmA a.2.11.1,d.44.1.1 15760,38685 2g7jA 124 8.45e+01 1nh2B 53 8.48e+01 a.32.1.1 91874 1wpuA 147 8.52e+01 1rqbA 539 8.62e+01 a.5.7.2,c.1.10.5 105057,105058 1j7lA 264 8.62e+01 d.144.1.6 62697 1sv0C 82 8.71e+01 a.60.1.1 106037 2djkA 133 8.73e+01 1xpjA 126 8.76e+01 1wmqA 147 8.78e+01 1ne6A 283 8.92e+01 b.82.3.2,b.82.3.2 91831,91832 1x13A 401 8.93e+01 1nq6A 302 8.96e+01 c.1.8.3 92046