# List of top-scoring protein chains for t06-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2bo9B 222 3.54e+00 1nox 205 7.85e+00 1nox d.90.1.1 40242 1oaoC 729 9.18e+00 e.26.1.3 86746 1aqcA 172 9.95e+00 1x11A b.55.1.2 26983 1vdnA 162 1.22e+01 1amuA 563 1.35e+01 1amuA e.23.1.1 43351 2g2cA 167 1.37e+01 1zj6A 187 1.38e+01 2b3yA 888 1.39e+01 1se0A 116 1.46e+01 g.52.1.1 98814 1mp9A 198 1.55e+01 d.129.1.1,d.129.1.1 91385,91386 1vk8A 106 1.56e+01 d.58.48.1 108636 1kmqA 184 1.76e+01 c.37.1.8 84412 1tqyB 415 1.76e+01 c.95.1.1,c.95.1.1 107247,107248 1cvrA 435 1.83e+01 1cvrA b.1.18.12,c.17.1.2 21949,31006 1vljA 407 1.97e+01 e.22.1.2 108832 1ye8A 178 2.03e+01 2cu5A 129 2.08e+01 2ftrA 108 2.09e+01 1qnxA 209 2.16e+01 1qnxA d.111.1.1 40914 1vbiA 344 2.62e+01 2gw6A 123 2.74e+01 1x7yB 342 2.80e+01 2bfdB 345 2.82e+01 1cdzA 96 2.87e+01 1cdzA c.15.1.1 30925 2gmfA 127 2.89e+01 2gmfA a.26.1.2 16849 1kmvA 186 2.99e+01 c.71.1.1 72757 2fbhA 146 3.01e+01 2cw8A 537 3.02e+01 1hkhA 279 3.08e+01 c.69.1.12 90628 1zx5A 300 3.17e+01 1x8bA 289 3.23e+01 2au5A 139 3.56e+01 1m7bA 184 3.58e+01 c.37.1.8 74572 1bvyF 191 3.60e+01 1bvyF c.23.5.1 31207 1yrtA 364 3.64e+01 1x0pA 143 3.69e+01 1i2kA 269 3.72e+01 e.17.1.1 90661 1tf1A 198 3.94e+01 d.110.2.2 106826 1le6A 123 3.99e+01 a.133.1.2 73862 1f60B 94 4.00e+01 1b64 d.58.12.1 39307 1tc1A 220 4.00e+01 1tc1A c.61.1.1 34083 1x3lA 440 4.23e+01 1mh1 186 4.28e+01 1eesA c.37.1.8 32002 1g8sA 230 4.31e+01 c.66.1.3 90507 1zsyA 357 4.36e+01 1uuyA 167 4.49e+01 c.57.1.1 108059 2f3yA 148 4.50e+01 2a2kA 175 4.53e+01 1wvfA 520 4.58e+01 1ez0A 510 4.67e+01 1eyyA c.82.1.1 35385 2c5aA 379 4.80e+01 1aisA 182 5.32e+01 1ytbA d.129.1.1,d.129.1.1 41288,41289 1xteA 154 5.33e+01 1ywmA 200 5.39e+01 451c 82 5.39e+01 451c a.3.1.1 15904 1lxjA 104 5.42e+01 d.58.48.1 84736 1kicA 339 5.46e+01 c.70.1.1 72510 1no7A 604 5.50e+01 e.48.1.1 92016 1ytlA 174 5.65e+01 1ymkA 175 5.68e+01 1afwA 393 5.79e+01 1afwA c.95.1.1,c.95.1.1 35900,35901 1uu3A 310 5.86e+01 d.144.1.7 99999 2av5A 120 6.21e+01 1lqtA 456 6.22e+01 c.3.1.1,c.4.1.1 74198,74199 1v1aA 309 6.28e+01 c.72.1.1 100249 1rzhL 281 6.31e+01 f.26.1.1 98164 1qhdA 398 6.40e+01 1qhdA a.115.1.2,b.19.1.1 63324,63325 1h7eA 245 6.68e+01 c.68.1.13 60717 1womA 271 6.71e+01 1ynfA 458 6.72e+01 2etgA 296 6.90e+01 2fsjA 346 7.03e+01 1wmdA 434 7.03e+01 b.18.1.20,c.41.1.1 109408,109409 1u6eA 335 7.08e+01 1gk8A 475 7.08e+01 c.1.14.1,d.58.9.1 65234,65235 1qvcA 145 7.20e+01 3ullA b.40.4.3 25284 1nswA 105 7.22e+01 c.47.1.1 92097 2cc0A 195 7.39e+01 2bmjA 178 7.56e+01 1i36A 264 7.64e+01 a.100.1.8,c.2.1.6 71108,71109 1d2zB 153 7.68e+01 1d2zB a.77.1.2 18439 1ve6A 582 7.74e+01 1l1qA 186 7.75e+01 c.61.1.1 77653 1xb2B 291 7.85e+01 1dxeA 256 8.01e+01 1dxeA c.1.12.5 29310 1vraB 215 8.10e+01 1eqfA 280 8.14e+01 1eqfA a.29.2.1,a.29.2.1 16972,16973 1vcc 77 8.20e+01 1vcc d.121.1.1 41092 1jkmB 361 8.27e+01 1jkmA c.69.1.2 34634 1ru3A 732 8.27e+01 e.26.1.3 97835 1rreA 200 8.38e+01 d.14.1.10 97791 1q6uA 245 8.49e+01 d.26.1.1 95998 1qfjA 232 8.52e+01 1qfjA b.43.4.2,c.25.1.1 25655,31545 1fnnA 389 8.54e+01 1fnnA a.4.5.11,c.37.1.20 16129,32426 2bemA 170 8.62e+01 1ddwA 120 8.72e+01 1evhA b.55.1.4 27001 1vioA 243 8.82e+01 d.265.1.3,d.66.1.5 100762,100763 1qo0D 196 8.84e+01 1qo0D c.23.1.3 31125 1zin 217 8.96e+01 1zin c.37.1.1,g.41.2.1 31915,45178 1hxrA 115 8.97e+01 1fwqA b.88.1.1 28392