# List of top-scoring protein chains for t06-100-30-dssp-ebghstl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1vljA 407 4.27e+00 e.22.1.2 108832 1se0A 116 5.20e+00 g.52.1.1 98814 1mp9A 198 6.31e+00 d.129.1.1,d.129.1.1 91385,91386 2bo9B 222 7.54e+00 1zj6A 187 7.88e+00 1tqyB 415 8.49e+00 c.95.1.1,c.95.1.1 107247,107248 2ftrA 108 8.79e+00 2fbhA 146 9.75e+00 1kmqA 184 1.02e+01 c.37.1.8 84412 1m7bA 184 1.09e+01 c.37.1.8 74572 1vk8A 106 1.09e+01 d.58.48.1 108636 1vdnA 162 1.14e+01 1cdzA 96 1.30e+01 1cdzA c.15.1.1 30925 1ywmA 200 1.39e+01 1aisA 182 1.57e+01 1ytbA d.129.1.1,d.129.1.1 41288,41289 1qnxA 209 1.59e+01 1qnxA d.111.1.1 40914 2b3yA 888 1.70e+01 1wvfA 520 1.75e+01 2a2kA 175 2.06e+01 1x3lA 440 2.08e+01 1zx5A 300 2.23e+01 1vhnA 318 2.31e+01 c.1.4.1 100693 1bvyF 191 2.37e+01 1bvyF c.23.5.1 31207 1x7yB 342 2.40e+01 2bfdB 345 2.42e+01 1cznA 169 2.64e+01 1rcf c.23.5.1 31181 1mh1 186 2.79e+01 1eesA c.37.1.8 32002 2cw8A 537 2.84e+01 1l1qA 186 2.89e+01 c.61.1.1 77653 1kicA 339 2.92e+01 c.70.1.1 72510 1oaoC 729 3.12e+01 e.26.1.3 86746 2gmfA 127 3.15e+01 2gmfA a.26.1.2 16849 1aqcA 172 3.27e+01 1x11A b.55.1.2 26983 1kmvA 186 3.27e+01 c.71.1.1 72757 2av5A 120 3.33e+01 1ye8A 178 3.35e+01 2g2cA 167 3.50e+01 1le6A 123 3.53e+01 a.133.1.2 73862 1g8sA 230 3.57e+01 c.66.1.3 90507 1z9bA 135 3.60e+01 1y8oB 128 3.72e+01 2d1eA 248 3.89e+01 1x8bA 289 3.91e+01 1zavA 180 3.98e+01 2c5aA 379 4.19e+01 451c 82 4.31e+01 451c a.3.1.1 15904 1jkmB 361 4.34e+01 1jkmA c.69.1.2 34634 1ru3A 732 4.41e+01 e.26.1.3 97835 2gw6A 123 4.45e+01 1m7sA 484 4.48e+01 e.5.1.1 74574 1qhdA 398 4.49e+01 1qhdA a.115.1.2,b.19.1.1 63324,63325 1y0hA 105 4.51e+01 1y51A 88 4.51e+01 1no7A 604 4.55e+01 e.48.1.1 92016 1dqpA 230 4.63e+01 1dqnA c.61.1.1 34069 1qo0D 196 4.89e+01 1qo0D c.23.1.3 31125 1tc1A 220 4.91e+01 1tc1A c.61.1.1 34083 1a8y 367 5.09e+01 1a8y c.47.1.3,c.47.1.3,c.47.1.3 32781,32782,32783 1zin 217 5.11e+01 1zin c.37.1.1,g.41.2.1 31915,45178 2ex4A 241 5.15e+01 1n0qA 93 5.22e+01 k.37.1.1 79754 1xfjA 261 5.28e+01 d.194.1.2 109585 1tu5A 746 5.29e+01 2bmoA 447 5.36e+01 1ymkA 175 5.43e+01 1h7eA 245 5.47e+01 c.68.1.13 60717 2cu5A 129 5.61e+01 2cc0A 195 5.71e+01 1usmA 80 5.71e+01 d.74.1.1 99876 1lqtA 456 5.80e+01 c.3.1.1,c.4.1.1 74198,74199 1nf3A 195 5.81e+01 c.37.1.8 85594 1qfjA 232 5.86e+01 1qfjA b.43.4.2,c.25.1.1 25655,31545 2f1rA 171 5.93e+01 1tf1A 198 6.00e+01 d.110.2.2 106826 2fsjA 346 6.04e+01 1em8A 147 6.05e+01 c.128.1.1 90457 1ytlA 174 6.06e+01 1x0pA 143 6.19e+01 1iwmA 186 6.21e+01 b.125.1.2 83758 1wmdA 434 6.30e+01 b.18.1.20,c.41.1.1 109408,109409 1b79A 119 6.42e+01 1b79A a.81.1.1 18451 1qy6A 274 6.46e+01 b.47.1.1 96574 2bcgY 206 6.59e+01 1v8aA 265 6.60e+01 c.72.1.2 100494 1nbwA 607 6.65e+01 c.8.6.1,c.55.1.6,c.55.1.6 80393,80394,80395 2d4pA 141 6.69e+01 1alu 186 6.75e+01 1alu a.26.1.1 16826 2pia 321 6.76e+01 2pia b.43.4.2,c.25.1.2,d.15.4.2 25663,31553,37704 1avqA 228 6.82e+01 1avqA c.52.1.13 33326 2g0qA 173 6.87e+01 1u6rA 380 7.02e+01 2f3yA 148 7.10e+01 1vplA 256 7.47e+01 2d00A 109 7.59e+01 1dywA 173 7.62e+01 2cpl b.62.1.1 27505 2etgA 296 7.65e+01 1qouA 181 7.75e+01 1qouA b.17.1.1 23707 2cfeA 162 7.78e+01 1mkmA 249 7.79e+01 a.4.5.33,d.110.2.2 79242,79243 1h4vB 421 7.80e+01 1adjA c.51.1.1,d.104.1.1 60624,60625 1m15A 357 7.92e+01 a.83.1.1,d.128.1.2 78368,78369 1zejA 293 7.96e+01 1i36A 264 7.97e+01 a.100.1.8,c.2.1.6 71108,71109 1i2kA 269 7.97e+01 e.17.1.1 90661 1udzA 182 8.17e+01 b.51.1.1 99239 1sy7A 715 8.26e+01 1xxlA 239 8.31e+01 1oaoA 674 8.39e+01 e.26.1.2 86744 1a2pA 110 8.51e+01 1b20A d.1.1.2 36140 1ez0A 510 8.57e+01 1eyyA c.82.1.1 35385 1jb9A 316 8.63e+01 1fnc b.43.4.2,c.25.1.1 62840,62841 2fflA 756 8.63e+01 1f60B 94 8.68e+01 1b64 d.58.12.1 39307 1womA 271 8.82e+01 1vbiA 344 8.82e+01 1v6tA 255 8.87e+01 1hxrA 115 8.87e+01 1fwqA b.88.1.1 28392 2fsqA 243 8.92e+01 1d2zB 153 8.96e+01 1d2zB a.77.1.2 18439