# List of top-scoring protein chains for t06-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1lam 484 4.19e-69 1lam c.50.1.1,c.56.5.3 33166,33829 1uz5A 402 7.19e-02 b.85.6.1,b.103.1.1,c.57.1.2 100217,100218,100219 1gc0A 398 2.09e-01 c.67.1.3 70168 1wcgA 464 1.17e+00 1pvtA 238 1.86e+00 c.74.1.1 95189 1h1yA 228 2.09e+00 c.1.2.2 76506 1pyfA 312 2.10e+00 c.1.7.1 95334 1qq9A 284 2.14e+00 1xjo c.56.5.4 33841 2etvA 346 2.46e+00 1tkjA 284 2.68e+00 1smbA 154 2.72e+00 d.111.1.1 105756 1dpe 507 2.83e+00 1dpe c.94.1.1 35799 2cybA 323 3.00e+00 1vkwA 218 3.29e+00 d.90.1.2 108695 1lrzA 426 3.37e+00 a.2.7.4,d.108.1.4,d.108.1.4 78167,78168,78169 1spvA 184 4.20e+00 c.50.1.2 98957 1rifA 282 4.41e+00 c.37.1.23 97507 1q6hA 224 4.42e+00 d.26.1.1 95975 1iloA 77 4.96e+00 c.47.1.1 66205 1nm2A 317 5.24e+00 c.19.1.1,d.58.23.1 80654,80655 2eryA 172 5.39e+00 1yqeA 282 5.80e+00 2fliA 220 5.87e+00 1vkhA 273 6.54e+00 c.69.1.32 108662 1yh1A 359 6.63e+00 1xnzA 264 6.80e+00 1pt6A 213 7.15e+00 c.62.1.1 95091 1b0uA 262 7.26e+00 1b0uA c.37.1.12 32370 1zjcA 418 7.52e+00 1l2tA 235 7.77e+00 c.37.1.12 73514 1o4tA 133 7.80e+00 b.82.1.9 86622 1q6uA 245 7.97e+00 d.26.1.1 95998 1tqjA 230 8.01e+00 c.1.2.2 107228 1e4mM 501 8.18e+00 1e70M c.1.8.4 59226 1z0sA 278 8.70e+00 1rtqA 299 8.79e+00 c.56.5.4 97819 1uayA 242 1.00e+01 c.2.1.2 88390 1cjcA 460 1.03e+01 1cjcA c.3.1.1,c.4.1.1 30319,30604 1zq6A 359 1.09e+01 1xklA 273 1.21e+01 2fh5A 185 1.21e+01 1rf6A 427 1.23e+01 d.68.2.2 97366 1jx4A 352 1.25e+01 d.240.1.1,e.8.1.7 90378,90379 1jnrA 643 1.25e+01 a.7.3.1,c.3.1.4,d.168.1.1 66966,66967,66968 1x13A 401 1.27e+01 2fjbA 643 1.28e+01 1ky3A 182 1.29e+01 c.37.1.8 73193 1fvpA 231 1.30e+01 1nfp c.1.16.2 29556 1ysjA 404 1.32e+01 1ua4A 455 1.38e+01 c.72.1.3 99128 1g8iA 190 1.40e+01 1rec a.39.1.5 60363 3prn 289 1.41e+01 3prn f.4.3.1 43761 1suwA 249 1.41e+01 e.52.1.1 106027 1pvvA 315 1.46e+01 c.78.1.1,c.78.1.1 95190,95191 1xg2B 153 1.48e+01 2d69A 430 1.52e+01 2ck3A 510 1.54e+01 2ck3D 482 1.56e+01 1wmsA 177 1.57e+01 c.37.1.8 109414 3daaA 277 1.61e+01 1daaA e.17.1.1 43272 1ijbA 202 1.63e+01 c.62.1.1 71229 1tqxA 227 1.63e+01 1ywnA 316 1.69e+01 1kmqA 184 1.71e+01 c.37.1.8 84412 2cwxA 430 1.71e+01 1mp8A 281 1.73e+01 d.144.1.7 91384 1s98A 107 1.75e+01 b.124.1.1 105377 1omrA 201 1.76e+01 a.39.1.5 93349 1qxyA 252 1.82e+01 d.127.1.1 96565 1yd9A 193 1.86e+01 1bob 320 1.91e+01 1bob d.108.1.1 40816 1efvB 255 2.03e+01 1efvB c.26.2.3 31634 1atzA 189 2.04e+01 1atzA c.62.1.1 34132 1kaeA 434 2.07e+01 c.82.1.2 72247 1xd8A 289 2.08e+01 1x6mA 196 2.12e+01 1dpgA 485 2.16e+01 1dpgA c.2.1.3,d.81.1.5 30074,39989 1vhoA 346 2.18e+01 b.49.3.1,c.56.5.4 100694,100695 1vheA 373 2.19e+01 b.49.3.1,c.56.5.4 100669,100670 1wy1A 172 2.22e+01 2bsxA 253 2.22e+01 1vctA 205 2.27e+01 1bco 327 2.30e+01 1bco b.48.1.1,c.55.3.3 26431,33676 2gdzA 267 2.30e+01 1yz4A 160 2.35e+01 2ashA 381 2.42e+01 1ulyA 192 2.49e+01 1g291 372 2.50e+01 1g291 1pn0A 665 2.56e+01 c.3.1.2,c.47.1.10,d.16.1.2 94918,94919,94920 1cp2A 269 2.60e+01 1cp2A c.37.1.10 32269 2bgkA 278 2.60e+01 1x9iA 302 2.64e+01 1axn 323 2.67e+01 1avc a.65.1.1 18149 1ugpB 226 2.70e+01 b.34.4.4 107832 1oxwA 373 2.77e+01 c.19.1.3 87539 1vk3A 615 2.77e+01 d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1 100846,100847,100848,100849 1a41 234 2.78e+01 1a41 d.163.1.2 42174 1q74A 303 2.85e+01 c.134.1.1 96019 1wkbA 810 2.90e+01 1cnv 299 2.98e+01 1cnv c.1.8.5 28989 1h5wA 309 2.99e+01 e.27.1.1 65635 2fflA 756 3.03e+01 1i4fA 275 3.04e+01 1agdA b.1.1.2,d.19.1.1 61687,61688 1qlmA 316 3.08e+01 1qlmA d.147.1.1 41765 1usyA 275 3.12e+01 2bjvA 265 3.15e+01 1nf3A 195 3.20e+01 c.37.1.8 85594 2a6hC 1119 3.21e+01 1qnxA 209 3.24e+01 1qnxA d.111.1.1 40914 1f3vA 179 3.27e+01 1f3vA d.58.22.1 39382 1wrvA 308 3.31e+01 1nnlA 225 3.34e+01 c.108.1.4 85906 1ec7A 446 3.34e+01 1bqg c.1.11.2,d.54.1.1 29218,38862 1i1rB 181 3.44e+01 1i1rB a.26.1.1 61548 1iq8A 582 3.50e+01 c.1.20.1,b.122.1.1,d.17.6.1 71270,83074,83075 2bbhA 269 3.54e+01 1kq3A 376 3.63e+01 e.22.1.2 68790 1d2vC 466 3.64e+01 1mhlC 2c07A 285 3.64e+01 2a19A 175 3.66e+01 1ez0A 510 3.69e+01 1eyyA c.82.1.1 35385 1hqz1 141 3.69e+01 1gnxA 479 3.82e+01 c.1.8.4 76241 1fcyA 236 3.85e+01 2lbd a.123.1.1 19282 1ykdA 398 3.88e+01 1aisB 200 3.88e+01 1aisB a.74.1.2,a.74.1.2 18384,18385 1m93C 41 3.93e+01 2ajrA 331 3.94e+01 1g8pA 350 3.96e+01 1g8pA c.37.1.20 60376 1v8yA 170 3.96e+01 1uzmA 247 3.97e+01 1ja1A 622 3.98e+01 1amoA b.43.4.1,c.23.5.2,c.25.1.4 62803,62804,62805 1vj0A 380 3.98e+01 b.35.1.2,c.2.1.1 100786,100787 1hs6A 611 4.02e+01 1hs6A a.118.1.7,b.98.1.1,d.92.1.13 61233,61234,61235 1ve1A 304 4.03e+01 1r7mA 235 4.09e+01 1v7pC 200 4.18e+01 c.62.1.1 108408 2bogX 286 4.19e+01 1cg2A 393 4.27e+01 1cg2A c.56.5.4,d.58.19.1 33844,39360 1xtqA 177 4.37e+01 1bh9B 89 4.37e+01 1bh9B a.22.1.3 16485 1womA 271 4.39e+01 1tx2A 297 4.45e+01 c.1.21.1 107420 1jztA 246 4.50e+01 c.104.1.1 63319 1uwzA 136 4.50e+01 c.97.1.1 108081 1n7kA 234 4.50e+01 c.1.10.1 85374 1qyiA 384 4.60e+01 c.108.1.13 96595 1b6g 310 4.60e+01 1b6g c.69.1.8 34661 1krhA 338 4.69e+01 b.43.4.2,c.25.1.2,d.15.4.2 72891,72892,72893 1jtvA 327 4.73e+01 c.2.1.2 84230 2b0aA 186 4.74e+01 1x88A 359 4.81e+01 1k0wA 231 4.83e+01 c.74.1.1 77220 2bo9B 222 4.98e+01 1h8eA 510 5.03e+01 1skyB a.69.1.1,b.49.1.1,c.37.1.11 60738,60739,60740 1x79A 98 5.04e+01 1wlyA 333 5.06e+01 1fm0E 150 5.07e+01 1fmaE d.41.5.1 38629 1qwnA 1045 5.16e+01 a.8.3.1,b.30.5.6,c.6.2.1 96487,96488,96489 1b8oA 284 5.17e+01 1b8oA c.56.2.1 33762 1f46A 140 5.17e+01 1f46A d.129.4.1 59643 1h8eD 482 5.18e+01 1skyE a.69.1.1,b.49.1.1,c.37.1.11 60747,60748,60749 1kao 167 5.22e+01 1ctqA c.37.1.8 32014 1ve4A 206 5.23e+01 1uarA 285 5.30e+01 c.46.1.2,c.46.1.2 107762,107763 1vcoA 550 5.33e+01 c.23.16.1,c.37.1.10 108508,108509 1qwoA 442 5.34e+01 c.60.1.2 104620 1dkuA 317 5.38e+01 1dkuA c.61.1.2,c.61.1.2 34118,34119 1zm7A 230 5.44e+01 1vphA 149 5.45e+01 1squA 155 5.52e+01 d.252.1.1 98971 1m48A 133 5.54e+01 a.26.1.2 74443 1hw7A 255 5.61e+01 1i7fA d.193.1.1 61297 1wq3A 322 5.67e+01 1h0hA 977 5.67e+01 b.52.2.2,c.81.1.1 76435,76436 1j1bA 420 5.69e+01 d.144.1.7 90758 1evsA 187 5.71e+01 1evsA a.26.1.1 16845 1rylA 167 5.86e+01 d.276.1.1 105124 1ymiA 334 5.87e+01 1syyA 346 5.89e+01 a.25.1.2 106126 1s5jA 847 6.01e+01 1mxrA 375 6.03e+01 a.25.1.2 85197 1nfvA 179 6.04e+01 a.25.1.1 85642 1in6A 334 6.14e+01 1hqcA a.4.5.11,c.37.1.20 62601,62602 2bi0A 337 6.22e+01 1v1dA 31 6.23e+01 1unlD 208 6.25e+01 1li4A 432 6.26e+01 c.2.1.4,c.23.12.3 84616,84617 1x7dA 350 6.37e+01 1f4pA 147 6.43e+01 5nul c.23.5.1 59651 1ihkA 174 6.65e+01 1bfg b.42.1.1 62384 1gpjA 404 6.69e+01 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 1h05A 146 6.80e+01 c.23.13.1 76433 1wf3A 301 6.81e+01 1xf1A 926 6.84e+01 2eu9A 355 6.86e+01 1uuyA 167 6.93e+01 c.57.1.1 108059 1vcc 77 7.11e+01 1vcc d.121.1.1 41092 2g1uA 155 7.25e+01 1s12A 94 7.31e+01 1gk9A 260 7.32e+01 d.153.1.2 65246 1khdA 345 7.36e+01 a.46.2.1,c.27.1.1 77400,77401 1fgkA 310 7.36e+01 1fgkA d.144.1.7 41693 1vlgA 176 7.38e+01 a.25.1.1 108816 1pszA 303 7.38e+01 1toaA c.92.2.2 35600 1l1lA 739 7.58e+01 c.7.1.4 73470 2b8eA 273 7.59e+01 1pieA 419 7.59e+01 d.14.1.5,d.58.26.7 94706,94707 1ovlA 271 7.67e+01 a.123.1.1 87455 2fsqA 243 7.68e+01 1cnt1 187 7.68e+01 1cnt3 1tm9A 137 7.72e+01 a.225.1.1 107150 1eajA 126 7.76e+01 1f5wA b.1.1.1 59401 1uxjA 309 7.85e+01 c.2.1.5,d.162.1.1 108112,108113 1za0A 275 7.91e+01 1c8cA 64 7.96e+01 1azpA b.34.13.1 59084 1ctf 74 7.97e+01 1ctf d.45.1.1 38759 1wl8A 189 8.04e+01 1vclA 432 8.11e+01 b.42.2.1,b.42.2.1,d.281.1.1 108498,108499,108500 1rqbA 539 8.13e+01 a.5.7.2,c.1.10.5 105057,105058 2gh1A 301 8.14e+01 2gr8A 99 8.18e+01 1pmi 440 8.20e+01 1pmi b.82.1.3 28114 1f0yA 302 8.24e+01 2hdhA a.100.1.3,c.2.1.6 18793,30197 2bvfA 459 8.26e+01 1u9yA 284 8.27e+01 1n1fA 159 8.29e+01 a.26.1.3 79803 1vplA 256 8.30e+01 1twfC 318 8.34e+01 2ac3A 316 8.35e+01 1w07A 659 8.35e+01 1swvA 267 8.38e+01 1pu1A 94 8.45e+01 d.266.1.1 104307 2f06A 144 8.48e+01 1owcA 427 8.52e+01 a.103.1.1 104039 1o17A 345 8.57e+01 a.46.2.1,c.27.1.1 80765,80766 1bkb 136 8.57e+01 1bkb b.34.5.2,b.40.4.5 24609,25341 1nw1A 429 8.58e+01 d.144.1.8 86286 1zb9A 143 8.58e+01 1lngA 87 8.60e+01 d.201.1.1 74045 1o0xA 262 8.73e+01 d.127.1.1 80755 1r5iD 216 8.82e+01 a.202.1.1 97091 2g5cA 281 8.86e+01 1ynfA 458 8.88e+01 2c46A 241 8.89e+01 2ilk 160 8.96e+01 2ilk a.26.1.3 16885