Best Alignments for T0316

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
1vl2A/T0316-1vl2A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1vl2A/T0316-1vl2A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.3476e-361.42e-88 c.26.2.1
d.210.1.1
1wy5A/T0316-1wy5A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1wy5A/T0316-1wy5A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.5806e-241.54e-65
1gpmA/T0316-1gpmA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1gpmA/T0316-1gpmA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 6.3387e-209.85e-52 1gpmA c.23.16.1
c.26.2.1
d.52.2.1
1xngA/T0316-1xngA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1xngA/T0316-1xngA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.9710e-161.07e-49
1kqpA/T0316-1kqpA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1kqpA/T0316-1kqpA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 6.6662e-123.98e-45 c.26.2.1
1wxiA/T0316-1wxiA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1wxiA/T0316-1wxiA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.9632e-109.02e-47
2d13A/T0316-2d13A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2d13A/T0316-2d13A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.3809e-104.46e-49
1ct9A/T0316-1ct9A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1ct9A/T0316-1ct9A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 8.7277e-102.37e-26 1ct9A c.26.2.1
d.153.1.1
1sur/T0316-1sur-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1sur/T0316-1sur-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.0242e-072.33e-37 1sur c.26.2.2
1jmvA/T0316-1jmvA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1jmvA/T0316-1jmvA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 7.6336e-031.15e-18 c.26.2.4

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001