# List of top-scoring protein chains for t04-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1korA 400 3.82e-46 c.26.2.1,d.210.1.1 72824,72825 1vl2A 421 1.28e-43 c.26.2.1,d.210.1.1 108708,108709 1ni5A 433 6.82e-32 c.26.2.5,d.229.1.1 80533,80534 1wy5A 317 7.27e-32 1gpmA 525 3.84e-29 1gpmA c.23.16.1,c.26.2.1,d.52.2.1 31405,31608,38826 1k92A 455 5.80e-24 c.26.2.1,d.210.1.1 68325,68326 1xngA 268 4.19e-18 1ih8A 271 7.04e-09 2nsyA c.26.2.1 62377 1kqpA 271 8.66e-09 c.26.2.1 72883 1wxiA 275 6.70e-07 2d13A 227 1.21e-06 1ru8A 232 4.95e-06 c.26.2.1 97849 1m1zA 513 1.20e-05 c.26.2.1,d.153.1.1 78457,78458 1ct9A 553 4.65e-05 1ct9A c.26.2.1,d.153.1.1 31616,41834 1q15A 503 1.99e-04 c.26.2.1,d.153.1.1 95538,95539 1uc8A 280 8.81e-04 c.30.1.6,d.142.1.7 99165,99166 1sur 215 1.45e-02 1sur c.26.2.2 31620 2blnA 305 4.17e-02 1dv1A 449 8.64e-02 1bncA b.84.2.1,c.30.1.1,d.142.1.2 28234,31641,41486 2a2pA 129 2.69e-01 2aq8A 269 3.31e-01 1yo8A 634 3.43e-01 1v6tA 255 3.63e-01 1vp8A 201 3.64e-01 1rpnA 335 4.87e-01 c.2.1.2 97708 1jmvA 141 5.52e-01 c.26.2.4 66897 2cdnA 201 6.11e-01 1vl5A 260 6.20e-01 c.66.1.41 108720 1eswA 500 7.73e-01 1cwyA c.1.8.1 59500 1rxyA 253 9.19e-01 c.56.2.1 98065 1vl8A 267 9.27e-01 c.2.1.2 108733 1ls1A 295 1.04e+00 a.24.13.1,c.37.1.10 78170,78171 1cb0A 283 1.15e+00 1cb0A c.56.2.1 33790 1zzmA 259 1.20e+00 1ipaA 274 1.30e+00 c.116.1.1,d.79.3.3 71254,71255 4pfk 319 1.33e+00 3pfk c.89.1.1 35582 1qczA 169 1.34e+00 1qczA c.23.8.1 31276 1eny 268 1.49e+00 1eny c.2.1.2 29910 1gc0A 398 2.24e+00 c.67.1.3 70168 2ng1 293 2.24e+00 1ng1 a.24.13.1,c.37.1.10 16962,32273 2a8yA 270 2.29e+00 1fyeA 229 2.29e+00 1fyeA c.23.16.4 31477 2bvlA 543 2.88e+00 1vr6A 350 3.35e+00 1l7mA 211 3.59e+00 c.108.1.4 73664 1xxlA 239 4.60e+00 2awdA 323 4.71e+00 1j7xA 302 5.30e+00 c.14.1.2 66425 1eu8A 409 5.50e+00 1eu8A c.94.1.1 59502 2tpsA 227 5.54e+00 2tpsA c.1.3.1 28591 1iirA 415 5.66e+00 1iirA c.87.1.5 62453 1j97A 211 6.01e+00 1f5sA c.108.1.4 62753 1lx7A 253 6.05e+00 c.56.2.1 74329 1ktaA 365 6.33e+00 e.17.1.1 77533 1r4yA 136 6.95e+00 d.1.1.3 97056 1gsoA 431 7.04e+00 1gsoA b.84.2.1,c.30.1.1,d.142.1.2 28240,31647,41492 1jf9A 408 7.06e+00 1c0nA c.67.1.3 62931 2f46A 156 7.08e+00 1djxB 624 7.10e+00 1djxB a.39.1.7,b.7.1.1,c.1.18.1 17343,23160,29588 2a1hA 365 7.11e+00 1b06A 210 7.14e+00 1avmA a.2.11.1,d.44.1.1 15740,38737 2f02A 323 7.32e+00 1thfD 253 7.49e+00 1thfD c.1.2.1 28535 1st9A 143 7.51e+00 c.47.1.10 98987 1g0oA 283 7.52e+00 1ybvA c.2.1.2 60181 1mk4A 157 7.84e+00 d.108.1.1 84979 1w53A 84 8.48e+00 a.186.1.2 109175 2cvjA 180 8.58e+00 2coeA 120 8.82e+00 1sheA 103 9.03e+00 d.274.1.1 105551 1jhfA 202 9.70e+00 a.4.5.2,b.87.1.1 63057,63058 1jr5A 90 9.73e+00 a.150.1.1 67113 1yhfA 115 9.82e+00 1z0sA 278 1.00e+01 1x42A 232 1.01e+01 1rzhM 307 1.01e+01 f.26.1.1 98165 1ux5A 411 1.02e+01 a.207.1.1 100144 1wxdA 263 1.03e+01 1wryA 121 1.04e+01 1umhA 184 1.05e+01 b.18.1.21 99605 1yadA 221 1.05e+01 1r3dA 264 1.06e+01 1suwA 249 1.08e+01 e.52.1.1 106027 1rds 105 1.09e+01 9rnt d.1.1.4 36236 1u11A 182 1.09e+01 c.23.8.1 107576 1ekfA 365 1.12e+01 1ekfA e.17.1.1 59445 1vhoA 346 1.15e+01 b.49.3.1,c.56.5.4 100694,100695 1aqzA 149 1.16e+01 1aqzA d.1.1.3 36238 1u0tA 307 1.24e+01 e.52.1.1 107567 2d5cA 263 1.25e+01 1j6oA 268 1.28e+01 c.1.9.12 77088 1vkmA 297 1.28e+01 c.138.1.1 108670 2ac2A 309 1.30e+01 1l7bA 92 1.32e+01 c.15.1.2 91053 1zccA 248 1.33e+01 1rzmA 338 1.34e+01 c.1.10.4 105137 2ac4A 309 1.34e+01 1wcwA 261 1.39e+01 1j8yF 297 1.39e+01 1ng1 a.24.13.1,c.37.1.10 62747,62748 1o5iA 249 1.42e+01 c.2.1.2 92499 2bypA 214 1.46e+01 1xfsA 178 1.48e+01 d.129.3.5 109589 1dozA 309 1.54e+01 1ak1 c.92.1.1 35592 1kv5A 250 1.57e+01 c.1.1.1 73052 2ax4A 198 1.62e+01 1ihcA 188 1.64e+01 1di6A c.57.1.1 62379 1l7aA 318 1.64e+01 c.69.1.25 77772 1jljA 189 1.68e+01 c.57.1.1 63169 1uluA 261 1.70e+01 1v8fA 276 1.77e+01 c.26.1.4 100503 2crvA 120 1.82e+01 1vcoA 550 1.82e+01 c.23.16.1,c.37.1.10 108508,108509 2cy0A 263 1.85e+01 1flcB 175 1.86e+01 1flcB h.3.1.1 45716 1jztA 246 1.92e+01 c.104.1.1 63319 1db3A 372 1.94e+01 1db3A c.2.1.2 29813 1jflA 228 1.95e+01 c.78.2.1,c.78.2.1 71656,71657 1u6tA 121 1.99e+01 2f9sA 151 2.00e+01 2ct8A 497 2.02e+01 1kbjA 412 2.09e+01 c.1.4.1 72280 1vddA 228 2.11e+01 e.49.1.1 108519 1ve3A 227 2.12e+01 1jqlB 140 2.13e+01 c.37.1.20 63234 1ok7A 366 2.13e+01 d.131.1.1,d.131.1.1,d.131.1.1 103992,103993,103994 1wyuA 438 2.14e+01 1onqA 283 2.20e+01 b.1.1.2,d.19.1.1 93365,93366 2bynA 227 2.24e+01 1vknA 351 2.29e+01 c.2.1.3,d.81.1.1 108676,108677 1iicA 422 2.32e+01 1nmtA d.108.1.2,d.108.1.2 62422,62423 1b93A 152 2.33e+01 1b93A c.24.1.2 31507 1w41A 101 2.33e+01 2c0cA 362 2.34e+01 1v8yA 170 2.35e+01 1v8cA 168 2.37e+01 d.15.3.1,d.129.5.1 100495,100496 1n00A 321 2.38e+01 a.65.1.1 85241 2aujD 309 2.41e+01 1t2aA 375 2.42e+01 c.2.1.2 99078 1xqiA 195 2.42e+01 1lngA 87 2.46e+01 d.201.1.1 74045 1uliA 460 2.48e+01 b.33.1.2,d.129.3.3 107921,107922 1wznA 252 2.53e+01 2polA 366 2.62e+01 2polA d.131.1.1,d.131.1.1,d.131.1.1 41356,41357,41358 1gxuA 91 2.68e+01 d.58.10.1 76378 1b35C 282 2.69e+01 1b35C 2pfkA 320 2.80e+01 3pfk c.89.1.1 35577 1tpfA 250 2.81e+01 1amk c.1.1.1 28467 2fi0A 81 2.84e+01 1vmiA 355 2.85e+01 2culA 232 2.90e+01 1wr2A 238 2.93e+01 1yhpA 212 2.97e+01 1yhtA 367 3.02e+01 1rvgA 305 3.06e+01 c.1.10.2 97920 1wjgA 137 3.07e+01 1xm7A 195 3.10e+01 1mmiA 366 3.17e+01 d.131.1.1,d.131.1.1,d.131.1.1 91309,91310,91311 2fazA 78 3.21e+01 1pvc3 238 3.23e+01 1aym3 2dlbA 80 3.24e+01 1vh7A 265 3.25e+01 c.1.2.1 100646 1wtaA 275 3.30e+01 2abqA 306 3.36e+01 1i0vA 104 3.37e+01 9rnt d.1.1.4 36054 1xu9A 286 3.37e+01 1h7mA 102 3.38e+01 d.79.3.1 83485 1zemA 262 3.41e+01 1o08A 221 3.52e+01 c.108.1.6 86525 1lu4A 136 3.55e+01 c.47.1.10 91124 1kz7A 353 3.62e+01 a.87.1.1,b.55.1.1 73333,73334 2an3A 289 3.64e+01 2gupA 292 3.65e+01 1wu7A 434 3.69e+01 2cc3A 150 3.74e+01 1xeaA 323 3.74e+01 c.2.1.3,d.81.1.5 109572,109573 1x7oA 287 3.75e+01 1oaqL 120 3.86e+01 b.1.1.1 92708 1zh2A 121 3.88e+01 1ufkA 254 3.92e+01 c.66.1.39 99340 2gjsA 176 3.99e+01 2gf9A 189 4.02e+01 2a25A 193 4.02e+01 1nvmA 345 4.04e+01 a.5.7.1,c.1.10.5 86249,86250 1rw1A 114 4.06e+01 2b4hA 254 4.19e+01 1ass 159 4.25e+01 1a6dA c.8.5.2 30818 1at3A 247 4.28e+01 1at3A b.57.1.1 27021 1iow 306 4.29e+01 1iow c.30.1.2,d.142.1.1 31713,41481 1wfxA 186 4.38e+01 1xrsA 516 4.40e+01 1shsA 147 4.42e+01 1shsA b.15.1.1 23675 1souA 194 4.49e+01 c.124.1.6 105858 1pvyA 227 4.66e+01 d.115.1.2 95195 2flsA 132 4.78e+01 1k1xA 659 4.84e+01 a.8.3.2,b.30.5.8,c.6.2.2 84279,84280,84281 2azqA 311 4.89e+01 1uadC 99 4.89e+01 b.1.18.18 88379 2c0rA 362 4.95e+01 1tksA 204 5.00e+01 d.115.1.2 107114 1wd7A 261 5.17e+01 1ymqA 261 5.26e+01 1lslA 113 5.36e+01 g.60.1.1,g.60.1.1 78178,78179 1js3A 486 5.37e+01 c.67.1.6 67215 1iugA 352 5.40e+01 c.67.1.3 90699 1hqkA 154 5.45e+01 c.16.1.1 65902 1w3uA 362 5.50e+01 1af7 274 5.56e+01 1af7 a.58.1.1,c.66.1.8 17928,34203 1larA 575 5.61e+01 1larA c.45.1.2,c.45.1.2 32693,32694 1zcoA 262 5.64e+01 1r89A 437 5.66e+01 a.160.1.3,d.218.1.7,d.58.16.2 97221,97222,97223 1sb2A 133 5.76e+01 1d2eA 397 5.84e+01 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25701,25741,32136 2f3nA 76 5.89e+01 1jpaA 312 5.92e+01 d.144.1.7 67011 1a6wL 109 5.98e+01 1mfa b.1.1.1 20252 1kapP 479 5.99e+01 1sat b.80.7.1,d.92.1.6 28012,40298 1hyeA 313 6.02e+01 2cmd c.2.1.5,d.162.1.1 61400,61401 1vm6A 228 6.04e+01 c.2.1.3,d.81.1.3 108876,108877 1n1xA 124 6.16e+01 d.5.1.1 91548 1gggA 226 6.24e+01 1lst c.94.1.1 35817 1l0bA 229 6.27e+01 c.15.1.3,c.15.1.3 73391,73392 1dbhA 354 6.27e+01 1awe a.87.1.1,b.55.1.1 18514,26967 1j8mF 297 6.29e+01 1ng1 a.24.13.1,c.37.1.10 62742,62743 1qcwA 410 6.36e+01 1gox c.1.4.1 28622 1knyA 253 6.37e+01 1knyA a.24.16.1,d.218.1.1 75896,75897 1vgjA 184 6.42e+01 2b3nA 159 6.43e+01 1jj2F 119 6.45e+01 1ffkE d.79.3.1 63091 1snnA 227 6.46e+01 d.115.1.2 105821 1louA 101 6.47e+01 1ris d.58.14.1 39323 2bx2L 517 6.48e+01 1n7hA 381 6.48e+01 c.2.1.2 80250 2bwkA 121 6.51e+01 1txkA 498 6.52e+01 b.1.18.2,b.30.5.9 107425,107426 2aeuA 374 6.54e+01 2apqA 139 6.55e+01 8fabA 212 6.60e+01 8fabA b.1.1.1,b.1.1.2 19772,20882 2dhqA 146 6.62e+01 2dhqA c.23.13.1 31382 1i7hA 111 6.70e+01 d.15.4.1 71122 1tu1A 148 6.73e+01 d.107.1.3 107316 1kskA 234 6.84e+01 d.66.1.5,d.265.1.3 72920,90389 2b9eA 303 6.91e+01 1yzhA 214 6.94e+01 1efvB 255 6.97e+01 1efvB c.26.2.3 31634 1vcc 77 7.00e+01 1vcc d.121.1.1 41092 1w0mA 226 7.10e+01 c.1.1.1 109027 2bznA 351 7.10e+01 1qy1A 174 7.11e+01 b.60.1.1 96568 1zndA 174 7.23e+01 1uanA 227 7.23e+01 c.134.1.1 99135 1bazA 53 7.26e+01 1bazA a.43.1.1 17421 2fifB 70 7.27e+01 1tif 78 7.31e+01 1tif d.15.8.1 37836 1rk8A 165 7.35e+01 d.58.7.1 97603 1qqfA 277 7.36e+01 1c3d a.102.4.4 18875 1wmiA 90 7.40e+01 1vjgA 218 7.44e+01 c.23.10.6 100810 1ywhA 313 7.44e+01 1hnnA 282 7.45e+01 c.66.1.15 65895 2bw0A 329 7.54e+01 1w36B 1180 7.58e+01 1ig8A 486 7.61e+01 2yhx c.55.1.3,c.55.1.3 64746,64747 1z3eA 132 7.62e+01 1s57A 153 7.64e+01 1z94A 147 7.67e+01 2cunA 410 7.76e+01 1h05A 146 7.76e+01 c.23.13.1 76433 1zkpA 268 7.85e+01 1qqgA 264 7.86e+01 1qqgA b.55.1.2,b.55.1.2 26987,26988 1jx2B 315 7.90e+01 c.37.1.8 67404 2fnaA 357 7.91e+01 1sumB 235 7.94e+01 a.7.12.1 106025 1olmA 403 7.95e+01 a.5.3.1,b.132.1.1,c.13.1.1 104008,104009,104010 1f6yA 262 8.04e+01 1f6yA c.1.21.2 29673 1tqxA 227 8.14e+01 1r85A 379 8.16e+01 c.1.8.3 104839 1fjgB 256 8.18e+01 1fjfB c.23.15.1 31400 1oz7A 131 8.20e+01 d.169.1.1 93806 1fsgA 233 8.20e+01 1qk3A c.61.1.1 34029 1x0oA 119 8.21e+01 1w6sB 74 8.28e+01 1xccA 220 8.31e+01 2d1yA 256 8.31e+01 1elvA 333 8.33e+01 5ptp b.47.1.2,g.18.1.1 59454,59455 1xeuA 263 8.35e+01 1k4tA 592 8.42e+01 a.2.8.1,d.163.1.2,e.15.1.1 77263,77264,77265 1j0aA 325 8.47e+01 c.79.1.1 83871 1uxtA 501 8.51e+01 c.82.1.1 108125 2c7nA 74 8.53e+01 1d2zB 153 8.53e+01 1d2zB a.77.1.2 18439 1j31A 262 8.65e+01 d.160.1.2 90808 2a7mA 250 8.67e+01 1ydmA 187 8.72e+01 1dcfA 136 8.75e+01 1dcfA c.23.1.2 31124 2d4qA 257 8.76e+01 1wxcB 134 8.77e+01 1yeyA 444 8.80e+01 3rabA 169 8.86e+01 1ctqA c.37.1.8 32018 1vrtA 560 8.91e+01 1rthA c.55.3.1,e.8.1.2 33574,43023 1xx6A 191 8.95e+01 1vdmA 153 8.95e+01 1pdkB 157 8.98e+01 1pdkB b.2.3.2 22427