# List of top-scoring protein chains for t04-100-30-stride-ebghtl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1lam 484 6.01e-63 1lam c.50.1.1,c.56.5.3 33166,33829 1yd9A 193 1.37e-01 1ijgA 309 7.00e-01 1fouA e.27.1.1 62493 1vkhA 273 1.25e+00 c.69.1.32 108662 1tx4B 178 1.39e+00 1ctqA c.37.1.8 32045 1x13A 401 1.56e+00 1kpgA 287 1.60e+00 c.66.1.18 68735 1h5wA 309 1.73e+00 e.27.1.1 65635 1vkwA 218 2.00e+00 d.90.1.2 108695 1kmqA 184 2.28e+00 c.37.1.8 84412 1nf3A 195 2.37e+00 c.37.1.8 85594 1qwoA 442 2.53e+00 c.60.1.2 104620 1uz5A 402 3.22e+00 b.85.6.1,b.103.1.1,c.57.1.2 100217,100218,100219 1ja1A 622 3.57e+00 1amoA b.43.4.1,c.23.5.2,c.25.1.4 62803,62804,62805 1zr5A 214 5.72e+00 1u2eA 289 5.91e+00 1wmsA 177 6.20e+00 c.37.1.8 109414 1g291 372 7.83e+00 1g291 1f46A 140 8.05e+00 1f46A d.129.4.1 59643 1z47A 355 8.58e+00 1hs6A 611 8.77e+00 1hs6A a.118.1.7,b.98.1.1,d.92.1.13 61233,61234,61235 1e79A 510 9.37e+00 1skyB a.69.1.1,b.49.1.1,c.37.1.11 18269,26434,32314 2fsqA 243 9.52e+00 1txnA 328 9.74e+00 1ec7A 446 1.02e+01 1bqg c.1.11.2,d.54.1.1 29218,38862 1h8eA 510 1.04e+01 1skyB a.69.1.1,b.49.1.1,c.37.1.11 60738,60739,60740 1ua4A 455 1.05e+01 c.72.1.3 99128 1rthA 560 1.15e+01 1rthA c.55.3.1,e.8.1.2 33576,43028 1iw7C 1119 1.16e+01 e.29.1.1 71474 1iloA 77 1.25e+01 c.47.1.1 66205 1xppA 115 1.30e+01 1pv9A 348 1.32e+01 c.55.2.1,d.127.1.1 95157,95158 1h1yA 228 1.36e+01 c.1.2.2 76506 1uekA 275 1.37e+01 d.14.1.5,d.58.26.5 88483,88484 1ac5 483 1.40e+01 1ac5 c.69.1.5 34653 1tkjA 284 1.42e+01 2ck3A 510 1.46e+01 1g8pA 350 1.54e+01 1g8pA c.37.1.20 60376 1g8iA 190 1.56e+01 1rec a.39.1.5 60363 2atxA 194 1.56e+01 1bvyF 191 1.60e+01 1bvyF c.23.5.1 31207 1pg4A 652 1.65e+01 e.23.1.1 88067 1lrzA 426 1.70e+01 a.2.7.4,d.108.1.4,d.108.1.4 78167,78168,78169 1o4tA 133 1.71e+01 b.82.1.9 86622 1x6mA 196 1.72e+01 1vrtA 560 1.73e+01 1rthA c.55.3.1,e.8.1.2 33574,43023 1l1eA 287 1.79e+01 c.66.1.18 73454 1b1cA 181 1.82e+01 1amoA c.23.5.2 31212 1e5mA 416 1.87e+01 1dd8A c.95.1.1,c.95.1.1 58973,58974 2f06A 144 1.91e+01 1yirA 408 1.92e+01 1xjo 284 1.95e+01 1xjo c.56.5.4 33843 1s8fA 177 1.97e+01 c.37.1.8 105370 1qxyA 252 1.99e+01 d.127.1.1 96565 1jdpA 441 2.01e+01 c.93.1.1 62906 1xnzA 264 2.05e+01 1spvA 184 2.08e+01 c.50.1.2 98957 1wkbA 810 2.10e+01 1c24A 263 2.13e+01 1c24A d.127.1.1 41148 1tf9A 284 2.18e+01 1j1iA 296 2.24e+01 c.69.1.10 83977 2etvA 346 2.32e+01 1dpgA 485 2.33e+01 1dpgA c.2.1.3,d.81.1.5 30074,39989 2fliA 220 2.39e+01 1ni9A 338 2.44e+01 e.7.1.2 85739 1yqeA 282 2.45e+01 1qq9A 284 2.48e+01 1xjo c.56.5.4 33841 1c4oA 664 2.51e+01 1d2mA c.37.1.19,c.37.1.19 32415,32416 2b3hA 329 2.52e+01 1d5rA 324 2.59e+01 1d5rA b.7.1.1,c.45.1.1 23181,32697 1bh9B 89 2.59e+01 1bh9B a.22.1.3 16485 1ve1A 304 2.77e+01 1ym3A 215 2.80e+01 2d69A 430 2.87e+01 1v71A 323 2.92e+01 1ky3A 182 3.01e+01 c.37.1.8 73193 2cwxA 430 3.04e+01 2fh7A 595 3.05e+01 2bvfA 459 3.16e+01 1wy2A 351 3.20e+01 1za0A 275 3.20e+01 1kz1A 159 3.24e+01 c.16.1.1 73318 1x88A 359 3.26e+01 1ag9A 175 3.28e+01 1rcf c.23.5.1 31178 1qr6A 584 3.35e+01 1qr6A c.2.1.7,c.58.1.3 30293,33941 1nw1A 429 3.49e+01 d.144.1.8 86286 1vdeA 454 3.53e+01 1vdeA b.86.1.2,d.95.2.2,d.95.2.2 28378,40581,40582 1zjcA 418 3.57e+01 1iatA 557 3.61e+01 1dqrA c.80.1.2 62123 1jqnA 883 3.64e+01 c.1.12.3 77159 2ac5A 316 3.79e+01 1gjwA 637 3.82e+01 b.71.1.1,c.1.8.1 60582,60583 1mp8A 281 3.85e+01 d.144.1.7 91384 1o0sA 605 3.85e+01 c.2.1.7,c.58.1.3 86540,86541 1l2tA 235 3.86e+01 c.37.1.12 73514 1ihp 438 3.97e+01 1ihp c.60.1.2 33993 1ijbA 202 3.98e+01 c.62.1.1 71229 1g7fA 298 4.00e+01 1pty c.45.1.2 60330 1sqiA 393 4.04e+01 d.32.1.3,d.32.1.3 105914,105915 1ywnA 316 4.07e+01 1v2bA 177 4.07e+01 d.107.1.2 108279 1fgs 428 4.07e+01 1fgs c.59.1.2,c.72.2.2 33959,34962 1m0wA 491 4.14e+01 c.30.1.4,d.142.1.6 78363,78364 1pvvA 315 4.17e+01 c.78.1.1,c.78.1.1 95190,95191 1t2dA 322 4.18e+01 c.2.1.5,d.162.1.1 99084,99085 1d2mA 665 4.20e+01 1d2mA c.37.1.19,c.37.1.19 32417,32418 1xaoA 121 4.21e+01 1qc5A 192 4.31e+01 1aoxA c.62.1.1 34147 1yb2A 275 4.36e+01 2a6hC 1119 4.44e+01 1uuyA 167 4.45e+01 c.57.1.1 108059 1ptvA 321 4.53e+01 1pty c.45.1.2 32665 1ho1A 242 4.62e+01 1ho1A c.1.24.1 61097 1yz4A 160 4.66e+01 1r3dA 264 4.85e+01 1pt6A 213 4.92e+01 c.62.1.1 95091 1bs0A 384 4.97e+01 1bs0A c.67.1.4 34490 1fgkA 310 5.04e+01 1fgkA d.144.1.7 41693 1dkqA 410 5.07e+01 1dklA c.60.1.2 33998 1oglA 283 5.15e+01 a.204.1.1 92922 1e5dA 402 5.17e+01 1e5dA c.23.5.1,d.157.1.3 31208,42061 1wu7A 434 5.17e+01 1t5hX 504 5.18e+01 e.23.1.1 106449 1ojrA 274 5.19e+01 c.74.1.1 93147 1oltA 457 5.22e+01 c.1.28.2 93334 2a3qA 170 5.24e+01 1c3hA 137 5.24e+01 b.22.1.1 90405 1dq3A 454 5.24e+01 1dq3A b.86.1.2,d.50.3.1,d.95.2.2,d.95.2.2 28380,38798,40585,40586 2eueA 279 5.27e+01 1hynP 379 5.30e+01 1hynP d.112.1.2 61408 1fnsA 196 5.33e+01 1auq c.62.1.1 34136 1t3lA 337 5.36e+01 b.34.2.1,c.37.1.1 106358,106359 2a5vA 213 5.43e+01 1n0wA 243 5.52e+01 c.37.1.11 79772 2exrA 524 5.64e+01 1xmaA 145 5.70e+01 1sznA 417 5.71e+01 b.71.1.1,c.1.8.1 106162,106163 1kutA 230 5.72e+01 d.143.1.1 73017 1oxwA 373 5.76e+01 c.19.1.3 87539 1n91A 108 5.78e+01 d.206.1.1 80326 1k1xA 659 5.81e+01 a.8.3.2,b.30.5.8,c.6.2.2 84279,84280,84281 1omrA 201 5.81e+01 a.39.1.5 93349 1fqtA 112 5.90e+01 1fqtA b.33.1.1 24441 2gf9A 189 5.95e+01 1wy1A 172 5.97e+01 1l2lA 457 6.04e+01 c.72.1.3 77656 2f71A 298 6.04e+01 1mh1 186 6.11e+01 1eesA c.37.1.8 32002 1o20A 427 6.13e+01 c.82.1.1 86556 1kyqA 274 6.18e+01 c.2.1.11,e.37.1.1 73281,73282 1w79A 489 6.20e+01 1xocA 520 6.25e+01 1y1nA 291 6.25e+01 2avyC 232 6.35e+01 1m7bA 184 6.46e+01 c.37.1.8 74572 1uu1A 335 6.55e+01 c.67.1.1 99993 1o7fA 469 6.61e+01 a.4.5.31,b.82.3.2,b.82.3.2 81131,81132,81133 2fb1A 226 6.70e+01 2fcr 173 6.92e+01 1rcf c.23.5.1 31151 1f4pA 147 6.93e+01 5nul c.23.5.1 59651 1howA 373 6.94e+01 1hcl d.144.1.7 41679 1o0xA 262 6.94e+01 d.127.1.1 80755 1phk 298 6.99e+01 1cdkA d.144.1.7 41635 1uxjA 309 7.00e+01 c.2.1.5,d.162.1.1 108112,108113 1ur5A 309 7.02e+01 c.2.1.5,d.162.1.1 99807,99808 1nv8A 284 7.16e+01 c.66.1.30 86224 1lnsA 763 7.18e+01 a.40.2.1,b.18.1.13,c.69.1.21 78101,78102,78103 1u0fA 564 7.21e+01 1ez0A 510 7.24e+01 1eyyA c.82.1.1 35385 2aexA 346 7.26e+01 1nznA 126 7.35e+01 a.118.8.1 92382 1nm2A 317 7.38e+01 c.19.1.1,d.58.23.1 80654,80655 1wl8A 189 7.56e+01 1f6bA 198 7.63e+01 c.37.1.8 64986 1m5wA 243 7.65e+01 c.1.24.1 84836 1q1gA 276 7.69e+01 c.56.2.1 95574 1vg8A 207 7.70e+01 c.37.1.8 108606 2fflA 756 7.73e+01 1pbgA 468 7.73e+01 1e70M c.1.8.4 28946 1vhwA 253 7.76e+01 c.56.2.1 100706 1v37A 177 7.80e+01 1adjA 421 7.84e+01 1adjA c.51.1.1,d.104.1.1 33188,40737 1jjtA 228 7.90e+01 1a7tA d.157.1.1 63139 1pu1A 94 7.95e+01 d.266.1.1 104307 1vhrA 184 7.97e+01 1vhrA c.45.1.1 32651 1vqzA 341 8.01e+01 1a41 234 8.03e+01 1a41 d.163.1.2 42174 1kz7A 353 8.05e+01 a.87.1.1,b.55.1.1 73333,73334 1t8sA 484 8.08e+01 c.56.2.1 106679 1h4lD 147 8.17e+01 a.74.1.1 70873 1v7pC 200 8.21e+01 c.62.1.1 108408 1svdA 473 8.32e+01 1ykwA 435 8.46e+01 1g7oA 215 8.48e+01 1g7oA a.45.1.1,c.47.1.5 60332,60333 1vjuA 309 8.49e+01 d.248.1.1 100835 1tikA 213 8.49e+01 c.23.5.3 107003 2amyA 246 8.56e+01 1vphA 149 8.66e+01 1kl7A 514 8.71e+01 c.79.1.1 72678 1vpi 122 8.74e+01 1poa a.133.1.2 19559 1dkmA 410 8.86e+01 1dklA c.60.1.2 34000 1hq3D 103 8.87e+01 1aoiB a.22.1.1 16464 1tzyD 103 8.87e+01 a.22.1.1 107533 1bob 320 8.87e+01 1bob d.108.1.1 40816 1zcbA 362 8.96e+01 1vbiA 344 8.99e+01