# List of top-scoring protein chains for t2k-100-30-dssp-ebghstl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1k87A 669 5.62e-01 a.176.1.1,c.1.23.2 77286,77287 1r5rA 119 7.67e-01 a.39.2.1 97104 1w34A 304 1.01e+00 2bsaA 303 1.05e+00 1ogiA 303 1.06e+00 b.43.4.2,c.25.1.1 92914,92915 1que 303 1.11e+00 1fnc b.43.4.2,c.25.1.1 25647,31537 1qh0A 295 1.15e+00 b.43.4.2,c.25.1.1 68891,68892 1b2rA 304 1.17e+00 1fnc b.43.4.2,c.25.1.1 25648,31538 1nxiA 132 1.22e+00 d.58.47.1 86381 1go2A 304 1.23e+00 b.43.4.2,c.25.1.1 76243,76244 2b5oA 402 1.74e+00 1ck7A 631 2.17e+00 1ck7A b.66.1.1,g.14.1.2,g.14.1.2,g.14.1.2,a.20.1.2,d.92.1.11 27538,44674,44675,44676,58969,58970 1dfaA 454 2.23e+00 1vdeA b.86.1.2,d.95.2.2,d.95.2.2 28375,40575,40576 1yyaA 250 2.57e+00 1aoxA 203 2.91e+00 1aoxA c.62.1.1 34151 1icrA 217 3.03e+00 1vfrA d.90.1.1 62274 1ykiA 217 3.12e+00 1a8p 258 3.32e+00 1fdr b.43.4.2,c.25.1.1 25654,31544 1elqA 390 3.71e+00 1elqA c.67.1.3 34436 1eluB 390 3.71e+00 1elqA c.67.1.3 34435 1eluA 390 3.73e+00 1elqA c.67.1.3 34434 1kmqA 184 4.79e+00 c.37.1.8 84412 2f1fA 164 4.80e+00 1v37A 177 5.02e+00 1jb9A 316 5.13e+00 1fnc b.43.4.2,c.25.1.1 62840,62841 2c2hA 192 5.23e+00 1bx1A 314 5.37e+00 1fnc b.43.4.2,c.25.1.1 25629,31519 1zwwA 256 5.47e+00 1fnc 314 5.53e+00 1fnc b.43.4.2,c.25.1.1 25627,31517 1tx4B 178 5.78e+00 1ctqA c.37.1.8 32045 1jkmB 361 5.80e+00 1jkmA c.69.1.2 34634 1ztpA 251 5.88e+00 1fnb 314 5.90e+00 1fnc b.43.4.2,c.25.1.1 25628,31518 1fnd 314 6.01e+00 1fnc b.43.4.2,c.25.1.1 25626,31516 1necA 216 7.45e+00 1vfrA d.90.1.1 40249 1x11A 172 8.46e+00 1x11A b.55.1.2 26985 1gtdA 85 8.85e+00 d.284.1.1 76344 1v7pC 200 1.03e+01 c.62.1.1 108408 1j5sA 463 1.04e+01 c.1.9.8 71580 1ee8A 266 1.04e+01 1ee8A a.156.1.2,b.113.1.1,g.39.1.8 75823,75824,75825 1qgrA 876 1.04e+01 1qgrA a.118.1.1 19119 1bsmA 201 1.11e+01 1avmA a.2.11.1,d.44.1.1 15780,38743 1qg0A 308 1.12e+01 1fnc b.43.4.2,c.25.1.1 25639,31529 2fbhA 146 1.16e+01 1o5hA 214 1.17e+01 a.191.1.1 92497 1v8gA 329 1.18e+01 a.46.2.1,c.27.1.1 100505,100506 1kvkA 395 1.20e+01 d.14.1.5,d.58.26.3 73060,73061 1qd1A 325 1.21e+01 1qd1A d.58.34.1,d.58.34.1 39493,39494 1avmA 201 1.21e+01 1avmA a.2.11.1,d.44.1.1 15782,38745 1vk8A 106 1.24e+01 d.58.48.1 108636 1i0lA 221 1.35e+01 c.61.1.1 71096 1ibrB 462 1.41e+01 1qgrA a.118.1.1 19120 1ewkA 490 1.44e+01 1ewkA c.93.1.1 35712 1q8iA 783 1.84e+01 c.55.3.5,e.8.1.1 96208,96209 1as0 353 2.00e+01 1cipA a.66.1.1,c.37.1.8 18212,32095 1ig0A 319 2.02e+01 1ig0A b.82.6.1,c.100.1.1 62354,62355 1mbxC 106 2.21e+01 d.45.1.2 78929 1tc1A 220 2.30e+01 1tc1A c.61.1.1 34083 1xxsA 122 2.34e+01 1aokA 122 2.44e+01 1poa a.133.1.2 19560 1e9lA 377 2.47e+01 1e9lA c.1.8.5,d.26.3.1 59395,59396 1jkmA 358 2.51e+01 1jkmA c.69.1.2 34633 1u8zA 168 2.55e+01 1zd9A 188 2.55e+01 1lfpA 249 2.58e+01 e.39.1.1 73885 1vdeA 454 2.59e+01 1vdeA b.86.1.2,d.95.2.2,d.95.2.2 28378,40581,40582 1t6nA 220 2.60e+01 c.37.1.19 106576 1vpi 122 2.60e+01 1poa a.133.1.2 19559 1fgkA 310 2.64e+01 1fgkA d.144.1.7 41693 1y4lA 121 2.67e+01 1a4rA 191 2.70e+01 1ctqA c.37.1.8 32063 1aqjA 421 2.74e+01 2admA c.66.1.27 34242 1uj2A 252 2.76e+01 c.37.1.6 99452 1aqcA 172 2.85e+01 1x11A b.55.1.2 26983 1jltA 122 2.87e+01 a.133.1.2 66867 1xahA 354 2.89e+01 2admA 421 2.96e+01 2admA c.66.1.27 34238 1khoA 370 3.12e+01 a.124.1.1,b.12.1.3 72489,72490 1rm4A 337 3.19e+01 c.2.1.3,d.81.1.1 105000,105001 1hkkA 364 3.21e+01 c.1.8.5,d.26.3.1 90634,90635 1jztA 246 3.26e+01 c.104.1.1 63319 1svsA 353 3.32e+01 c.37.1.8 106051 1r6oC 106 3.38e+01 1v7nV 163 3.48e+01 a.26.1.2 100476 2bl0C 142 3.50e+01 1hfc 169 3.50e+01 1hfc d.92.1.11 40335 1vf8A 377 3.65e+01 1jvpP 298 3.65e+01 d.144.1.7 67371 1w2fA 276 3.71e+01 d.143.1.3 109125 2a9kA 187 3.74e+01 1yb5A 351 3.77e+01 5eau 548 3.94e+01 5eat a.102.4.1,a.128.1.3 18851,19443 1cipA 353 4.00e+01 1cipA a.66.1.1,c.37.1.8 18210,32093 1v71A 323 4.01e+01 1my6A 199 4.05e+01 a.2.11.1,d.44.1.1 85232,85233 2avyM 117 4.18e+01 1mh1 186 4.19e+01 1eesA c.37.1.8 32002 1azsC 388 4.29e+01 1cipA a.66.1.1,c.37.1.8 18203,32086 1idsA 207 4.34e+01 1avmA a.2.11.1,d.44.1.1 15722,38730 1e1xA 299 4.39e+01 1hcl d.144.1.7 59157 1a1s 314 4.42e+01 1othA c.78.1.1,c.78.1.1 35258,35259 1lkyA 77 4.47e+01 a.60.1.1 73985 1pvvA 315 4.60e+01 c.78.1.1,c.78.1.1 95190,95191 1gz8A 299 4.62e+01 d.144.1.7 83405 1m0wA 491 4.77e+01 c.30.1.4,d.142.1.6 78363,78364 1zelA 298 4.80e+01 1nf3A 195 4.86e+01 c.37.1.8 85594 1ywmA 200 4.89e+01 1e9rA 437 4.92e+01 c.37.1.11 64827 1an0A 190 4.94e+01 1ctqA c.37.1.8 32066 1yc5A 246 4.98e+01 5eat 548 5.05e+01 5eat a.102.4.1,a.128.1.3 18853,19445 1ddeA 338 5.20e+01 1dd9A e.13.1.1 43255 1sgvA 316 5.28e+01 b.122.1.1,d.265.1.2 98858,98859 1j2zA 270 5.36e+01 b.81.1.1 90805 1wv9A 94 5.43e+01 1xrjA 261 5.51e+01 2ae6A 166 5.51e+01 2gjlA 328 5.62e+01 1ytlA 174 5.70e+01 1hcl 298 5.75e+01 1hcl d.144.1.7 41593 1zlbA 122 5.77e+01 1a27 289 5.79e+01 1fds c.2.1.2 29839 1fztA 211 5.81e+01 1qhfA c.60.1.1 60158 1ji7A 89 5.90e+01 a.60.1.1 71682 1w25A 459 5.98e+01 1umvX 122 6.13e+01 a.133.1.2 99630 2fj6A 82 6.16e+01 1a85A 158 6.29e+01 1hfc d.92.1.11 40355 1i1hA 219 6.38e+01 1f2vA c.23.17.1 61530 1s7zA 117 6.58e+01 a.159.3.1 98715 1tqyB 415 6.60e+01 c.95.1.1,c.95.1.1 107247,107248 1fds 327 6.61e+01 1fds c.2.1.2 29838 1jb0D 138 6.69e+01 1jb0D d.187.1.1 62823 1qxyA 252 6.70e+01 d.127.1.1 96565 1bzsA 165 6.71e+01 1hfc d.92.1.11 40348 1mc2A 122 6.81e+01 a.133.1.2 74622 1i5rA 327 7.04e+01 c.2.1.2 83668 1jtvA 327 7.09e+01 c.2.1.2 84230 1fdt 327 7.15e+01 1fds c.2.1.2 29841 1vljA 407 7.16e+01 e.22.1.2 108832 1i76A 163 7.21e+01 1hfc d.92.1.11 61877 2bfxA 284 7.27e+01 2fh7A 595 7.28e+01 2a7oA 112 7.38e+01 1y1xA 191 7.46e+01 2dkaA 544 7.50e+01 1vmiA 355 7.55e+01 1ecfA 504 7.61e+01 1ecfB c.61.1.1,d.153.1.1 34053,41820 2d00A 109 7.63e+01 1uarA 285 7.74e+01 c.46.1.2,c.46.1.2 107762,107763 1lqtA 456 7.79e+01 c.3.1.1,c.4.1.1 74198,74199 1twjA 84 7.80e+01 d.284.1.1 107407 1xjjA 644 7.83e+01 1vapA 123 7.84e+01 1poa a.133.1.2 19548 1f2vA 219 7.86e+01 1f2vA c.23.17.1 59627 1iqpA 327 7.95e+01 a.80.1.1,c.37.1.20 62649,62650 1ecfB 504 7.99e+01 1ecfB c.61.1.1,d.153.1.1 34054,41821 1ihgA 370 8.15e+01 2cpl a.118.8.1,b.62.1.1 62380,62381 1aokB 122 8.16e+01 1poa a.133.1.2 19561 1t4aA 84 8.21e+01 d.284.1.1 106404 1r3eA 309 8.23e+01 b.122.1.1,d.265.1.2 96907,96908 1e1dA 553 8.25e+01 1e1dA e.26.1.1 43363 1gntA 553 8.37e+01 e.26.1.1 70290 1c2pA 576 8.62e+01 1quvA e.8.1.4 43117 2br9A 234 8.65e+01 1eqnA 321 8.72e+01 1dd9A e.13.1.1 43256