# List of top-scoring protein chains for t04-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1lam 484 1.34e-86 1lam c.50.1.1,c.56.5.3 33166,33829 1v71A 323 4.59e-03 1tkjA 284 5.06e-03 1tf9A 284 5.75e-03 1xjo 284 1.23e-02 1xjo c.56.5.4 33843 1qq9A 284 2.43e-02 1xjo c.56.5.4 33841 1rtqA 299 9.71e-02 c.56.5.4 97819 1lokA 291 9.79e-02 c.56.5.4 78122 2anpA 291 1.02e-01 1amp 291 1.91e-01 1amp c.56.5.4 33837 2fuqA 747 9.94e-01 1w7bA 339 1.07e+00 2av4A 162 1.16e+00 1ve5A 311 1.17e+00 1ysjA 404 1.22e+00 1pv9A 348 1.74e+00 c.55.2.1,d.127.1.1 95157,95158 1izmA 184 2.54e+00 a.199.1.1 90725 1xd8A 289 2.87e+00 1vqzA 341 3.00e+00 1th0A 226 3.07e+00 d.3.1.7 106903 1x13A 401 3.21e+00 1mjhA 162 3.40e+00 1mjhA c.26.2.4 31639 1ixcA 294 3.67e+00 a.4.5.37,c.94.1.1 83764,83765 1cg2A 393 4.37e+00 1cg2A c.56.5.4,d.58.19.1 33844,39360 1gc0A 398 5.14e+00 c.67.1.3 70168 2f06A 144 5.18e+00 1fc4A 401 5.23e+00 1bs0A c.67.1.4 59760 2bzpA 226 6.25e+00 1g8fA 511 6.36e+00 1g8fA b.122.1.3,c.26.1.5,c.37.1.15 60348,60349,60350 1u9yA 284 6.74e+00 1pn0A 665 6.94e+00 c.3.1.2,c.47.1.10,d.16.1.2 94918,94919,94920 1ta0A 197 7.17e+00 c.108.1.16 106729 1tm9A 137 7.29e+00 a.225.1.1 107150 1qgvA 142 7.54e+00 1qgvA c.47.1.8 33056 2a6aA 218 8.38e+00 3tdt 274 8.92e+00 3tdt b.81.1.2 28053 1ve1A 304 9.05e+00 1cb0A 283 9.08e+00 1cb0A c.56.2.1 33790 1z0sA 278 9.48e+00 1a8h 500 9.49e+00 1a8h a.27.1.1,c.26.1.1 16922,31589 1fohA 664 9.59e+00 1fohA c.3.1.2,c.47.1.10,d.16.1.2 30381,33078,37900 1ka2A 499 9.82e+00 d.92.1.5 77305 1jksA 294 9.94e+00 d.144.1.7 71710 1e5eA 404 1.00e+01 1ibjA c.67.1.3 59265 1tvjA 166 1.02e+01 1i60A 278 1.04e+01 c.1.15.4 71118 1suwA 249 1.05e+01 e.52.1.1 106027 1jr7A 311 1.11e+01 b.82.2.3 63255 1wl8A 189 1.11e+01 2avdA 219 1.12e+01 1tzbA 302 1.12e+01 c.80.1.1 107470 1vl4A 447 1.16e+01 d.283.1.1 108718 1t0hB 224 1.40e+01 c.37.1.1 106208 1woyA 500 1.42e+01 1cp2A 269 1.47e+01 1cp2A c.37.1.10 32269 1p4fA 293 1.52e+01 d.144.1.7 104063 1wc3A 219 1.57e+01 1tdtA 259 1.58e+01 3tdt b.81.1.2 28055 1li4A 432 1.74e+01 c.2.1.4,c.23.12.3 84616,84617 1vljA 407 1.77e+01 e.22.1.2 108832 1mh1 186 1.79e+01 1eesA c.37.1.8 32002 1x9iA 302 1.86e+01 1wy2A 351 1.88e+01 1wznA 252 1.89e+01 1c24A 263 1.91e+01 1c24A d.127.1.1 41148 1y9kA 157 2.03e+01 1j7gA 144 2.08e+01 c.110.1.1 84130 2g0dA 409 2.09e+01 1mc0A 368 2.16e+01 d.110.2.1,d.110.2.1 78937,78938 1d1vA 444 2.19e+01 1nseA d.174.1.1 59101 1qs0A 407 2.21e+01 1qs0A c.36.1.11 31829 1o97D 320 2.25e+01 c.26.2.3,c.31.1.2 81233,81234 1zosA 230 2.30e+01 1gg3A 279 2.43e+01 1ef1A a.11.2.1,b.55.1.5,d.15.1.4 16372,27007,37615 1dxy 333 2.44e+01 1dxy c.2.1.4,c.23.12.1 30094,31354 1u6zA 513 2.56e+01 2cy7A 396 2.61e+01 2c2aA 258 2.65e+01 1qbkB 890 2.74e+01 1qbkB a.118.1.1 19127 1ed5A 444 2.81e+01 1nseA d.174.1.1 42530 1cvl 319 2.86e+01 1cvl c.69.1.18 34786 1z57A 339 2.87e+01 5csmA 256 3.05e+01 5csmA a.130.1.2 19494 1zupA 315 3.20e+01 1jwiA 131 3.20e+01 d.169.1.1 67383 1tl9A 339 3.22e+01 1pwhA 327 3.22e+01 c.79.1.1 95224 1ispA 181 3.26e+01 c.69.1.18 76778 1scfA 273 3.28e+01 1exzA a.26.1.2 16873 1h1yA 228 3.44e+01 c.1.2.2 76506 1xwwA 157 3.56e+01 1gjwA 637 3.56e+01 b.71.1.1,c.1.8.1 60582,60583 2fvtA 135 3.57e+01 1kutA 230 3.59e+01 d.143.1.1 73017 1dceB 331 3.63e+01 1dceB a.102.4.3 18872 1srvA 145 3.63e+01 1derA c.8.5.1 30817 2b0oE 301 3.67e+01 1rtxA 123 3.71e+01 a.1.1.1 97827 1iuhA 198 3.72e+01 d.61.1.2 83711 1ja1A 622 3.75e+01 1amoA b.43.4.1,c.23.5.2,c.25.1.4 62803,62804,62805 1r5iD 216 3.92e+01 a.202.1.1 97091 1z7wA 322 3.95e+01 1zczA 464 3.95e+01 1iznA 286 4.12e+01 e.43.1.1 83847 2b99A 156 4.14e+01 1i6wA 181 4.15e+01 1i6wA c.69.1.18 61859 2a35A 215 4.19e+01 1l1eA 287 4.26e+01 c.66.1.18 73454 1z5nA 242 4.28e+01 1bn7A 294 4.32e+01 1bn6A c.69.1.8 34677 1fg7A 356 4.41e+01 1gewA c.67.1.1 59819 1axn 323 4.44e+01 1avc a.65.1.1 18149 1oz7A 131 4.45e+01 d.169.1.1 93806 2awfA 172 4.49e+01 1wnfA 328 4.53e+01 1w61A 414 4.53e+01 1z7yA 322 4.55e+01 1uayA 242 4.58e+01 c.2.1.2 88390 1thg 544 4.58e+01 1thg c.69.1.17 34763 1hd7A 318 4.59e+01 1bix d.151.1.1 41780 1d0cA 444 4.64e+01 d.174.1.1 64769 1z5oA 242 4.65e+01 1mq4A 272 4.67e+01 d.144.1.7 91391 1fmcA 255 4.68e+01 1cydA c.2.1.2 29856 1el5A 389 4.69e+01 1b3mA c.3.1.2,d.16.1.3 30369,37937 1b9mA 265 4.70e+01 1b9mA a.4.5.8,b.40.6.2,b.40.6.2 16118,58938,58939 1zbfA 142 4.71e+01 1mp8A 281 4.75e+01 d.144.1.7 91384 2b2aA 199 4.75e+01 1yasA 257 4.77e+01 1qj4A c.69.1.20 34801 1efm 393 4.89e+01 1efcA c.37.1.8 64732 1qj4A 257 4.95e+01 1qj4A c.69.1.20 34796 1ivnA 190 5.05e+01 c.23.10.5 83719 1fcdA 401 5.10e+01 1fcdA c.3.1.5,c.3.1.5,d.87.1.1 30593,30594,40218 1oe8A 211 5.12e+01 a.45.1.1,c.47.1.5 86905,86906 1rfmA 344 5.22e+01 c.122.1.1 97385 2ajrA 331 5.25e+01 1j8fA 323 5.25e+01 1j8fA c.31.1.5 62738 1vhxA 150 5.28e+01 c.55.3.8 100712 1ys1X 320 5.33e+01 1wlsA 328 5.37e+01 2fvgA 340 5.38e+01 1wbpA 397 5.39e+01 1gy8A 397 5.43e+01 c.2.1.2 83376 1yvkA 163 5.43e+01 1elvA 333 5.48e+01 5ptp b.47.1.2,g.18.1.1 59454,59455 1aoa 275 5.53e+01 1aoa a.40.1.1,a.40.1.1 17396,17397 1tlfA 301 5.54e+01 1tlfA c.93.1.1 35687 1vj5A 555 5.59e+01 c.108.1.2,c.69.1.11 100799,100800 1yd9A 193 5.64e+01 1v1pA 211 5.64e+01 b.40.2.2,d.15.6.1 108268,108269 1xklA 273 5.71e+01 1ash 150 5.78e+01 1ash a.1.1.2 15622 1fs0E 138 5.84e+01 1aqt a.2.10.1,b.93.1.1 59997,59998 1o82A 70 5.84e+01 a.64.2.1 92630 1p99A 295 5.84e+01 c.94.1.1 94384 1mmvB 419 5.94e+01 d.174.1.1 91318 2frnA 278 5.97e+01 2fliA 220 5.99e+01 1ornA 226 6.12e+01 a.96.1.1 87342 1qxyA 252 6.23e+01 d.127.1.1 96565 1r89A 437 6.36e+01 a.160.1.3,d.218.1.7,d.58.16.2 97221,97222,97223 1gefA 123 6.39e+01 1gefA c.52.1.18 60465 2c3mA 1231 6.48e+01 1zd3A 555 6.61e+01 2f1fA 164 6.66e+01 2d42A 249 6.70e+01 1j4aA 333 6.86e+01 c.2.1.4,c.23.12.1 71502,71503 1kekA 1231 6.90e+01 c.36.1.8,c.36.1.12,c.48.1.3,c.64.1.1,d.58.1.5 68524,68525,68526,68527,68528 1mk4A 157 6.95e+01 d.108.1.1 84979 1xhkA 187 6.96e+01 1qlwA 328 6.96e+01 1qlwA c.69.1.15 34722 1wf3A 301 7.02e+01 2cw8A 537 7.04e+01 1p32A 209 7.04e+01 1p32A d.25.1.1 38379 1fl0A 171 7.32e+01 1eujA b.40.4.4 25315 1jysA 242 7.35e+01 c.56.2.1 77216 1vqoH 171 7.36e+01 1w2yA 229 7.41e+01 a.204.1.1 109140 1xnzA 264 7.49e+01 2f4mA 295 7.51e+01 1tz9A 367 7.57e+01 c.1.15.6 107466 1gx4A 289 7.64e+01 c.68.1.9 83362 1rgzA 363 7.69e+01 e.3.1.1 97457 1o0xA 262 7.75e+01 d.127.1.1 80755 1qzgA 187 7.75e+01 b.40.4.3 96643 1tffA 234 7.86e+01 d.3.1.11 106854 1cqxA 403 8.01e+01 1cqxA a.1.1.2,b.43.4.2,c.25.1.5 15635,25667,31562 1m4lA 307 8.06e+01 c.56.5.1 78604 1b0pA 1231 8.16e+01 c.36.1.8,c.36.1.12,c.48.1.3,c.64.1.1,d.58.1.5 31831,31832,33104,34157,39003 1sxjE 354 8.23e+01 a.80.1.1,c.37.1.20 106089,106090 1yioA 208 8.24e+01 1hziA 129 8.25e+01 1rcb a.26.1.2 61449 1r71A 178 8.26e+01 a.4.14.1 104823 1y13A 181 8.29e+01 1swxA 209 8.38e+01 a.224.1.1 106075 1wbeA 209 8.38e+01 1h70A 255 8.46e+01 1h70A d.126.1.3 60711 1jx6A 342 8.51e+01 c.93.1.1 67406 1kqqA 139 8.51e+01 a.4.3.1 72885 2atxA 194 8.52e+01 1m7yA 435 8.61e+01 c.67.1.4 78761 2ctc 307 8.65e+01 1aye c.56.5.1 33802 1t3lA 337 8.70e+01 b.34.2.1,c.37.1.1 106358,106359 1dtdA 303 8.90e+01 1aye c.56.5.1 33823 1nnlA 225 8.91e+01 c.108.1.4 85906 1i7dA 659 8.94e+01 1d6mA e.10.1.1 61886 1dg9A 157 8.94e+01 1dg9A c.44.1.1 32637 1bjnA 360 8.94e+01 1bjnA c.67.1.4 34469 1v0wA 506 8.95e+01 d.136.1.2,d.136.1.2 108220,108221