Best Alignments for T0318

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
1kmqA/T0318-1kmqA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1kmqA/T0318-1kmqA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.2436e+013.63e-03 c.37.1.8
1tqyB/T0318-1tqyB-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1tqyB/T0318-1tqyB-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.1035e+011.25e-05 c.95.1.1
c.95.1.1
1se0A/T0318-1se0A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1se0A/T0318-1se0A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.1379e+012.52e-03 g.52.1.1
1kmvA/T0318-1kmvA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1kmvA/T0318-1kmvA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.4296e+013.34e-05 c.71.1.1
2b3yA/T0318-2b3yA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2b3yA/T0318-2b3yA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.7949e+012.25e-02
1tc1A/T0318-1tc1A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1tc1A/T0318-1tc1A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.9636e+011.38e-04 1tc1A c.61.1.1
1nox/T0318-1nox-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1nox/T0318-1nox-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.3394e+017.85e-03 1nox d.90.1.1
1b1cA/T0318-1b1cA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1b1cA/T0318-1b1cA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.5987e+015.83e-05 1amoA c.23.5.2
1ywmA/T0318-1ywmA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1ywmA/T0318-1ywmA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.8423e+019.20e-03
1aqcA/T0318-1aqcA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1aqcA/T0318-1aqcA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.8919e+014.85e+01 1x11A b.55.1.2

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001