# List of top-scoring protein chains for t06-100-30-str2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1kmqA 184 2.43e-01 c.37.1.8 84412 1vljA 407 1.97e+00 e.22.1.2 108832 1oaoC 729 1.99e+00 e.26.1.3 86746 1tqyB 415 3.32e+00 c.95.1.1,c.95.1.1 107247,107248 2bo9B 222 3.67e+00 1se0A 116 4.66e+00 g.52.1.1 98814 1tc1A 220 4.76e+00 1tc1A c.61.1.1 34083 2fsjA 346 5.03e+00 1womA 271 7.89e+00 1i0lA 221 8.06e+00 c.61.1.1 71096 1mp9A 198 8.73e+00 d.129.1.1,d.129.1.1 91385,91386 1g8sA 230 9.16e+00 c.66.1.3 90507 2fbhA 146 1.07e+01 1fs5A 266 1.08e+01 c.124.1.1 65044 1cdzA 96 1.08e+01 1cdzA c.15.1.1 30925 1qo0D 196 1.10e+01 1qo0D c.23.1.3 31125 1mh1 186 1.13e+01 1eesA c.37.1.8 32002 1zj6A 187 1.34e+01 1x8bA 289 1.34e+01 1ywmA 200 1.34e+01 1l1qA 186 1.48e+01 c.61.1.1 77653 1ru3A 732 1.59e+01 e.26.1.3 97835 1qnxA 209 1.66e+01 1qnxA d.111.1.1 40914 1ss4A 153 1.67e+01 d.32.1.6 105976 1zx5A 300 1.76e+01 1vj7A 393 1.78e+01 a.211.1.1,d.218.1.8 100801,100802 1x3lA 440 2.12e+01 1tadA 324 2.16e+01 1cipA a.66.1.1,c.37.1.8 18194,32077 1w0nA 131 2.17e+01 1lqtA 456 2.26e+01 c.3.1.1,c.4.1.1 74198,74199 1gx1A 160 2.28e+01 d.79.5.1 70675 2cw8A 537 2.40e+01 8dfr 189 2.51e+01 1aoeA c.71.1.1 34895 1i88A 389 2.52e+01 c.95.1.2,c.95.1.2 66070,66071 2av5A 120 2.58e+01 2ftrA 108 2.71e+01 1cvrA 435 2.80e+01 1cvrA b.1.18.12,c.17.1.2 21949,31006 2f1rA 171 2.82e+01 1m7bA 184 3.19e+01 c.37.1.8 74572 2cc0A 195 3.28e+01 1vk8A 106 3.30e+01 d.58.48.1 108636 1y51A 88 3.33e+01 2b3yA 888 3.35e+01 1qhdA 398 3.37e+01 1qhdA a.115.1.2,b.19.1.1 63324,63325 1xesA 413 3.37e+01 1v1aA 309 3.49e+01 c.72.1.1 100249 2b8nA 429 3.55e+01 1tu5A 746 3.58e+01 1xeaA 323 3.63e+01 c.2.1.3,d.81.1.5 109572,109573 1n0lA 224 3.64e+01 b.1.11.1,b.7.2.1 79744,79745 1kicA 339 3.73e+01 c.70.1.1 72510 1bvyF 191 3.77e+01 1bvyF c.23.5.1 31207 1no7A 604 3.81e+01 e.48.1.1 92016 1xtoA 311 3.98e+01 1zavA 180 3.98e+01 1x0pA 143 3.99e+01 1ye8A 178 4.15e+01 1uarA 285 4.26e+01 c.46.1.2,c.46.1.2 107762,107763 2a2kA 175 4.31e+01 1xfjA 261 4.32e+01 d.194.1.2 109585 1y8oB 128 4.32e+01 1a8y 367 4.39e+01 1a8y c.47.1.3,c.47.1.3,c.47.1.3 32781,32782,32783 1p0hA 318 4.41e+01 d.108.1.1 93866 1nf3A 195 4.50e+01 c.37.1.8 85594 2ex4A 241 4.59e+01 1vr5A 547 4.64e+01 1vdnA 162 4.72e+01 1z9bA 135 4.77e+01 1uteA 313 4.81e+01 1uteA d.159.1.1 42078 1yqdA 366 4.89e+01 1ytlA 174 4.90e+01 1lxjA 104 4.99e+01 d.58.48.1 84736 1amuA 563 5.42e+01 1amuA e.23.1.1 43351 1c3mA 147 5.49e+01 1jotA b.77.3.1 27983 2etgA 296 5.51e+01 1e8cA 498 5.58e+01 c.98.1.1,c.59.1.1,c.72.2.1 59377,59378,59379 1nrzA 164 5.71e+01 c.38.1.1 86131 2pia 321 5.84e+01 2pia b.43.4.2,c.25.1.2,d.15.4.2 25663,31553,37704 1sqiA 393 5.87e+01 d.32.1.3,d.32.1.3 105914,105915 1cby 259 6.13e+01 1cby d.103.1.1 40705 1m6dA 214 6.15e+01 d.3.1.1 84849 1nox 205 6.31e+01 1nox d.90.1.1 40242 1ryoA 327 6.35e+01 c.94.1.2 98108 1qkkA 155 6.37e+01 1dbwA c.23.1.1 31104 1hqz1 141 6.38e+01 1y7rA 133 6.42e+01 2g0qA 173 6.44e+01 1ofdA 1520 6.49e+01 b.80.4.1,c.1.4.1,d.153.1.1 86935,86936,86937 2bmoA 447 6.49e+01 1uuyA 167 6.52e+01 c.57.1.1 108059 1cznA 169 6.58e+01 1rcf c.23.5.1 31181 2bfwA 200 6.66e+01 1qy6A 274 6.71e+01 b.47.1.1 96574 1x7yB 342 6.80e+01 2bfdB 345 6.87e+01 1qfjA 232 6.93e+01 1qfjA b.43.4.2,c.25.1.1 25655,31545 2gmfA 127 6.94e+01 2gmfA a.26.1.2 16849 1t6nA 220 6.98e+01 c.37.1.19 106576 1y44A 320 7.05e+01 1y81A 138 7.06e+01 1uh5A 329 7.18e+01 c.2.1.2 107840 1v71A 323 7.36e+01 2bjvA 265 7.40e+01 1lhpA 312 7.48e+01 c.72.1.5 77960 1rzhL 281 7.71e+01 f.26.1.1 98164 1fmjA 351 7.72e+01 c.37.1.5 59879 1nbwA 607 7.79e+01 c.8.6.1,c.55.1.6,c.55.1.6 80393,80394,80395 1kaeA 434 7.95e+01 c.82.1.2 72247 1jy1A 464 8.08e+01 d.136.1.3,d.136.1.3 67438,67439 1dxeA 256 8.12e+01 1dxeA c.1.12.5 29310 2gw6A 123 8.16e+01 1shwB 181 8.19e+01 b.18.1.4 105563 1udzA 182 8.21e+01 b.51.1.1 99239 1oaoA 674 8.24e+01 e.26.1.2 86744 1v6tA 255 8.35e+01 1ydlA 79 8.44e+01 1vplA 256 8.55e+01 1sheA 103 8.72e+01 d.274.1.1 105551 1rtqA 299 8.73e+01 c.56.5.4 97819 1qvcA 145 8.73e+01 3ullA b.40.4.3 25284 1fp2A 352 8.75e+01 1fpxA a.4.5.29,c.66.1.12 59941,59942 1x0rA 249 8.81e+01 1nm8A 616 8.89e+01 c.43.1.3,c.43.1.3 85872,85873 1n0qA 93 8.90e+01 k.37.1.1 79754