# List of top-scoring protein chains for T0317.t06-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1m3gA 145 1.35e-23 c.45.1.1 84783 1wrmA 165 2.25e-23 1mkp 144 1.04e-22 1vhrA c.45.1.1 32654 1yz4A 160 5.10e-22 1vhrA 184 1.09e-21 1vhrA c.45.1.1 32651 2fh7A 595 4.91e-21 1j4xA 184 9.27e-21 c.45.1.1 66392 2c7sA 313 1.19e-20 2ahsA 295 1.57e-20 1gwz 299 1.62e-20 2shpA c.45.1.2 32685 2b3oA 532 2.46e-20 2b49A 287 8.56e-20 2cfvA 316 8.86e-20 1d5rA 324 1.03e-19 1d5rA b.7.1.1,c.45.1.1 23181,32697 1larA 575 1.40e-19 1larA c.45.1.2,c.45.1.2 32693,32694 2shpA 525 1.60e-19 2shpA c.45.1.2,d.93.1.1,d.93.1.1 32683,40533,40534 1fprA 284 1.67e-19 2shpA c.45.1.2 59949 1rpmA 278 2.97e-19 2shpA c.45.1.2 32679 1yfoA 302 3.38e-19 2shpA c.45.1.2 32681 1p15A 253 3.61e-19 c.45.1.2 93894 1ohcA 348 6.13e-19 c.45.1.1,c.45.1.1 87009,87010 2fjmA 310 7.34e-19 1c86A 298 7.62e-19 1pty c.45.1.2 32668 1c83A 298 8.26e-19 1pty c.45.1.2 32660 2azrA 299 8.38e-19 1bzjA 297 8.40e-19 1pty c.45.1.2 32667 2f71A 298 8.41e-19 2f6fA 302 8.52e-19 1q6nA 310 8.72e-19 c.45.1.2 95984 1nwlA 298 8.88e-19 c.45.1.2 86300 1l8gA 321 9.02e-19 c.45.1.2 73689 1oemX 321 9.10e-19 c.45.1.2 86916 1lqfA 295 1.28e-18 c.45.1.2 74187 1bzhA 298 1.43e-18 1pty c.45.1.2 32664 1bzcA 321 1.54e-18 1pty c.45.1.2 32670 1gfyA 298 1.90e-18 1pty c.45.1.2 32666 1a5y 330 4.89e-18 1pty c.45.1.2 32673 1ptuA 321 5.23e-18 1pty c.45.1.2 32675 1oheA 348 5.45e-18 c.45.1.1,c.45.1.1 87013,87014 1pa1A 310 6.83e-18 c.45.1.2 94404 1i57A 310 7.91e-18 1pty c.45.1.2 61772 1ptvA 321 8.15e-18 1pty c.45.1.2 32665 1eeoA 321 8.26e-18 1pty c.45.1.2 32655 1aax 321 8.33e-18 1pty c.45.1.2 32657 2gp0A 309 1.78e-17 1zc0A 309 1.81e-17 1wchA 315 1.82e-17 1g1fA 298 1.84e-17 1pty c.45.1.2 32662 2a3kA 296 1.93e-17 2a8bA 283 2.84e-17 2gjtA 295 3.00e-17 2g59A 297 3.23e-17 2bzlA 325 3.42e-17 1jlnA 297 4.44e-17 1pty c.45.1.2 63172 1l8kA 314 4.76e-17 c.45.1.2 73691 1ygrA 610 6.70e-17 1rxdA 159 3.53e-16 1zckA 154 3.58e-16 1x24A 180 3.60e-16 2c46A 241 6.40e-16 1i9sA 210 1.20e-15 1i9sA c.45.1.1 62099 1xm2A 173 1.75e-15 1zclA 180 2.77e-15 1v3aA 173 4.51e-15 1r6hA 172 4.66e-15 c.45.1.1 97150 2bijA 305 5.27e-15 1fpzA 212 5.31e-15 1fpzA c.45.1.1 59976 1xriA 151 1.78e-14 1yn9A 169 2.11e-14 2cjzA 305 5.35e-14 2bv5A 282 5.78e-14 1g4wR 383 1.53e-09 1g4uS a.24.11.1,c.45.1.2 16644,32692 1pa9A 284 1.56e-09 c.45.1.2 94411 1yptA 305 1.61e-09 1ytw c.45.1.2 32686 1qz0A 306 1.61e-09 c.45.1.2 96607 1xxvA 306 1.61e-09 1yts 278 1.55e-08 1ytw c.45.1.2 32690 1lyvA 306 2.04e-08 c.45.1.2 74348 1xxpA 306 2.04e-08 1ywfA 296 2.11e-08 1u24A 337 8.83e-07 2f46A 156 3.41e-05 1zsqA 528 6.35e-02 1lw3A 657 6.95e-02 b.55.1.8,c.45.1.3 91152,91153 1g6oA 330 1.24e-01 1g6oA c.37.1.11 32430 1zxxA 319 2.49e-01 1tw3A 360 2.96e-01 a.4.5.29,c.66.1.12 107373,107374 1ylhA 560 4.95e-01 1vpaA 234 8.59e-01 1z6tA 591 1.70e+00 1ojrA 274 3.32e+00 c.74.1.1 93147 1gt7A 274 3.56e+00 c.74.1.1 70398 2fsxA 148 5.29e+00 1zoiA 276 5.69e+00 1kyzA 365 6.36e+00 a.4.5.29,c.66.1.12 73312,73313 1tcdA 249 6.48e+00 1amk c.1.1.1 28497 1ci1A 251 6.50e+00 1amk c.1.1.1 28499 1oi4A 193 7.22e+00 c.23.16.2 87047 1o17A 345 7.70e+00 a.46.2.1,c.27.1.1 80765,80766 1jhzA 289 9.07e+00 c.93.1.1 66731 1qlwA 328 9.25e+00 1qlwA c.69.1.15 34722 1jfsA 340 9.37e+00 a.35.1.5,c.93.1.1 66650,66651 1jwoA 97 9.57e+00 d.93.1.1 63310 1avqA 228 1.05e+01 1avqA c.52.1.13 33326 1z34A 235 1.05e+01 1qlwB 328 1.06e+01 1qlwA c.69.1.15 34723 1aw2A 256 1.06e+01 1amk c.1.1.1 28523 2pugA 340 1.06e+01 1qpzA a.35.1.5,c.93.1.1 17088,35683 2pucA 340 1.07e+01 1qpzA a.35.1.5,c.93.1.1 17094,35684 1treA 255 1.09e+01 1amk c.1.1.1 28505 1dbqA 289 1.11e+01 1qpzA c.93.1.1 35666 1qpzA 340 1.15e+01 1qpzA a.35.1.5,c.93.1.1 17097,35673 1vpwA 340 1.15e+01 1qpzA a.35.1.5,c.93.1.1 17087,35680 1qqbA 340 1.15e+01 1qpzA a.35.1.5,c.93.1.1 17099,35674 1jh9A 340 1.29e+01 a.35.1.5,c.93.1.1 66710,66711 1jftA 340 1.31e+01 a.35.1.5,c.93.1.1 66652,66653 1tmhA 254 1.33e+01 1amk c.1.1.1 28507 1skyE 473 1.34e+01 1skyE a.69.1.1,b.49.1.1,c.37.1.11 18314,26479,32359 1sqgA 429 1.41e+01 a.79.1.3,c.66.1.38 105912,105913 1oen 540 1.41e+01 1ayl c.91.1.1,c.109.1.1 64750,64751 1p0iA 529 1.42e+01 c.69.1.1 93867 2d5cA 263 1.54e+01 1ireB 228 1.56e+01 b.34.4.4 76770 1ugpB 226 1.58e+01 b.34.4.4 107832 1t31A 226 1.64e+01 1ujvA 96 1.66e+01 b.36.1.1 99470 1q0gA 117 1.68e+01 a.24.22.1 104428 1uirA 314 1.69e+01 c.66.1.17 99429 1urhA 280 1.72e+01 c.46.1.2,c.46.1.2 99829,99830 1h7sA 365 1.88e+01 d.14.1.3,d.122.1.2 65705,65706 1ea6A 364 1.88e+01 d.14.1.3,d.122.1.2 64871,64872 1klt 226 1.88e+01 5ptp b.47.1.2 26300 1nn6A 228 1.91e+01 b.47.1.2 85893 1h3fA 432 1.98e+01 c.26.1.1,d.66.1.4 76631,76632 1yyaA 250 2.07e+01 1vimA 200 2.08e+01 c.80.1.3 100758 1uanA 227 2.10e+01 c.134.1.1 99135 1eufA 227 2.12e+01 5ptp b.47.1.2 59506 1vqvA 306 2.19e+01 1e79D 482 2.29e+01 1skyE a.69.1.1,b.49.1.1,c.37.1.11 18272,26437,32317 1rrsA 369 2.34e+01 a.96.1.2,d.113.1.3 97800,97801 1pjhA 280 2.37e+01 c.14.1.3 94761 1l3iA 192 2.41e+01 c.66.1.22 77676 1cqjA 286 2.47e+01 2scuA c.2.1.8,c.23.4.1 30305,31133 1ciu 683 2.53e+01 1cxlA b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21852,22521,27759,28746 1h4iA 599 2.58e+01 4aahA b.70.1.1 60586 1nbmD 480 2.58e+01 1skyE a.69.1.1,b.49.1.1,c.37.1.11 18290,26455,32335 1h4jA 599 2.59e+01 4aahA b.70.1.1 60590 2ck3D 482 2.59e+01 2scuA 288 2.65e+01 2scuA c.2.1.8,c.23.4.1 30303,31131 1t9kA 347 2.78e+01 c.124.1.5 106721 1w6sA 599 2.90e+01 1szuA 426 3.00e+01 1mabB 479 3.06e+01 1skyE a.69.1.1,b.49.1.1,c.37.1.11 18312,26477,32357 1f9bA 695 3.08e+01 1cb6A c.94.1.2,c.94.1.2 35869,35870 1qxnA 137 3.09e+01 c.46.1.3 96537 1tq1A 129 3.14e+01 c.46.1.3 107198 2ftcA 189 3.16e+01 1b1xA 689 3.22e+01 1cb6A c.94.1.2,c.94.1.2 35865,35866 1npyA 271 3.22e+01 c.2.1.7,c.58.1.5 85995,85996 1z7qc 231 3.23e+01 1ve3A 227 3.25e+01 1rh9A 373 3.27e+01 1xdwA 331 3.43e+01 1hnr 47 3.50e+01 1hnr a.155.1.1 17896 1szkA 426 3.57e+01 1sffA 426 3.62e+01 c.67.1.4 105482 1szsA 426 3.73e+01 1dxgA 36 3.73e+01 1dxgA g.41.5.2 45247 1tmy 120 3.74e+01 1dbwA c.23.1.1 31083 1u0sY 118 3.76e+01 c.23.1.1 107566 1lt8A 406 3.79e+01 c.1.26.1 78186 1zj8A 566 3.87e+01 1ftxA 387 3.92e+01 b.49.2.2,c.1.6.1 76191,76192 2sfpA 388 3.93e+01 1bd0A b.49.2.2,c.1.6.1 26484,28646 1bd0A 388 3.93e+01 1bd0A b.49.2.2,c.1.6.1 26480,28642 1t6iA 118 3.94e+01 a.24.22.1 106571 1m3sA 186 3.96e+01 c.80.1.3 78573 1xqlA 388 3.97e+01 1xvbA 527 3.99e+01 1mtyD 512 4.00e+01 1mhyD a.25.1.2 16742 1t6uA 117 4.02e+01 a.24.22.1 106584 3ldh 330 4.03e+01 3ldh i.12.1.1 46015 1h6qA 168 4.14e+01 1h6qA b.88.1.2 60692 1bxdA 161 4.15e+01 1bxdA d.122.1.3 41111 1vivA 197 4.17e+01 c.80.1.3 100775 1yt8A 539 4.36e+01 1ogqA 313 4.40e+01 c.10.2.8 86996 1bmtA 246 4.44e+01 1bmtA a.46.1.1,c.23.6.1 17757,31235 1yewA 382 4.44e+01 1r1a1 287 4.46e+01 1aym1 1k7yA 577 4.47e+01 a.46.1.1,c.23.6.1,d.173.1.1 68272,68273,68274 1q2xA 371 4.66e+01 c.2.1.3,d.81.1.1 104503,104504 1tpfA 250 4.67e+01 1amk c.1.1.1 28467 1a88A 275 4.67e+01 1brt c.69.1.12 34707 1tkkA 366 4.68e+01 c.1.11.2,d.54.1.1 107089,107090 1k6mA 432 4.81e+01 c.37.1.7,c.60.1.4 77275,77276 1yv9A 264 4.82e+01 1pk9A 237 4.84e+01 c.56.2.1 94823 1ecpA 238 4.85e+01 1ecpA c.56.2.1 33775 1pw7A 239 4.87e+01 c.56.2.1 95202 1pu2A 371 4.91e+01 c.2.1.3,d.81.1.1 104308,104309 2a74C 343 4.93e+01 1nkvA 256 5.00e+01 c.66.1.21 80577 1ovgA 238 5.02e+01 c.56.2.1 93596 1ihuA 589 5.19e+01 c.37.1.10,c.37.1.10 62394,62395 1jeoA 180 5.24e+01 c.80.1.3 66611 1outA 143 5.24e+01 1abwA a.1.1.2 15400 1kw3B 292 5.35e+01 d.32.1.3,d.32.1.3 77549,77550 1nwhA 371 5.48e+01 c.2.1.3,d.81.1.1 92233,92234 2a8yA 270 5.55e+01 1xg4A 295 5.71e+01 1vi7A 217 5.74e+01 d.14.1.11,d.58.11.2 100740,100741 1zofA 198 5.76e+01 1fntc 231 5.78e+01 1pcfA 66 5.83e+01 1pcfA d.18.1.1 38142 1rscI 111 5.89e+01 1nsiA 431 6.01e+01 1nseA d.174.1.1 42522 1llp 343 6.05e+01 1arv a.93.1.1 18578 2c4kA 370 6.19e+01 1y6fA 403 6.28e+01 1y8zA 402 6.29e+01 1xv5A 401 6.30e+01 1yarO 237 6.42e+01 1ozaA 371 6.62e+01 c.2.1.3,d.81.1.1 104045,104046 2copA 109 6.72e+01 1b85A 351 6.73e+01 1arv a.93.1.1 18581 4nosA 427 6.78e+01 1nseA d.174.1.1 42516 1pr3A 371 6.79e+01 c.2.1.3,d.81.1.1 104300,104301 1pqpA 371 6.89e+01 c.2.1.3,d.81.1.1 104286,104287 1m53A 570 6.90e+01 b.71.1.1,c.1.8.1 84805,84806 1nwcA 371 7.00e+01 c.2.1.3,d.81.1.1 92229,92230 1b80A 351 7.01e+01 1arv a.93.1.1 18579 1g2iA 166 7.05e+01 1g2iA c.23.16.2 31438 1ps8A 371 7.12e+01 c.2.1.3,d.81.1.1 104304,104305 1qs1A 462 7.13e+01 1qs1A d.166.1.1,d.166.1.1 42260,42261 1uxvA 501 7.14e+01 c.82.1.1 108127 1ky8A 501 7.22e+01 c.82.1.1 77628 1yrvA 169 7.24e+01 1z3uA 217 7.25e+01 1v4nA 281 7.35e+01 2b9lA 394 7.37e+01 1qhhD 169 7.39e+01 1pjr 1pquA 371 7.39e+01 c.2.1.3,d.81.1.1 104288,104289 1a7j 290 7.48e+01 1a7j c.37.1.6 31952 1tb5A 381 7.50e+01 a.211.1.2 106735 2bdtA 189 7.51e+01 1uxtA 501 7.53e+01 c.82.1.1 108125 1r0kA 388 7.55e+01 a.69.3.1,c.2.1.3,d.81.1.3 104723,104724,104725 1qltA 560 7.60e+01 1qltA d.58.32.1,d.145.1.1 39457,41720 1z3sA 217 7.66e+01 1j0dA 341 7.67e+01 c.79.1.1 83902 1b9bA 255 7.81e+01 1amk c.1.1.1 28531 1oynA 360 7.85e+01 a.211.1.2 87609 1tp9A 162 7.89e+01 2fm0A 361 7.90e+01 1xm6A 398 7.92e+01 1kgsA 225 8.00e+01 a.4.6.1,c.23.1.1 68596,68597 2fnaA 357 8.01e+01 1e8gA 560 8.02e+01 1qltA d.58.32.1,d.145.1.1 39455,41718 1f0jA 377 8.05e+01 1f0jA a.211.1.2 19346 1nulA 152 8.06e+01 1nulA c.61.1.1 34011 1rorA 378 8.07e+01 1qpdA 279 8.09e+01 1fmk d.144.1.7 41687 1skz 119 8.11e+01 1skz g.3.15.1,g.3.15.1 44366,44367 2ap1A 327 8.11e+01 1f2dA 341 8.13e+01 1f2dA c.79.1.1 35298 1mumA 295 8.15e+01 c.1.12.7 85108 1j0eA 341 8.27e+01 c.79.1.1 83906 2erl 40 8.60e+01 2erl a.10.1.1 16360 1p1dA 196 8.63e+01 b.36.1.1,b.36.1.1 93896,93897 1m5yA 408 8.69e+01 a.167.1.1,d.26.1.1,d.26.1.1 78664,78665,78666 2atvA 196 8.81e+01