# List of top-scoring protein chains for t04-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1sfnA 246 2.84e-01 b.82.1.11 105496 2b3yA 888 1.18e+00 1fa0A 537 1.37e+00 1fa0B d.58.16.1,a.160.1.1,d.218.1.3 39335,75837,75838 1aqcA 172 1.44e+00 1x11A b.55.1.2 26983 1tx4B 178 1.69e+00 1ctqA c.37.1.8 32045 2au5A 139 1.93e+00 1nox 205 2.09e+00 1nox d.90.1.1 40242 2cy2A 174 2.19e+00 1rp4A 389 2.25e+00 a.227.1.1 105027 1b1cA 181 2.86e+00 1amoA c.23.5.2 31212 1kmqA 184 2.99e+00 c.37.1.8 84412 2f3yA 148 3.38e+00 1jboB 172 3.96e+00 a.1.1.3 84151 1se0A 116 4.75e+00 g.52.1.1 98814 1jbkA 195 5.23e+00 c.37.1.20 71631 1fna 93 5.36e+00 1fnf b.1.2.1 21971 1ynfA 458 5.93e+00 1hw7A 255 7.84e+00 1i7fA d.193.1.1 61297 1cznA 169 8.84e+00 1rcf c.23.5.1 31181 1ywmA 200 8.96e+00 1kmvA 186 9.09e+00 c.71.1.1 72757 1exrA 148 1.01e+01 1cll a.39.1.5 17299 351c 82 1.09e+01 451c a.3.1.1 15905 1eqfA 280 1.09e+01 1eqfA a.29.2.1,a.29.2.1 16972,16973 2av9A 147 1.10e+01 451c 82 1.11e+01 451c a.3.1.1 15904 1ddwA 120 1.20e+01 1evhA b.55.1.4 27001 1f7cA 231 1.22e+01 1f7cA a.116.1.1 19107 1ye8A 178 1.23e+01 1r5lA 262 1.24e+01 a.5.3.1,c.13.1.1 97099,97100 2a72A 146 1.30e+01 1es9A 232 1.47e+01 1wab c.23.10.3 31340 1zj6A 187 1.51e+01 1vdnA 162 1.52e+01 1wab 232 1.52e+01 1wab c.23.10.3 31341 1js8A 394 1.57e+01 a.86.1.1,b.112.1.1 67219,67220 1xm7A 195 1.57e+01 2ayuA 417 1.59e+01 1y2kA 349 1.59e+01 1ozjA 144 1.62e+01 d.164.1.1 93846 1b9oA 123 1.63e+01 3lzt d.2.1.2 36597 1quuA 250 1.66e+01 1quuA a.7.1.1,a.7.1.1 16320,16321 1mkfA 382 1.79e+01 b.116.1.1 79232 1u6eA 335 1.80e+01 1v2xA 194 1.82e+01 c.116.1.1 100274 1pzqA 60 1.88e+01 a.34.3.1 95466 2g7uA 257 1.93e+01 1wa5C 960 2.06e+01 1hq3C 136 2.14e+01 1aoiA a.22.1.1 16454 1azwA 313 2.17e+01 1qtrA c.69.1.7 34658 2gw6A 123 2.20e+01 1mhdA 132 2.20e+01 1mhdA d.164.1.1 42175 1q4uA 151 2.30e+01 d.38.1.5 95828 1pveA 72 2.31e+01 a.189.1.1 104322 1tzyC 136 2.33e+01 a.22.1.1 107532 1oy3D 282 2.38e+01 d.211.1.1 87554 1no7A 604 2.41e+01 e.48.1.1 92016 2fmlA 273 2.43e+01 1ir6A 424 2.45e+01 c.107.1.2 71342 1kx5A 135 2.46e+01 a.22.1.1 77593 1oejA 193 2.48e+01 b.60.1.4 92798 1d8hA 311 2.67e+01 1d8iA d.63.1.1 39544 2d00A 109 2.77e+01 1g4yR 148 2.84e+01 1cll a.39.1.5 60252 1cpcB 172 2.91e+01 1qgwC a.1.1.3 15644 1qsoA 149 2.91e+01 1qsmA d.108.1.1 40812 1txlA 215 2.91e+01 b.60.1.4 107429 1v73A 342 2.94e+01 1r2rA 248 3.01e+01 c.1.1.1 96875 1nhkL 144 3.04e+01 1npk d.58.6.1 39142 1qoiA 177 3.10e+01 2cpl b.62.1.1 27490 3znf 30 3.17e+01 g.37.1.1 45049 1xorA 349 3.19e+01 1jmvA 141 3.19e+01 c.26.2.4 66897 1tph1 247 3.24e+01 1amk 1y8oB 128 3.24e+01 2bycA 137 3.31e+01 1j96A 323 3.38e+01 c.1.7.1 71616 1kqqA 139 3.47e+01 a.4.3.1 72885 1lmiA 131 3.52e+01 b.1.19.1 78098 2a61A 145 3.52e+01 2g2cA 167 3.53e+01 1f60B 94 3.63e+01 1b64 d.58.12.1 39307 2a9sA 171 3.69e+01 1h97A 147 3.84e+01 1h97A a.1.1.2 60812 1xfxO 149 3.84e+01 1zkdA 387 3.84e+01 2av5A 120 3.86e+01 1oc0B 51 3.95e+01 g.64.1.1 86791 1ohvA 472 3.96e+01 c.67.1.4 93031 1q2hA 69 3.98e+01 a.34.4.1 104498 1uohA 226 4.08e+01 d.211.1.1 99690 1vk8A 106 4.12e+01 d.58.48.1 108636 1ni3A 392 4.16e+01 c.37.1.8,d.15.10.2 80531,80532 1qsmA 152 4.17e+01 1qsmA d.108.1.1 40808 1w0nA 131 4.22e+01 1htwA 158 4.28e+01 c.37.1.18 71083 1ua7A 422 4.29e+01 b.71.1.1,c.1.8.1 107759,107760 1izmA 184 4.35e+01 a.199.1.1 90725 1hxrA 115 4.37e+01 1fwqA b.88.1.1 28392 2f4mB 61 4.41e+01 2bh1A 250 4.41e+01 1bftA 101 4.56e+01 1a3qA b.1.18.1 21934 1a8e 329 4.58e+01 1cb6A c.94.1.2 35888 1phnB 172 4.71e+01 1qgwC a.1.1.3 15642 2aujD 309 4.78e+01 1s12A 94 4.94e+01 1tc1A 220 4.99e+01 1tc1A c.61.1.1 34083 1ja1A 622 5.16e+01 1amoA b.43.4.1,c.23.5.2,c.25.1.4 62803,62804,62805 1w0hA 204 5.22e+01 1vcc 77 5.23e+01 1vcc d.121.1.1 41092 1bag 425 5.28e+01 1bag b.71.1.1,c.1.8.1 27720,28707 2ab5A 269 5.30e+01 1hrnA 337 5.48e+01 1smrA b.50.1.2 26869 1tbbA 332 5.69e+01 a.211.1.2 106741 1x3lA 440 5.86e+01 1grx 85 5.99e+01 1kte c.47.1.1 32766 1rhxA 87 6.04e+01 1bl0A 129 6.04e+01 1d5yA a.4.1.8,a.4.1.8 16053,16054 1oboA 169 6.05e+01 c.23.5.1 86776 1gouA 116 6.10e+01 d.1.1.2 65429 1hzpA 335 6.38e+01 1hn9A c.95.1.2,c.95.1.2 61455,61456 1an9A 340 6.41e+01 1an9A c.4.1.2,d.16.1.3 30617,37904 1js3A 486 6.44e+01 c.67.1.6 67215 1rcf 169 6.48e+01 1rcf c.23.5.1 31170 1dp4A 435 6.53e+01 1dp4A c.93.1.1 35710 1kxpD 458 6.54e+01 a.126.1.1,a.126.1.1,a.126.1.1 73160,73161,73162 2cqfA 63 6.55e+01 1zboA 210 6.60e+01 1my7A 114 6.66e+01 b.1.18.1 79675 1nh1A 330 6.79e+01 e.45.1.1 91871 2freA 200 7.05e+01 1wy9A 147 7.05e+01 1aa8A 347 7.11e+01 1an9A 1tw7A 99 7.20e+01 1i2mA 216 7.20e+01 1byuA c.37.1.8 61568 2ck3G 272 7.23e+01 1yqtA 538 7.32e+01 1k77A 260 7.33e+01 c.1.15.5 72096 1ydgA 211 7.36e+01 2alzA 390 7.46e+01 1tqyB 415 7.52e+01 c.95.1.1,c.95.1.1 107247,107248 1mp9A 198 7.57e+01 d.129.1.1,d.129.1.1 91385,91386 1bvyF 191 7.60e+01 1bvyF c.23.5.1 31207 1d2zB 153 7.63e+01 1d2zB a.77.1.2 18439 2bmjA 178 7.70e+01 2ct5A 73 7.85e+01 1fzqA 181 7.93e+01 1hurA c.37.1.8 32060 1n9eA 787 8.01e+01 b.30.2.1,d.17.2.1,d.17.2.1 91708,91709,91710 1kgyA 181 8.15e+01 b.18.1.4 72449 1irdB 146 8.21e+01 a.1.1.2 66287 3htsB 102 8.24e+01 2hts a.4.5.22 16175 2fbhA 146 8.26e+01 2phlA 397 8.44e+01 1dgwA b.82.1.2,b.82.1.2 28082,28083 1vi1A 345 8.48e+01 c.77.1.4 100724 1htyA 1015 8.59e+01 a.8.3.1,b.30.5.6,c.6.2.1 83064,83065,83066 1fkqA 124 8.63e+01 3lzt d.2.1.2 36601 1ggzA 148 8.70e+01 a.39.1.5 70176 1e20A 209 8.77e+01 1e20A c.34.1.1 31759 2fflA 756 8.79e+01 1fadA 99 8.84e+01 1fadA a.77.1.2 18428 1yf5L 254 8.93e+01 1eexA 554 8.94e+01 1dioA c.1.19.3 29650 1i0lA 221 8.98e+01 c.61.1.1 71096