# List of top-scoring protein chains for t06-100-30-dssp-ebghstl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1lam 484 1.19e-76 1lam c.50.1.1,c.56.5.3 33166,33829 1uz5A 402 1.49e-02 b.85.6.1,b.103.1.1,c.57.1.2 100217,100218,100219 1h1yA 228 2.48e-01 c.1.2.2 76506 1qq9A 284 6.29e-01 1xjo c.56.5.4 33841 1tkjA 284 8.91e-01 1lrzA 426 9.65e-01 a.2.7.4,d.108.1.4,d.108.1.4 78167,78168,78169 2fliA 220 1.27e+00 1x13A 401 1.35e+00 1oxwA 373 1.54e+00 c.19.1.3 87539 1tqjA 230 1.65e+00 c.1.2.2 107228 1iloA 77 1.85e+00 c.47.1.1 66205 1g8iA 190 1.97e+00 1rec a.39.1.5 60363 1yh1A 359 2.02e+00 1omrA 201 2.11e+00 a.39.1.5 93349 1pvtA 238 2.35e+00 c.74.1.1 95189 1jnrA 643 2.42e+00 a.7.3.1,c.3.1.4,d.168.1.1 66966,66967,66968 2fjbA 643 2.65e+00 1mp8A 281 2.66e+00 d.144.1.7 91384 1nm2A 317 2.68e+00 c.19.1.1,d.58.23.1 80654,80655 1tqxA 227 2.93e+00 1xd8A 289 2.93e+00 1h05A 146 2.96e+00 c.23.13.1 76433 1zq6A 359 3.00e+00 1q6hA 224 3.15e+00 d.26.1.1 95975 1q6uA 245 3.19e+00 d.26.1.1 95998 1b0uA 262 3.74e+00 1b0uA c.37.1.12 32370 1dpe 507 3.77e+00 1dpe c.94.1.1 35799 2gdzA 267 3.81e+00 1g291 372 3.91e+00 1g291 1ulyA 192 4.14e+00 1rtqA 299 4.24e+00 c.56.5.4 97819 1cg2A 393 4.27e+00 1cg2A c.56.5.4,d.58.19.1 33844,39360 1vkwA 218 4.46e+00 d.90.1.2 108695 1l2tA 235 4.68e+00 c.37.1.12 73514 1o4tA 133 4.75e+00 b.82.1.9 86622 1hs6A 611 4.98e+00 1hs6A a.118.1.7,b.98.1.1,d.92.1.13 61233,61234,61235 1ywnA 316 5.12e+00 1nw1A 429 5.63e+00 d.144.1.8 86286 1duvG 333 5.68e+00 1othA c.78.1.1,c.78.1.1 35228,35229 1yqeA 282 6.28e+00 1gc0A 398 6.57e+00 c.67.1.3 70168 2ac3A 316 6.84e+00 1h8eA 510 7.14e+00 1skyB a.69.1.1,b.49.1.1,c.37.1.11 60738,60739,60740 1pt6A 213 7.17e+00 c.62.1.1 95091 2ck3A 510 7.79e+00 2ashA 381 8.14e+00 3prn 289 8.31e+00 3prn f.4.3.1 43761 1syyA 346 8.58e+00 a.25.1.2 106126 1cp2A 269 8.63e+00 1cp2A c.37.1.10 32269 1spvA 184 9.08e+00 c.50.1.2 98957 1pvvA 315 9.33e+00 c.78.1.1,c.78.1.1 95190,95191 1z47A 355 9.34e+00 1zsqA 528 9.51e+00 2fk8A 318 9.52e+00 1nf3A 195 9.86e+00 c.37.1.8 85594 1vj0A 380 1.01e+01 b.35.1.2,c.2.1.1 100786,100787 2fh5A 185 1.02e+01 1wcgA 464 1.03e+01 1cjcA 460 1.05e+01 1cjcA c.3.1.1,c.4.1.1 30319,30604 1wy1A 172 1.06e+01 1z2nX 324 1.07e+01 1n46A 258 1.08e+01 a.123.1.1 85315 1ykdA 398 1.08e+01 1yd9A 193 1.09e+01 2b0aA 186 1.10e+01 1g8pA 350 1.12e+01 1g8pA c.37.1.20 60376 2fsqA 243 1.15e+01 1o17A 345 1.17e+01 a.46.2.1,c.27.1.1 80765,80766 2ilk 160 1.18e+01 2ilk a.26.1.3 16885 1wmsA 177 1.24e+01 c.37.1.8 109414 1qnrA 344 1.24e+01 1qnoA c.1.8.3 28834 1qyiA 384 1.29e+01 c.108.1.13 96595 1ps1A 337 1.31e+01 1ps1A a.128.1.4 19450 1dkuA 317 1.33e+01 1dkuA c.61.1.2,c.61.1.2 34118,34119 2d69A 430 1.45e+01 1pn0A 665 1.46e+01 c.3.1.2,c.47.1.10,d.16.1.2 94918,94919,94920 1eexB 224 1.49e+01 1dioB c.51.3.1 33213 1ihgA 370 1.57e+01 2cpl a.118.8.1,b.62.1.1 62380,62381 2etvA 346 1.60e+01 1o20A 427 1.62e+01 c.82.1.1 86556 1vd3A 217 1.64e+01 2eryA 172 1.66e+01 1kmqA 184 1.68e+01 c.37.1.8 84412 1axn 323 1.69e+01 1avc a.65.1.1 18149 1vquA 374 1.73e+01 1atzA 189 1.88e+01 1atzA c.62.1.1 34132 1za0A 275 1.90e+01 2cwxA 430 1.90e+01 1xklA 273 1.94e+01 1ja1A 622 1.94e+01 1amoA b.43.4.1,c.23.5.2,c.25.1.4 62803,62804,62805 1ppjC 379 1.96e+01 f.32.1.1,f.21.1.2 104256,104257 1wkbA 810 1.97e+01 1em8B 112 2.10e+01 c.126.1.1 90458 1x7dA 350 2.15e+01 1uxjA 309 2.17e+01 c.2.1.5,d.162.1.1 108112,108113 1zjcA 418 2.18e+01 1jx4A 352 2.18e+01 d.240.1.1,e.8.1.7 90378,90379 1unlD 208 2.19e+01 1eswA 500 2.20e+01 1cwyA c.1.8.1 59500 1kaeA 434 2.20e+01 c.82.1.2 72247 1o08A 221 2.22e+01 c.108.1.6 86525 1shuX 182 2.24e+01 c.62.1.1 98882 1ky3A 182 2.26e+01 c.37.1.8 73193 1efvB 255 2.29e+01 1efvB c.26.2.3 31634 1yemA 179 2.32e+01 2fp4B 395 2.32e+01 1vhuA 211 2.38e+01 c.50.1.2 100703 1b8oA 284 2.41e+01 1b8oA c.56.2.1 33762 1l1eA 287 2.41e+01 c.66.1.18 73454 1pieA 419 2.43e+01 d.14.1.5,d.58.26.7 94706,94707 1j4aA 333 2.45e+01 c.2.1.4,c.23.12.1 71502,71503 1yz4A 160 2.52e+01 1fgkA 310 2.54e+01 1fgkA d.144.1.7 41693 1xi1A 575 2.54e+01 1d2vC 466 2.60e+01 1mhlC 1mh1 186 2.60e+01 1eesA c.37.1.8 32002 1ks9A 291 2.81e+01 a.100.1.7,c.2.1.6 68857,68858 1li4A 432 2.84e+01 c.2.1.4,c.23.12.3 84616,84617 1kq3A 376 2.88e+01 e.22.1.2 68790 1f3vA 179 2.95e+01 1f3vA d.58.22.1 39382 2bbhA 269 2.96e+01 1i4fA 275 3.00e+01 1agdA b.1.1.2,d.19.1.1 61687,61688 1s98A 107 3.05e+01 b.124.1.1 105377 1d2mA 665 3.10e+01 1d2mA c.37.1.19,c.37.1.19 32417,32418 1w07A 659 3.17e+01 1yqgA 263 3.25e+01 2d1eA 248 3.30e+01 1vl4A 447 3.30e+01 d.283.1.1 108718 1wyuB 474 3.33e+01 1ijbA 202 3.39e+01 c.62.1.1 71229 1xrsA 516 3.40e+01 1rp4A 389 3.43e+01 a.227.1.1 105027 1tzyD 103 3.45e+01 a.22.1.1 107533 1fvpA 231 3.45e+01 1nfp c.1.16.2 29556 1kblA 873 3.45e+01 c.1.12.2,c.8.1.1,d.142.1.5 68384,68385,68386 2cybA 323 3.46e+01 1b6g 310 3.47e+01 1b6g c.69.1.8 34661 1zb9A 143 3.50e+01 1womA 271 3.54e+01 1evsA 187 3.57e+01 1evsA a.26.1.1 16845 2bo9B 222 3.58e+01 1bob 320 3.61e+01 1bob d.108.1.1 40816 1cnv 299 3.61e+01 1cnv c.1.8.5 28989 1qwoA 442 3.61e+01 c.60.1.2 104620 1zy7A 403 3.66e+01 1neiA 60 3.67e+01 d.253.1.1 91843 1n1fA 159 3.70e+01 a.26.1.3 79803 1in6A 334 3.70e+01 1hqcA a.4.5.11,c.37.1.20 62601,62602 1b00A 127 3.71e+01 3chy c.23.1.1 31122 2eu9A 355 3.74e+01 1e5mA 416 3.77e+01 1dd8A c.95.1.1,c.95.1.1 58973,58974 1p7tA 731 3.85e+01 c.1.13.1 94319 1eu8A 409 3.86e+01 1eu8A c.94.1.1 59502 1squA 155 3.89e+01 d.252.1.1 98971 2dcnA 311 3.91e+01 1svsA 353 3.94e+01 c.37.1.8 106051 1o54A 277 3.98e+01 c.66.1.13 92482 1uf2A 1019 4.04e+01 e.28.1.2 99289 1vphA 149 4.05e+01 1m93C 41 4.09e+01 1wrvA 308 4.11e+01 1uzmA 247 4.12e+01 2bwvA 440 4.13e+01 1mjhA 162 4.13e+01 1mjhA c.26.2.4 31639 2ck3D 482 4.16e+01 1ihkA 174 4.18e+01 1bfg b.42.1.1 62384 1x67A 146 4.19e+01 1v8bA 479 4.21e+01 1vk3A 615 4.26e+01 d.79.4.1,d.79.4.1,d.139.1.1,d.139.1.1 100846,100847,100848,100849 2d2mC 147 4.27e+01 1zhxA 438 4.32e+01 1pszA 303 4.38e+01 1toaA c.92.2.2 35600 1ujnA 348 4.46e+01 e.22.1.1 99460 1h5wA 309 4.48e+01 e.27.1.1 65635 2cxnA 557 4.50e+01 1uwzA 136 4.53e+01 c.97.1.1 108081 1x79A 98 4.53e+01 2c1iA 431 4.55e+01 1v8yA 170 4.59e+01 1e4mM 501 4.66e+01 1e70M c.1.8.4 59226 1h8eD 482 4.68e+01 1skyE a.69.1.1,b.49.1.1,c.37.1.11 60747,60748,60749 1gk8A 475 4.69e+01 c.1.14.1,d.58.9.1 65234,65235 1toaA 313 4.77e+01 1toaA c.92.2.2 35598 1t95A 240 4.78e+01 a.5.8.1,d.235.1.2,d.58.11.3 106705,106706,106707 1ymiA 334 4.89e+01 1bh9B 89 4.98e+01 1bh9B a.22.1.3 16485 1xxaA 78 5.00e+01 1xxaA d.74.2.1 39700 1xnzA 264 5.02e+01 1f0yA 302 5.02e+01 2hdhA a.100.1.3,c.2.1.6 18793,30197 1ysjA 404 5.08e+01 1c4oA 664 5.12e+01 1d2mA c.37.1.19,c.37.1.19 32415,32416 1ppjG 81 5.15e+01 f.23.13.1 104263 1qgdA 662 5.25e+01 c.36.1.6,c.36.1.10,c.48.1.1 88367,88368,88369 2rslA 140 5.26e+01 2rslA c.53.1.1 33345 2fd5A 180 5.28e+01 1je0A 236 5.28e+01 c.56.2.1 66581 1el5A 389 5.29e+01 1b3mA c.3.1.2,d.16.1.3 30369,37937 1iqvA 218 5.29e+01 1rss a.75.1.1 62661 2a97A 439 5.29e+01 1ua4A 455 5.30e+01 c.72.1.3 99128 1t46A 313 5.34e+01 d.144.1.7 106397 1sqgA 429 5.39e+01 a.79.1.3,c.66.1.38 105912,105913 1vg8A 207 5.41e+01 c.37.1.8 108606 1u0fA 564 5.42e+01 1y60A 169 5.43e+01 1khtA 192 5.47e+01 c.37.1.1 84401 1jb9A 316 5.47e+01 1fnc b.43.4.2,c.25.1.1 62840,62841 1s12A 94 5.52e+01 1anf 370 5.54e+01 4mbp c.94.1.1 35776 1g0sA 209 5.64e+01 1g0sA d.113.1.1 60187 1sxvA 172 5.65e+01 1v7pC 200 5.67e+01 c.62.1.1 108408 1vjvA 415 5.69e+01 d.3.1.9 108632 1umnA 165 5.71e+01 a.25.1.1 99607 2aaxA 275 5.74e+01 1yb2A 275 5.76e+01 1jtvA 327 5.81e+01 c.2.1.2 84230 2bswA 146 5.86e+01 1pswA 348 5.90e+01 c.87.1.7 88287 1g8kA 825 5.90e+01 1g8jA b.52.2.2,c.81.1.1 26920,35328 1qsmA 152 5.93e+01 1qsmA d.108.1.1 40808 1hm6A 346 5.97e+01 1avc a.65.1.1 18147 1jysA 242 6.05e+01 c.56.2.1 77216 1otkA 249 6.07e+01 a.25.1.2 93521 1xeqA 103 6.17e+01 1x9iA 302 6.19e+01 1pb1A 416 6.22e+01 c.77.1.1 88014 1a41 234 6.26e+01 1a41 d.163.1.2 42174 1fqtA 112 6.29e+01 1fqtA b.33.1.1 24441 2bg5A 324 6.30e+01 1qlmA 316 6.31e+01 1qlmA d.147.1.1 41765 1kbvA 327 6.32e+01 b.6.1.3,b.6.1.3 68395,68396 1wzvA 155 6.36e+01 1e8aA 91 6.40e+01 1b4cA a.39.1.2 17188 1yyqA 374 6.43e+01 1ve1A 304 6.47e+01 2audA 257 6.50e+01 2ajrA 331 6.50e+01 1r1hA 696 6.51e+01 d.92.1.4 104756 1x9dA 538 6.52e+01 1sznA 417 6.57e+01 b.71.1.1,c.1.8.1 106162,106163 1suwA 249 6.61e+01 e.52.1.1 106027 1mo9A 523 6.61e+01 c.3.1.5,c.3.1.5,d.87.1.1 79341,79342,79343 1zthA 258 6.63e+01 1om1A 332 6.64e+01 d.144.1.7 93347 1c8cA 64 6.65e+01 1azpA b.34.13.1 59084 1zm7A 230 6.67e+01 1ynfA 458 6.68e+01 2absA 383 6.73e+01 1ejxB 101 6.76e+01 b.85.3.1 83183 2gkpA 167 6.79e+01 1wf7A 103 6.80e+01 1noyA 388 6.87e+01 1clqA c.55.3.5 33713 1pjcA 361 6.90e+01 1sayA c.2.1.4,c.23.12.2 30101,31361 1lucB 324 6.90e+01 1lucA c.1.16.1 29548 1kyhA 276 6.93e+01 c.72.1.4 73222 1e8cA 498 6.95e+01 c.98.1.1,c.59.1.1,c.72.2.1 59377,59378,59379 1vkmA 297 6.99e+01 c.138.1.1 108670 1h2eA 207 7.04e+01 c.60.1.1 70857 1dq3A 454 7.08e+01 1dq3A b.86.1.2,d.50.3.1,d.95.2.2,d.95.2.2 28380,38798,40585,40586 1yqdA 366 7.12e+01 1vhrA 184 7.13e+01 1vhrA c.45.1.1 32651 1h5uA 842 7.14e+01 1a8i c.87.1.4 60655 2fl7A 232 7.15e+01 1uayA 242 7.18e+01 c.2.1.2 88390 1paz 123 7.22e+01 1bqk b.6.1.1 22878 2etsA 128 7.22e+01 1txnA 328 7.26e+01 1vkhA 273 7.29e+01 c.69.1.32 108662 2c31A 568 7.33e+01 1vgjA 184 7.37e+01 1twfC 318 7.37e+01 1k0eA 453 7.41e+01 d.161.1.1 67938 2bjvA 265 7.47e+01 1yzhA 214 7.48e+01 1ez0A 510 7.51e+01 1eyyA c.82.1.1 35385 1pyfA 312 7.53e+01 c.1.7.1 95334 1a59 378 7.55e+01 1aj8A a.103.1.1 18902 2bogX 286 7.58e+01 1ea5A 537 7.62e+01 2bce c.69.1.1 34592 1khdA 345 7.63e+01 a.46.2.1,c.27.1.1 77400,77401 1bli 483 7.63e+01 1bli b.71.1.1,c.1.8.1 27715,28702 1rypH 205 7.66e+01 d.153.1.4 41876 1ohvA 472 7.67e+01 c.67.1.4 93031 1wdiA 345 7.73e+01 1zcjA 463 7.76e+01 1vcoA 550 7.88e+01 c.23.16.1,c.37.1.10 108508,108509 2bsxA 253 7.88e+01 1gnwA 211 7.92e+01 1gnwA a.45.1.1,c.47.1.5 17727,33021 1f5mA 180 7.94e+01 1f5mB d.110.2.1 40895 1zosA 230 7.98e+01 1q2lA 939 7.98e+01 1f4pA 147 8.01e+01 5nul c.23.5.1 59651 1m6sA 347 8.01e+01 c.67.1.1 78701 1ymtA 246 8.08e+01 1j24A 143 8.18e+01 c.52.1.20 84008 2c4nA 250 8.19e+01 1ta0A 197 8.26e+01 c.108.1.16 106729 2fb1A 226 8.30e+01 1zjrA 211 8.32e+01 1n7kA 234 8.35e+01 c.1.10.1 85374 2b8eA 273 8.38e+01 1s5jA 847 8.38e+01 1k0fA 277 8.40e+01 c.92.2.2 71974 1o3yA 166 8.44e+01 c.37.1.8 86618 1jyaA 130 8.44e+01 d.198.1.1 67453 1hu3A 260 8.48e+01 1hu3A a.118.1.14 19137 1bvyF 191 8.49e+01 1bvyF c.23.5.1 31207 1swvA 267 8.56e+01 1xtqA 177 8.56e+01 1r7mA 235 8.57e+01 1mxiA 160 8.59e+01 c.116.1.1 79646 1w7bA 339 8.59e+01 1gpjA 404 8.60e+01 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 1whsA 255 8.63e+01 1ivyA c.69.1.5 34649 1t7vA 278 8.67e+01 1a3c 181 8.69e+01 1a3c c.61.1.1 34095 1ykwA 435 8.76e+01 1uu1A 335 8.77e+01 c.67.1.1 99993