# List of top-scoring protein chains for t06-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1lam 484 8.88e-49 1lam c.50.1.1,c.56.5.3 33166,33829 1v71A 323 1.17e-01 1tkjA 284 2.46e-01 1qq9A 284 3.57e-01 1xjo c.56.5.4 33841 1h1yA 228 6.62e-01 c.1.2.2 76506 1suwA 249 9.10e-01 e.52.1.1 106027 1wznA 252 9.39e-01 1z0sA 278 1.19e+00 1s4nA 348 1.24e+00 c.68.1.16 98501 1tqxA 227 1.56e+00 1x13A 401 1.80e+00 1p5zB 263 1.93e+00 c.37.1.1 87815 2fliA 220 1.95e+00 1pn0A 665 2.02e+00 c.3.1.2,c.47.1.10,d.16.1.2 94918,94919,94920 1ysjA 404 2.32e+00 1rtqA 299 2.71e+00 c.56.5.4 97819 1fp3A 402 2.72e+00 1fp3A a.102.1.3 18842 1izmA 184 2.73e+00 a.199.1.1 90725 1tl9A 339 2.77e+00 1j5sA 463 2.89e+00 c.1.9.8 71580 1omrA 201 2.92e+00 a.39.1.5 93349 1cjcA 460 3.83e+00 1cjcA c.3.1.1,c.4.1.1 30319,30604 2frnA 278 4.35e+00 1vgyA 393 4.95e+00 c.56.5.4,d.58.19.1 100620,100621 1dpe 507 4.99e+00 1dpe c.94.1.1 35799 1vplA 256 5.18e+00 1wa3A 205 5.63e+00 1o0xA 262 6.13e+00 d.127.1.1 80755 1o4vA 183 6.34e+00 c.23.8.1 86628 1s0aA 429 6.53e+00 c.67.1.4 98263 1dxy 333 6.66e+00 1dxy c.2.1.4,c.23.12.1 30094,31354 1hw5A 210 7.45e+00 2cgpA a.4.5.4,b.82.3.2 16098,28137 1tqjA 230 7.51e+00 c.1.2.2 107228 2aawA 222 8.50e+00 1tz9A 367 8.84e+00 c.1.15.6 107466 1ks8A 433 8.94e+00 a.102.1.2 77519 1im8A 244 9.56e+00 c.66.1.14 66212 1ve1A 304 9.61e+00 1oktA 211 1.01e+01 a.45.1.1,c.47.1.5 93272,93273 1x9iA 302 1.12e+01 1wdyA 285 1.15e+01 2ab5A 269 1.15e+01 1ad1A 266 1.19e+01 1aj2 c.1.21.1 29668 1j4aA 333 1.21e+01 c.2.1.4,c.23.12.1 71502,71503 1el5A 389 1.22e+01 1b3mA c.3.1.2,d.16.1.3 30369,37937 2g7lA 243 1.29e+01 1vljA 407 1.30e+01 e.22.1.2 108832 1vheA 373 1.43e+01 b.49.3.1,c.56.5.4 100669,100670 1ohlA 342 1.44e+01 c.1.10.3 87035 1axn 323 1.54e+01 1avc a.65.1.1 18149 1yqhA 109 1.56e+01 1iugA 352 1.58e+01 c.67.1.3 90699 1vp8A 201 1.60e+01 1sviA 195 1.63e+01 c.37.1.8 106048 1qxyA 252 1.65e+01 d.127.1.1 96565 1yz7A 188 1.66e+01 1tu7A 208 1.71e+01 1vk9A 151 1.71e+01 c.139.1.1 108640 1woyA 500 1.73e+01 2aebA 322 1.73e+01 1kid 203 1.77e+01 1derA c.8.5.1 30771 1gk9A 260 1.82e+01 d.153.1.2 65246 1iloA 77 1.82e+01 c.47.1.1 66205 1nbaA 264 1.85e+01 1nbaA c.33.1.3 31753 1uayA 242 1.87e+01 c.2.1.2 88390 1fc4A 401 1.88e+01 1bs0A c.67.1.4 59760 1o58A 303 1.90e+01 c.79.1.1 92491 1vloA 381 1.92e+01 b.44.2.1,d.250.1.1 108838,108839 1xnzA 264 1.95e+01 1m7yA 435 1.96e+01 c.67.1.4 78761 1yge 839 1.98e+01 1yge a.119.1.1,b.12.1.1 19234,23634 1w5qA 337 2.01e+01 1xd8A 289 2.02e+01 1scfA 273 2.02e+01 1exzA a.26.1.2 16873 1wjgA 137 2.13e+01 2bvbA 137 2.14e+01 1vpt 348 2.27e+01 3mag c.66.1.25 34207 2fvgA 340 2.32e+01 1d3vA 323 2.34e+01 1d3vA c.42.1.1 32559 1ab8A 220 2.39e+01 1azsA d.58.29.1 39414 2fiqA 420 2.42e+01 1in6A 334 2.42e+01 1hqcA a.4.5.11,c.37.1.20 62601,62602 2dh4A 340 2.47e+01 2fz0A 149 2.51e+01 2ewcA 126 2.60e+01 1xhkA 187 2.60e+01 1evsA 187 2.65e+01 1evsA a.26.1.1 16845 1nv8A 284 2.67e+01 c.66.1.30 86224 1l2tA 235 2.70e+01 c.37.1.12 73514 1lngA 87 2.72e+01 d.201.1.1 74045 1h70A 255 2.74e+01 1h70A d.126.1.3 60711 1m0uA 249 2.75e+01 a.45.1.1,c.47.1.5 78359,78360 1p99A 295 2.81e+01 c.94.1.1 94384 2bz1A 196 2.84e+01 1vixA 420 2.86e+01 c.56.5.4,d.58.19.1 100777,100778 2b3hA 329 2.89e+01 2oatA 439 2.90e+01 2dkb c.67.1.4 34452 1khdA 345 2.91e+01 a.46.2.1,c.27.1.1 77400,77401 2av4A 162 2.94e+01 1zosA 230 2.95e+01 1bcpF 99 2.99e+01 1prtF b.40.2.1 25142 1vr6A 350 3.00e+01 1gc0A 398 3.04e+01 c.67.1.3 70168 1pg4A 652 3.06e+01 e.23.1.1 88067 1qusA 322 3.14e+01 1ltm d.2.1.6 36991 3prn 289 3.14e+01 3prn f.4.3.1 43761 1rd5A 262 3.17e+01 1dq3A 454 3.17e+01 1dq3A b.86.1.2,d.50.3.1,d.95.2.2,d.95.2.2 28380,38798,40585,40586 1ugmA 125 3.20e+01 d.15.1.3 107827 1vjpA 394 3.25e+01 c.2.1.3,d.81.1.3 100828,100829 1in4A 334 3.26e+01 1hqcA a.4.5.11,c.37.1.20 62597,62598 1wo8A 126 3.27e+01 1jztA 246 3.29e+01 c.104.1.1 63319 1fm0E 150 3.38e+01 1fmaE d.41.5.1 38629 2b8nA 429 3.40e+01 2bbsA 290 3.47e+01 1cg2A 393 3.47e+01 1cg2A c.56.5.4,d.58.19.1 33844,39360 2asbA 251 3.54e+01 1l1eA 287 3.56e+01 c.66.1.18 73454 1vl4A 447 3.56e+01 d.283.1.1 108718 2ga9A 297 3.62e+01 1wy2A 351 3.65e+01 1a41 234 3.68e+01 1a41 d.163.1.2 42174 1wlsA 328 3.77e+01 1u4nA 310 3.84e+01 1em8B 112 3.86e+01 c.126.1.1 90458 1wy1A 172 3.88e+01 1oyzA 280 3.95e+01 a.118.1.16 93775 2acaA 189 3.98e+01 1l5wA 796 4.01e+01 c.87.1.4 73605 1vgjA 184 4.06e+01 1x79A 98 4.06e+01 1yemA 179 4.14e+01 1wl8A 189 4.15e+01 1gca 309 4.22e+01 1gca c.93.1.1 35659 2flsA 132 4.42e+01 1vr7A 142 4.47e+01 1ra0A 430 4.51e+01 1d3bB 91 4.52e+01 1d3bB b.38.1.1 24804 1xmeA 568 4.56e+01 1q7hA 153 4.57e+01 b.122.1.1,d.17.6.2 96042,96043 1dv1A 449 4.58e+01 1bncA b.84.2.1,c.30.1.1,d.142.1.2 28234,31641,41486 1h05A 146 4.59e+01 c.23.13.1 76433 1wmqA 147 4.64e+01 2avdA 219 4.67e+01 1ux8A 132 4.70e+01 1xmpA 170 4.73e+01 1kb0A 677 4.77e+01 a.3.1.6,b.70.1.1 68378,68379 1xcrA 316 4.85e+01 1vhwA 253 4.89e+01 c.56.2.1 100706 1ib8A 164 4.89e+01 b.38.2.1,d.52.4.1 71168,71169 2cfxA 144 4.95e+01 1i9zA 347 4.98e+01 1i9yA d.151.1.2 62102 2fb1A 226 5.03e+01 1f4pA 147 5.21e+01 5nul c.23.5.1 59651 1nd6A 354 5.33e+01 c.60.1.2 80407 1xo1A 291 5.36e+01 1exnA a.60.7.1,c.120.1.2 18086,33356 1wpuA 147 5.37e+01 1y14B 171 5.41e+01 1q7eA 428 5.53e+01 c.123.1.1 96035 2gi9A 56 5.60e+01 1g8iA 190 5.60e+01 1rec a.39.1.5 60363 1rgzA 363 5.63e+01 e.3.1.1 97457 1gxjA 186 5.64e+01 d.215.1.1 70707 1wv2A 265 5.66e+01 1cp2A 269 5.67e+01 1cp2A c.37.1.10 32269 1ul7A 102 5.68e+01 d.129.6.1 99540 1fr2A 86 5.72e+01 a.28.2.1 83256 1zanH 224 5.75e+01 1bsg 266 5.75e+01 1btl e.3.1.1 42729 1ispA 181 5.77e+01 c.69.1.18 76778 1t6cA 315 5.89e+01 c.55.1.8,c.55.1.8 106558,106559 1k8kF 168 5.95e+01 d.198.2.1 68312 1trb 320 5.96e+01 1trb c.3.1.5,c.3.1.5 30529,30530 1o4sA 389 6.16e+01 c.67.1.1 86620 1z00B 84 6.20e+01 1yn9A 169 6.28e+01 1g6hA 257 6.41e+01 1gajA c.37.1.12 60318 2bsjA 133 6.45e+01 1g61A 228 6.51e+01 1g61A d.126.1.1 41126 1jmvA 141 6.53e+01 c.26.2.4 66897 1pvvA 315 6.54e+01 c.78.1.1,c.78.1.1 95190,95191 1nm2A 317 6.55e+01 c.19.1.1,d.58.23.1 80654,80655 1gdhA 320 6.57e+01 1gdhA c.2.1.4,c.23.12.1 30095,31355 1cvl 319 6.57e+01 1cvl c.69.1.18 34786 2b5dX 528 6.87e+01 2bhoA 130 7.04e+01 1gvnA 90 7.17e+01 a.8.2.1 76353 1ustA 93 7.21e+01 a.4.5.13 99884 1yqtA 538 7.28e+01 1gudA 288 7.29e+01 c.93.1.1 83326 1nrlA 316 7.29e+01 a.123.1.1 92091 1qj4A 257 7.30e+01 1qj4A c.69.1.20 34796 2cy7A 396 7.31e+01 1rifA 282 7.31e+01 c.37.1.23 97507 2b9wA 424 7.32e+01 1augA 215 7.40e+01 1a2zA c.56.4.1 33798 1ekqA 272 7.44e+01 1c3qA c.72.1.2 34941 1wg8A 285 7.44e+01 1u7nA 336 7.50e+01 c.77.1.4 107726 1ydiA 263 7.53e+01 1wn5A 130 7.53e+01 1yloA 348 7.57e+01 1ub0A 258 7.67e+01 c.72.1.2 88394 1gy8A 397 7.68e+01 c.2.1.2 83376 1zp4A 304 7.74e+01 1qnaA 200 7.75e+01 1ytbA d.129.1.1,d.129.1.1 41226,41227 1q9rB 222 7.79e+01 b.1.1.1,b.1.1.2 96307,96308 1kyqA 274 7.91e+01 c.2.1.11,e.37.1.1 73281,73282 1r5iD 216 7.96e+01 a.202.1.1 97091 1o4tA 133 7.98e+01 b.82.1.9 86622 1xs5A 241 8.00e+01 1j75A 67 8.03e+01 a.4.5.19 62673 1cb0A 283 8.03e+01 1cb0A c.56.2.1 33790 1m48A 133 8.05e+01 a.26.1.2 74443 1z6oA 212 8.06e+01 1lk9A 448 8.08e+01 c.67.1.1 78057 1gnwA 211 8.13e+01 1gnwA a.45.1.1,c.47.1.5 17727,33021 1sw6A 327 8.17e+01 1sw6A d.211.1.1 19176 2aaoA 166 8.19e+01 1jyeA 349 8.28e+01 c.93.1.1 67455 1viaA 175 8.29e+01 c.37.1.2 100754 1qnxA 209 8.30e+01 1qnxA d.111.1.1 40914 1d7qA 143 8.38e+01 1d7qA b.40.4.5 25331 1ky3A 182 8.40e+01 c.37.1.8 73193 1b00A 127 8.43e+01 3chy c.23.1.1 31122 1gjwA 637 8.47e+01 b.71.1.1,c.1.8.1 60582,60583 1pu1A 94 8.50e+01 d.266.1.1 104307 1v7cA 351 8.60e+01 c.79.1.1 100446 2cbp 96 8.61e+01 2cbp b.6.1.1 22895 1xknA 355 8.76e+01 1lrzA 426 8.79e+01 a.2.7.4,d.108.1.4,d.108.1.4 78167,78168,78169 1z3eB 73 8.82e+01 1bsmA 201 8.92e+01 1avmA a.2.11.1,d.44.1.1 15780,38743