# List of top-scoring protein chains for T0318.t2k-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1gytA 503 5.29e-47 c.50.1.1,c.56.5.3 70765,70766 1bllE 488 5.34e-42 1lam c.50.1.1,c.56.5.3 33170,33833 2ewbA 486 5.37e-42 1lam 484 5.37e-42 1lam c.50.1.1,c.56.5.3 33166,33829 1v71A 323 9.12e-01 1t4mA 181 4.65e+00 1t2nA 181 5.39e+00 1ispA 181 5.49e+00 c.69.1.18 76778 1eyvA 156 7.82e+00 1eyvA a.79.1.1 18446 1dxy 333 9.60e+00 1dxy c.2.1.4,c.23.12.1 30094,31354 1gpqA 135 1.01e+01 d.233.1.1 83295 1vb7A 94 1.15e+01 b.36.1.1 108474 2cg9A 677 1.19e+01 1ebdA 455 1.45e+01 1lvl c.3.1.5,c.3.1.5,d.87.1.1 30577,30578,40210 1x13A 401 1.49e+01 1xs0A 136 1.73e+01 1jqoA 970 1.89e+01 c.1.12.3 77160 1orhA 353 2.45e+01 c.66.1.6 93455 1feuA 206 2.46e+01 1feuA b.53.1.1 59801 1jgiA 628 2.48e+01 b.71.1.1,c.1.8.1 66676,66677 1mvyA 628 2.49e+01 b.71.1.1,c.1.8.1 79547,79548 1tz9A 367 2.87e+01 c.1.15.6 107466 1r5iD 216 2.92e+01 a.202.1.1 97091 2frnA 278 3.08e+01 1z2iA 358 3.22e+01 2a1uB 255 3.25e+01 1bba 36 3.25e+01 1bba j.6.1.1 46088 1wlsA 328 3.34e+01 1efvB 255 3.37e+01 1efvB c.26.2.3 31634 1ljvA 37 3.41e+01 j.6.1.1 78056 1kxrA 339 3.42e+01 d.3.1.3 73175 1usvA 260 3.54e+01 d.14.1.8 99887 1v76A 96 3.55e+01 1oriA 343 3.63e+01 c.66.1.6 87339 1or8A 340 3.67e+01 c.66.1.6 93451 1g4mA 393 3.69e+01 b.1.18.11,b.1.18.11 65143,65144 1jxmA 301 3.70e+01 b.34.2.1,c.37.1.1 67420,67421 1ogsA 497 3.77e+01 b.71.1.2,c.1.8.3 86997,86998 1hk7A 288 3.83e+01 d.14.1.8 90626 2c0nA 203 3.84e+01 2b64Y 354 3.91e+01 1vl0A 292 3.96e+01 c.2.1.2 108704 1jsyA 418 3.98e+01 b.1.18.11,b.1.18.11 71847,71848 1kjwA 295 4.05e+01 b.34.2.1,c.37.1.1 68643,68644 2cgeA 405 4.06e+01 1g5aA 628 4.06e+01 b.71.1.1,c.1.8.1 65152,65153 1hqz1 141 4.10e+01 1wmkA 321 4.19e+01 1w3bA 388 4.30e+01 a.118.8.1 109149 1tl9A 339 4.32e+01 1uic 129 4.50e+01 3lzt d.2.1.2 36356 1usuA 260 4.65e+01 d.14.1.8 99885 1yqeA 282 4.84e+01 1wmjA 130 4.92e+01 2gi3A 476 5.04e+01 2cxaA 256 5.13e+01 1kxx 129 5.18e+01 3lzt d.2.1.2 36319 1sjiA 350 5.30e+01 1vdzA 588 5.32e+01 1ky3A 182 5.57e+01 c.37.1.8 73193 1g61A 228 5.76e+01 1g61A d.126.1.1 41126 1dkkA 129 5.89e+01 3lzt d.2.1.2 36404 1wdyA 285 6.18e+01 1kb0A 677 6.29e+01 a.3.1.6,b.70.1.1 68378,68379 1fhwA 129 6.32e+01 1faoA b.55.1.1 26977 1tufA 434 6.61e+01 b.49.2.3,c.1.6.1 107335,107336 1twiA 434 6.61e+01 b.49.2.3,c.1.6.1 107399,107400 1zcmA 321 6.65e+01 1hep 129 6.77e+01 3lzt d.2.1.2 36327 1vk3A 615 6.88e+01 d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1 100846,100847,100848,100849 1kxy 129 6.89e+01 3lzt d.2.1.2 36324 2es7A 142 6.99e+01 2f1vA 197 7.07e+01 2esvE 240 7.18e+01 8pchA 220 7.18e+01 1cs8A 1kxw 129 7.20e+01 3lzt d.2.1.2 36355 1heq 129 7.24e+01 3lzt d.2.1.2 36316 1a2yC 129 7.25e+01 3lzt d.2.1.2 36305 1fbiX 129 7.28e+01 3lzt d.2.1.2 36399 1hhl 129 7.34e+01 3lzt d.2.1.2 36398 1ky9A 448 7.38e+01 b.36.1.4,b.47.1.1 73198,73199 2aryA 351 7.41e+01 1u2bA 138 7.47e+01 1fgyA 127 7.47e+01 1faoA b.55.1.1 26976 1her 129 7.59e+01 3lzt d.2.1.2 36340 1flwA 129 7.88e+01 3lzt d.2.1.2 36322 1v0bA 288 7.88e+01 d.144.1.7 100241 1r85A 379 7.92e+01 c.1.8.3 104839 1fluA 129 8.29e+01 3lzt d.2.1.2 36321 1jeyB 565 8.34e+01 1jeqB b.131.1.2,c.62.1.4 90372,90373 2iffY 129 8.45e+01 3lzt d.2.1.2 36383 1vpyA 289 8.51e+01 1m4vA 204 8.58e+01 b.40.2.2,d.15.6.1 74459,74460 1ir7A 129 8.62e+01 d.2.1.2 66283 2bnxA 386 8.67e+01 1hen 129 8.72e+01 3lzt d.2.1.2 36326 1x31A 964 8.73e+01 1ufoA 238 8.81e+01 c.69.1.27 99344 1jhlA 129 8.83e+01 3lzt d.2.1.2 36403