# List of top-scoring protein chains for t06-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1nox 205 1.04e+00 1nox d.90.1.1 40242 2ayuA 417 1.85e+00 2cy2A 174 3.64e+00 2au5A 139 4.21e+00 1y9wA 140 4.31e+00 1d8hA 311 4.52e+00 1d8iA d.63.1.1 39544 2bidA 197 5.39e+00 2bidA f.1.4.1 43398 2b3yA 888 5.58e+00 1h7eA 245 5.87e+00 c.68.1.13 60717 1ddwA 120 5.96e+00 1evhA b.55.1.4 27001 1aqcA 172 6.37e+00 1x11A b.55.1.2 26983 1p65A 73 6.98e+00 d.254.1.1 94156 1q2hA 69 7.13e+00 a.34.4.1 104498 1ozjA 144 7.17e+00 d.164.1.1 93846 1lvfA 110 7.95e+00 a.47.2.1 74280 1es9A 232 9.54e+00 1wab c.23.10.3 31340 2awiA 317 1.00e+01 1r5sA 132 1.12e+01 1q4uA 151 1.15e+01 d.38.1.5 95828 1wu9A 80 1.19e+01 1fna 93 1.24e+01 1fnf b.1.2.1 21971 1ynfA 458 1.28e+01 451c 82 1.35e+01 451c a.3.1.1 15904 1jv1A 505 1.41e+01 c.68.1.5 71892 1ywmA 200 1.42e+01 1f7cA 231 1.43e+01 1f7cA a.116.1.1 19107 1se0A 116 1.45e+01 g.52.1.1 98814 1s9kD 53 1.45e+01 2fs3A 282 1.53e+01 1d7mA 101 1.58e+01 1d7mA h.1.10.1 45628 1kqqA 139 1.63e+01 a.4.3.1 72885 2ch7A 309 1.64e+01 1jvr 137 1.69e+01 1jvr a.61.1.2 18132 1ekeA 230 1.75e+01 1ekeA c.55.3.1 33572 2fa8A 105 1.89e+01 1ecmA 109 1.90e+01 1ecmA a.130.1.1 19492 1txlA 215 1.97e+01 b.60.1.4 107429 2cqeA 98 2.00e+01 2aw4Z 70 2.03e+01 1gouA 116 2.18e+01 d.1.1.2 65429 2fmlA 273 2.22e+01 1b7yB 785 2.22e+01 1pysB a.6.1.1,a.6.1.1,b.40.4.4,d.58.13.1,d.104.1.1,d.138.1.1 16301,16302,25312,39311,40780,41456 1wy9A 147 2.24e+01 1k2eA 156 2.25e+01 d.113.1.1 72010 2gw6A 123 2.29e+01 1uz3A 102 2.37e+01 1a41 234 2.52e+01 1a41 d.163.1.2 42174 1s3sG 127 2.65e+01 d.15.1.2 98457 1uzxA 169 2.78e+01 d.20.1.2 100238 2a72A 146 2.80e+01 2ab5A 269 2.86e+01 2c1lA 358 2.87e+01 1lmiA 131 2.90e+01 b.1.19.1 78098 1m48A 133 3.14e+01 a.26.1.2 74443 1pzqA 60 3.23e+01 a.34.3.1 95466 3znf 30 3.26e+01 g.37.1.1 45049 1ux5A 411 3.32e+01 a.207.1.1 100144 1ko6A 187 3.58e+01 b.119.1.1 77471 1shwB 181 3.61e+01 b.18.1.4 105563 1knzA 164 3.64e+01 e.34.1.1 68709 1zj6A 187 3.70e+01 2bemA 170 4.12e+01 1kveB 77 4.15e+01 1kveB 1pxvA 183 4.17e+01 d.3.1.1 95301 1sr2A 116 4.20e+01 1vlaA 150 4.42e+01 d.227.1.2 108735 1oc0B 51 4.60e+01 g.64.1.1 86791 1u5tA 233 4.65e+01 a.4.5.54,a.4.5.54 107684,107685 1nznA 126 4.66e+01 a.118.8.1 92382 1vcc 77 4.83e+01 1vcc d.121.1.1 41092 2biqA 219 4.83e+01 1unqA 125 5.02e+01 b.55.1.1 107968 2cuaA 135 5.20e+01 2cuaA b.6.1.2 23039 1vk8A 106 5.44e+01 d.58.48.1 108636 1r5lA 262 5.47e+01 a.5.3.1,c.13.1.1 97099,97100 1oj5A 132 5.72e+01 d.110.3.8 93087 1qf9A 194 5.82e+01 1zin c.37.1.1 31848 1v2xA 194 5.93e+01 c.116.1.1 100274 2fhwA 24 5.97e+01 2b5eA 504 6.01e+01 1x6fA 88 6.07e+01 2bh1A 250 6.11e+01 1w8xP 117 6.14e+01 2freA 200 6.19e+01 1k8wA 327 6.23e+01 b.122.1.1,d.265.1.2 83094,90388 1pa1A 310 6.33e+01 c.45.1.2 94404 1j55A 95 6.63e+01 a.39.1.2 77078 2f3yA 148 6.77e+01 1y4hA 188 6.78e+01 1k6dA 220 6.79e+01 c.124.1.2 72082 1z9bA 135 6.80e+01 2bj0A 203 6.96e+01 2adzA 178 7.06e+01 2fbhA 146 7.22e+01 1fzqA 181 7.42e+01 1hurA c.37.1.8 32060 1t33A 224 7.46e+01 a.4.1.9,a.121.1.1 106295,106296 1vfrA 218 7.48e+01 1vfrA d.90.1.1 40247 1a64A 97 7.48e+01 1cdcA b.1.1.1 19750 1n7sD 66 7.50e+01 h.1.15.1 80274 1s1qA 145 7.62e+01 d.20.1.2 98351 1exrA 148 7.63e+01 1cll a.39.1.5 17299 1ugmA 125 7.72e+01 d.15.1.3 107827 2bnuA 203 7.86e+01 2d00A 109 7.99e+01 1o6zA 303 8.26e+01 c.2.1.5,d.162.1.1 81107,81108 1n1jA 93 8.48e+01 a.22.1.3 79813 1ywfA 296 8.71e+01 1v54C 261 8.91e+01 f.25.1.1 100324