# List of top-scoring protein chains for t04-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1weoA 93 1.60e+00 1rlyA 60 2.41e+00 g.41.3.1 104988 1eswA 500 2.48e+00 1cwyA c.1.8.1 59500 1kxu 333 2.84e+00 1jkw a.74.1.1,a.74.1.1 18358,18359 1dl6A 58 2.98e+00 1dl6A g.41.3.1 45207 1v87A 114 4.92e+00 g.44.1.1 108422 1yk4A 52 6.68e+00 2f4mA 295 7.21e+00 1bpyA 335 8.64e+00 1bpyA a.60.6.1,a.60.12.1,d.218.1.2 17980,75819,75820 2fmpA 335 8.77e+00 1rb9 53 9.08e+00 1rb9 g.41.5.1 45214 1msc 129 9.29e+00 1msc d.85.1.1 40039 1rdg 53 1.10e+01 1rb9 g.41.5.1 45221 1z1zA 131 1.18e+01 1mqsA 671 1.19e+01 e.25.1.1 79414 2axwA 134 1.21e+01 1w9yA 319 1.26e+01 1iro 54 1.30e+01 1rb9 g.41.5.1 45223 1rw1A 114 1.31e+01 1zip 217 1.38e+01 1zin c.37.1.1,g.41.2.1 31916,45179 1zin 217 1.42e+01 1zin c.37.1.1,g.41.2.1 31915,45178 1gnkA 112 1.47e+01 2pii d.58.5.1 39073 1tv9A 335 1.49e+01 2carA 196 1.53e+01 1f7dA 136 1.58e+01 1dun b.85.4.1 28353 1jigA 146 1.61e+01 a.25.1.1 71685 1gjwA 637 1.67e+01 b.71.1.1,c.1.8.1 60582,60583 1or7A 194 1.73e+01 a.4.13.2,a.177.1.1 87332,87333 1wy6A 172 1.98e+01 4bcl 366 2.07e+01 4bcl b.75.1.1 27968 1v2bA 177 2.08e+01 d.107.1.2 108279 2bmaA 470 2.09e+01 1lvaA 258 2.14e+01 a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35 74276,74277,74278,74279 2d28C 149 2.42e+01 1oj4A 283 2.44e+01 d.14.1.5,d.58.26.5 93083,93084 1bq9A 54 2.46e+01 1rb9 g.41.5.1 45238 1w33A 181 2.46e+01 1i50L 70 2.53e+01 g.41.9.2 61766 1qs1A 462 2.54e+01 1qs1A d.166.1.1,d.166.1.1 42260,42261 1zq4A 693 2.56e+01 2a8eA 220 2.59e+01 1j7nA 776 2.63e+01 d.92.1.14,d.92.1.14,d.166.1.1 66409,66410,66411 2aa1B 146 2.65e+01 2cobA 70 2.68e+01 1gakA 141 2.74e+01 1gakA a.19.1.1 16415 1twfL 70 2.78e+01 1brfA 53 2.84e+01 1rb9 g.41.5.1 45236 1yukB 120 2.84e+01 1vq0A 302 3.04e+01 1vb5A 276 3.11e+01 1zu4A 320 3.19e+01 1qhlA 227 3.22e+01 1qhlA c.37.1.12 32382 1wgeA 83 3.25e+01 1k5nB 100 3.33e+01 b.1.1.2 77268 1f0lA 535 3.39e+01 1ddt b.2.1.1,d.166.1.1,f.1.2.1 22377,42239,43382 1i4fB 100 3.50e+01 1agdB b.1.1.2 61689 1gtvA 214 3.57e+01 c.37.1.1 70537 1y1pA 342 3.60e+01 1yfuA 174 3.74e+01 1v0jA 399 3.76e+01 1b7yB 785 3.80e+01 1pysB a.6.1.1,a.6.1.1,b.40.4.4,d.58.13.1,d.104.1.1,d.138.1.1 16301,16302,25312,39311,40780,41456 2d27A 149 3.88e+01 1xg9A 260 4.03e+01 1zghA 260 4.03e+01 1jgsA 138 4.04e+01 a.4.5.28 66683 1jr8A 117 4.04e+01 a.24.15.1 67115 1ujmA 342 4.12e+01 1d8dA 377 4.12e+01 1ft1A a.118.6.1 19185 1uhkA 191 4.14e+01 1v54F 98 4.17e+01 g.41.5.3 100327 1iwmA 186 4.20e+01 b.125.1.2 83758 1fp0A 88 4.23e+01 1fp0A g.50.1.2 45361 2gdm 153 4.31e+01 2gdm a.1.1.2 15212 1w8kA 447 4.32e+01 1j8yF 297 4.47e+01 1ng1 a.24.13.1,c.37.1.10 62747,62748 1dvpA 220 4.52e+01 1dvpA a.118.9.2,g.50.1.1 19216,45358 2occF 98 4.58e+01 2occF g.41.5.3 45256 1txqB 86 4.60e+01 1m65A 245 4.64e+01 c.6.3.1 84847 2ffsA 157 4.67e+01 1j8mF 297 4.70e+01 1ng1 a.24.13.1,c.37.1.10 62742,62743 1reqA 727 4.73e+01 1reqA c.1.19.1,c.23.6.1 29620,31247 1rdr 461 4.75e+01 1rdr e.8.1.4 43116 1a1iA 90 4.83e+01 1aayA g.37.1.1,g.37.1.1,g.37.1.1 44998,44999,45000 1theA 260 4.90e+01 1theB d.3.1.1 37056 1b3uA 588 4.96e+01 1b3uA a.118.1.2 19135 2akaB 299 4.96e+01 5reqA 727 4.97e+01 1reqA c.1.19.1,c.23.6.1 29632,31259 1yua 122 5.03e+01 1yua g.41.3.3,g.41.3.3 45210,45211 1h2vC 771 5.05e+01 a.118.1.14,a.118.1.14,a.118.1.14 76592,76593,76594 1xnzA 264 5.11e+01 1oqcA 125 5.22e+01 a.24.15.1 87264 1pp7U 131 5.22e+01 a.4.5.44 94973 1ouoA 210 5.38e+01 d.4.1.6 93554 1tn6A 382 5.38e+01 1unlD 208 5.41e+01 1tqzA 133 5.48e+01 1ve2A 235 5.50e+01 1aayA 90 5.50e+01 1aayA g.37.1.1,g.37.1.1,g.37.1.1 45001,45002,45003 1t77A 414 5.51e+01 1c02A 166 5.52e+01 1qspA a.24.10.2 16633 1e8rA 50 5.64e+01 1e8rA g.29.1.1 44960 2ap1A 327 5.67e+01 1ws0A 156 5.67e+01 1neeA 138 5.82e+01 d.241.1.1,g.59.1.1 91841,91842 2a14A 263 5.94e+01 1sltA 134 5.98e+01 1c1lA b.29.1.3 24186 1gmyA 261 6.02e+01 d.3.1.1 76236 2bidA 197 6.02e+01 2bidA f.1.4.1 43398 1fftC 204 6.14e+01 1fftC f.25.1.1 43629 1vfjA 116 6.22e+01 1xtoA 311 6.23e+01 1vj7A 393 6.25e+01 a.211.1.1,d.218.1.8 100801,100802 2f6lA 166 6.29e+01 1c24A 263 6.31e+01 1c24A d.127.1.1 41148 1tig 94 6.40e+01 1tig d.68.1.1 39566 1vmfA 145 6.41e+01 1v3rA 116 6.45e+01 1ld8A 382 6.45e+01 a.118.6.1 73838 1e7aA 585 6.46e+01 1bj5 a.126.1.1,a.126.1.1,a.126.1.1 19360,19361,19362 1j8rA 196 6.48e+01 1j8rA b.2.3.3 62745 2cvjA 180 6.51e+01 1t3wA 148 6.63e+01 1uyjA 296 6.65e+01 f.8.1.2 108143 2pii 112 6.90e+01 2pii d.58.5.1 39071 2fp1A 166 6.96e+01 1ojqA 212 6.99e+01 d.166.1.1 93146 1s72Z 73 7.03e+01 g.41.8.1 105345 1ji0A 240 7.31e+01 c.37.1.12 71665 1mpgA 282 7.34e+01 1mpgA a.96.1.3,d.129.1.2 18747,41296 1vp6A 138 7.35e+01 1n0nA 199 7.45e+01 a.2.11.1,d.44.1.1 79750,79751 1jk0B 345 7.45e+01 a.25.1.2 63143 1ma3A 253 7.52e+01 c.31.1.5 78883 1jj2Y 73 7.66e+01 1ffkW g.41.8.1 63110 1zaaC 87 7.82e+01 1aayA g.37.1.1,g.37.1.1,g.37.1.1 45013,45014,45015 1uz5A 402 7.89e+01 b.85.6.1,b.103.1.1,c.57.1.2 100217,100218,100219 2pvaA 345 8.02e+01 3pvaA d.153.1.3 41850 1ap6A 198 8.05e+01 1avmA a.2.11.1,d.44.1.1 15746,38705 1vqoZ 83 8.11e+01 1dfuP 94 8.28e+01 1dfuP b.53.1.1 26936 1h6kA 757 8.28e+01 a.118.1.14,a.118.1.14,a.118.1.14 60675,60676,60677 1xreA 217 8.40e+01 1f6fA 199 8.69e+01 1f6fA a.26.1.1 16839 1rocA 155 8.71e+01 b.1.22.1 97673 1sqkB 25 8.79e+01 j.86.1.1 105924 1d8wA 426 8.86e+01 1de5A c.1.15.2 29394 1gg3A 279 8.88e+01 1ef1A a.11.2.1,b.55.1.5,d.15.1.4 16372,27007,37615