# List of top-scoring protein chains for t06-100-30-stride-ebghtl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1lam 484 2.86e-76 1lam c.50.1.1,c.56.5.3 33166,33829 1uz5A 402 1.12e-01 b.85.6.1,b.103.1.1,c.57.1.2 100217,100218,100219 1vkwA 218 2.46e-01 d.90.1.2 108695 1tkjA 284 4.39e-01 1qq9A 284 5.59e-01 1xjo c.56.5.4 33841 1lrzA 426 7.62e-01 a.2.7.4,d.108.1.4,d.108.1.4 78167,78168,78169 1yqeA 282 8.37e-01 1x13A 401 1.12e+00 1zq6A 359 1.30e+00 1yh1A 359 1.36e+00 1oxwA 373 1.66e+00 c.19.1.3 87539 1pt6A 213 2.31e+00 c.62.1.1 95091 2b0aA 186 2.78e+00 2d69A 430 2.92e+00 1h1yA 228 3.11e+00 c.1.2.2 76506 1pvvA 315 3.15e+00 c.78.1.1,c.78.1.1 95190,95191 2cwxA 430 3.47e+00 1wmsA 177 3.74e+00 c.37.1.8 109414 1iloA 77 4.06e+00 c.47.1.1 66205 2fh5A 185 4.28e+00 1ulyA 192 4.98e+00 1cg2A 393 5.00e+00 1cg2A c.56.5.4,d.58.19.1 33844,39360 2etvA 346 5.45e+00 1ywnA 316 5.49e+00 2ck3A 510 6.12e+00 2fjbA 643 6.14e+00 1jnrA 643 6.25e+00 a.7.3.1,c.3.1.4,d.168.1.1 66966,66967,66968 1yd9A 193 6.92e+00 1mp8A 281 6.94e+00 d.144.1.7 91384 1tqjA 230 7.16e+00 c.1.2.2 107228 1rtqA 299 7.80e+00 c.56.5.4 97819 1l2tA 235 7.88e+00 c.37.1.12 73514 1g8iA 190 8.53e+00 1rec a.39.1.5 60363 1spvA 184 8.66e+00 c.50.1.2 98957 1kmqA 184 8.92e+00 c.37.1.8 84412 1ua4A 455 8.95e+00 c.72.1.3 99128 1rifA 282 9.14e+00 c.37.1.23 97507 1g291 372 9.25e+00 1g291 1zjcA 418 9.27e+00 1nm2A 317 9.34e+00 c.19.1.1,d.58.23.1 80654,80655 2fliA 220 1.04e+01 1h8eA 510 1.06e+01 1skyB a.69.1.1,b.49.1.1,c.37.1.11 60738,60739,60740 1dpgA 485 1.06e+01 1dpgA c.2.1.3,d.81.1.5 30074,39989 1v7pC 200 1.09e+01 c.62.1.1 108408 1f46A 140 1.16e+01 1f46A d.129.4.1 59643 1o4tA 133 1.19e+01 b.82.1.9 86622 2cybA 323 1.20e+01 1uxjA 309 1.22e+01 c.2.1.5,d.162.1.1 108112,108113 1wcgA 464 1.28e+01 1x6mA 196 1.38e+01 2fsqA 243 1.38e+01 1b6g 310 1.39e+01 1b6g c.69.1.8 34661 1yz4A 160 1.40e+01 1cnv 299 1.46e+01 1cnv c.1.8.5 28989 1atzA 189 1.55e+01 1atzA c.62.1.1 34132 1ykdA 398 1.57e+01 1bob 320 1.59e+01 1bob d.108.1.1 40816 1bh9B 89 1.69e+01 1bh9B a.22.1.3 16485 1je0A 236 1.71e+01 c.56.2.1 66581 1em8B 112 1.74e+01 c.126.1.1 90458 1xd8A 289 1.78e+01 1r7mA 235 1.79e+01 1gk8A 475 1.81e+01 c.1.14.1,d.58.9.1 65234,65235 2eryA 172 1.90e+01 1xg2B 153 1.92e+01 2ge3A 170 1.96e+01 2bbhA 269 1.97e+01 2bjvA 265 1.98e+01 2ashA 381 2.05e+01 1nf3A 195 2.06e+01 c.37.1.8 85594 1o17A 345 2.07e+01 a.46.2.1,c.27.1.1 80765,80766 1ky3A 182 2.10e+01 c.37.1.8 73193 1sznA 417 2.18e+01 b.71.1.1,c.1.8.1 106162,106163 1zosA 230 2.28e+01 1fvpA 231 2.34e+01 1nfp c.1.16.2 29556 1pvtA 238 2.47e+01 c.74.1.1 95189 1l5wA 796 2.52e+01 c.87.1.4 73605 1s98A 107 2.56e+01 b.124.1.1 105377 1f4pA 147 2.58e+01 5nul c.23.5.1 59651 1g8pA 350 2.65e+01 1g8pA c.37.1.20 60376 1hs6A 611 2.66e+01 1hs6A a.118.1.7,b.98.1.1,d.92.1.13 61233,61234,61235 1w07A 659 2.69e+01 2etsA 128 2.73e+01 1xnzA 264 2.75e+01 1fgkA 310 2.77e+01 1fgkA d.144.1.7 41693 1xklA 273 2.78e+01 1fqtA 112 2.79e+01 1fqtA b.33.1.1 24441 1ihgA 370 2.80e+01 2cpl a.118.8.1,b.62.1.1 62380,62381 1pn0A 665 2.85e+01 c.3.1.2,c.47.1.10,d.16.1.2 94918,94919,94920 1v8yA 170 2.86e+01 1vheA 373 2.88e+01 b.49.3.1,c.56.5.4 100669,100670 1j1bA 420 2.90e+01 d.144.1.7 90758 1ijbA 202 2.91e+01 c.62.1.1 71229 1za0A 275 2.99e+01 1cuk 203 3.02e+01 1hjp a.5.1.1,a.60.2.1,b.40.4.2 16273,17946,25265 1wy1A 172 3.04e+01 1t9hA 307 3.07e+01 1eswA 500 3.08e+01 1cwyA c.1.8.1 59500 1gjwA 637 3.12e+01 b.71.1.1,c.1.8.1 60582,60583 1vhuA 211 3.22e+01 c.50.1.2 100703 1t2dA 322 3.34e+01 c.2.1.5,d.162.1.1 99084,99085 1pyfA 312 3.53e+01 c.1.7.1 95334 1ysjA 404 3.68e+01 2g5cA 281 3.70e+01 1tzyD 103 3.74e+01 a.22.1.1 107533 1h5uA 842 3.78e+01 1a8i c.87.1.4 60655 1efvB 255 3.79e+01 1efvB c.26.2.3 31634 1jysA 242 3.83e+01 c.56.2.1 77216 1ppjC 379 3.83e+01 f.32.1.1,f.21.1.2 104256,104257 3daaA 277 3.91e+01 1daaA e.17.1.1 43272 1zjrA 211 3.92e+01 2dcnA 311 3.96e+01 1ps1A 337 3.96e+01 1ps1A a.128.1.4 19450 1squA 155 4.01e+01 d.252.1.1 98971 2fd5A 180 4.07e+01 1wkbA 810 4.09e+01 1ym3A 215 4.12e+01 2audA 257 4.13e+01 1t9bA 677 4.15e+01 1yzhA 214 4.20e+01 1e5dA 402 4.21e+01 1e5dA c.23.5.1,d.157.1.3 31208,42061 1jidA 128 4.24e+01 d.201.1.1 66735 1f3vA 179 4.34e+01 1f3vA d.58.22.1 39382 2d1eA 248 4.36e+01 1el5A 389 4.42e+01 1b3mA c.3.1.2,d.16.1.3 30369,37937 2ac3A 316 4.49e+01 1yqgA 263 4.53e+01 2gr8A 99 4.64e+01 1cvrA 435 4.67e+01 1cvrA b.1.18.12,c.17.1.2 21949,31006 1o4vA 183 4.71e+01 c.23.8.1 86628 1t7vA 278 4.74e+01 2c46A 241 4.79e+01 1umnA 165 4.86e+01 a.25.1.1 99607 3prn 289 4.86e+01 3prn f.4.3.1 43761 1e5mA 416 4.87e+01 1dd8A c.95.1.1,c.95.1.1 58973,58974 1h05A 146 4.88e+01 c.23.13.1 76433 1evlA 401 4.91e+01 1qf6A c.51.1.1,d.104.1.1 33202,40751 1cjcA 460 4.95e+01 1cjcA c.3.1.1,c.4.1.1 30319,30604 1omrA 201 5.00e+01 a.39.1.5 93349 1pjcA 361 5.00e+01 1sayA c.2.1.4,c.23.12.2 30101,31361 1pieA 419 5.01e+01 d.14.1.5,d.58.26.7 94706,94707 1gc0A 398 5.03e+01 c.67.1.3 70168 1ctf 74 5.05e+01 1ctf d.45.1.1 38759 1kwfA 363 5.09e+01 a.102.1.2 73078 2a97A 439 5.09e+01 1b0uA 262 5.14e+01 1b0uA c.37.1.12 32370 1in4A 334 5.19e+01 1hqcA a.4.5.11,c.37.1.20 62597,62598 1xmpA 170 5.26e+01 2bgiA 272 5.30e+01 1x88A 359 5.35e+01 1in6A 334 5.39e+01 1hqcA a.4.5.11,c.37.1.20 62601,62602 2bo9B 222 5.47e+01 1k0wA 231 5.49e+01 c.74.1.1 77220 1txnA 328 5.53e+01 1li4A 432 5.59e+01 c.2.1.4,c.23.12.3 84616,84617 1ox0A 430 5.62e+01 c.95.1.1,c.95.1.1 87495,87496 1xmbA 418 5.63e+01 1ec7A 446 5.67e+01 1bqg c.1.11.2,d.54.1.1 29218,38862 1i4fA 275 5.68e+01 1agdA b.1.1.2,d.19.1.1 61687,61688 1sqiA 393 5.72e+01 d.32.1.3,d.32.1.3 105914,105915 2f4wA 187 5.76e+01 1m93C 41 5.81e+01 1jx4A 352 5.81e+01 d.240.1.1,e.8.1.7 90378,90379 1cipA 353 5.83e+01 1cipA a.66.1.1,c.37.1.8 18210,32093 1v1dA 31 5.85e+01 1rljA 139 5.90e+01 c.23.5.7 104983 1eljA 381 5.93e+01 4mbp c.94.1.1 35791 1tqxA 227 5.98e+01 1kw3B 292 5.98e+01 d.32.1.3,d.32.1.3 77549,77550 1ynfA 458 6.03e+01 1wzvA 155 6.07e+01 1dq3A 454 6.11e+01 1dq3A b.86.1.2,d.50.3.1,d.95.2.2,d.95.2.2 28380,38798,40585,40586 1neiA 60 6.14e+01 d.253.1.1 91843 1g0sA 209 6.26e+01 1g0sA d.113.1.1 60187 1qwoA 442 6.39e+01 c.60.1.2 104620 2f2bA 246 6.41e+01 1n1fA 159 6.47e+01 a.26.1.3 79803 2gi3A 476 6.47e+01 1fm0E 150 6.56e+01 1fmaE d.41.5.1 38629 1v8bA 479 6.58e+01 1wl8A 189 6.58e+01 1z47A 355 6.68e+01 1svsA 353 6.70e+01 c.37.1.8 106051 1ctqA 166 6.73e+01 1ctqA c.37.1.8 31965 1cp2A 269 6.79e+01 1cp2A c.37.1.10 32269 1gr0A 367 6.85e+01 c.2.1.3,d.81.1.3 70379,70380 2bikB 313 6.85e+01 1q7lA 198 6.92e+01 c.56.5.4 96044 1eexB 224 7.02e+01 1dioB c.51.3.1 33213 1qgdA 662 7.04e+01 c.36.1.6,c.36.1.10,c.48.1.1 88367,88368,88369 1nnlA 225 7.05e+01 c.108.1.4 85906 1uayA 242 7.07e+01 c.2.1.2 88390 1xppA 115 7.17e+01 1j4aA 333 7.18e+01 c.2.1.4,c.23.12.1 71502,71503 1n7kA 234 7.21e+01 c.1.10.1 85374 1d02A 202 7.32e+01 1d02A c.52.1.8 33313 2ilk 160 7.33e+01 2ilk a.26.1.3 16885 1ymiA 334 7.35e+01 1vhrA 184 7.37e+01 1vhrA c.45.1.1 32651 1s9rA 410 7.38e+01 d.126.1.4 98758 1tmy 120 7.42e+01 1dbwA c.23.1.1 31083 1ozhA 566 7.45e+01 c.31.1.3,c.36.1.5,c.36.1.9 93833,93834,93835 1vbiA 344 7.51e+01 1t46A 313 7.64e+01 d.144.1.7 106397 1ea5A 537 7.65e+01 2bce c.69.1.1 34592 1jksA 294 7.69e+01 d.144.1.7 71710 2c1iA 431 7.77e+01 1evsA 187 7.81e+01 1evsA a.26.1.1 16845 1n6zA 105 7.81e+01 d.263.1.1 85369 1l7dA 384 7.86e+01 c.2.1.4,c.23.12.2 77774,77775 1mxmA 254 7.89e+01 b.38.1.3,d.58.43.1,f.34.1.1 79647,79648,79649 2d2mC 147 7.91e+01 1yd0A 96 7.93e+01 1yi8A 351 7.95e+01 1wy5A 317 7.96e+01 1x79A 98 8.04e+01 1o3yA 166 8.11e+01 c.37.1.8 86618 1utyA 187 8.20e+01 b.147.1.1 108036 2fflA 756 8.23e+01 1zybA 232 8.25e+01 1b8oA 284 8.34e+01 1b8oA c.56.2.1 33762 1n0wA 243 8.37e+01 c.37.1.11 79772 1womA 271 8.43e+01 1svdA 473 8.44e+01 1vzyA 291 8.51e+01 2gdzA 267 8.55e+01 1kao 167 8.58e+01 1ctqA c.37.1.8 32014 1h21A 247 8.60e+01 a.138.1.3 76510 1g6sA 427 8.64e+01 1eps d.68.2.2 39584 1sxvA 172 8.71e+01 1js3A 486 8.73e+01 c.67.1.6 67215 1qyiA 384 8.75e+01 c.108.1.13 96595 1l1eA 287 8.75e+01 c.66.1.18 73454 1gk9A 260 8.82e+01 d.153.1.2 65246 2bsxA 253 8.86e+01