# List of top-scoring protein chains for T0316.t2k-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1gpmA 525 9.22e-10 1gpmA c.23.16.1,c.26.2.1,d.52.2.1 31405,31608,38826 2c5sA 413 9.89e-10 1xngA 268 1.68e-08 1wy5A 317 2.24e-08 1ni5A 433 6.47e-07 c.26.2.5,d.229.1.1 80533,80534 1vl2A 421 1.83e-04 c.26.2.1,d.210.1.1 108708,108709 2d13A 227 1.42e-03 1korA 400 8.79e-03 c.26.2.1,d.210.1.1 72824,72825 1kqpA 271 1.13e-02 c.26.2.1 72883 1ru8A 232 1.60e-02 c.26.2.1 97849 1q15A 503 2.98e-02 c.26.2.1,d.153.1.1 95538,95539 1m1zA 513 3.25e-02 c.26.2.1,d.153.1.1 78457,78458 1k92A 455 8.25e-02 c.26.2.1,d.210.1.1 68325,68326 1ct9A 553 8.75e-02 1ct9A c.26.2.1,d.153.1.1 31616,41834 1wxiA 275 3.58e-01 1wqaA 455 1.69e+00 1o89A 345 2.34e+00 b.35.1.2,c.2.1.1 92644,92645 2a22A 215 2.44e+00 2bpqA 373 2.66e+00 1zvwA 378 2.70e+00 2a2pA 129 3.11e+00 1zczA 464 5.33e+00 1sh0A 510 7.44e+00 e.8.1.4 98876 2b43A 526 7.68e+00 2bxrA 527 8.86e+00 1z97A 266 8.92e+00 1z93A 266 1.02e+01 1dekA 241 1.20e+01 1dekA c.37.1.1 31842 2adr 60 1.28e+01 2adr g.37.1.1,g.37.1.1 45030,45031 1eepA 404 1.30e+01 1ak5 c.1.5.1 28636 1szrA 425 1.30e+01 2todA 425 1.33e+01 7odcA b.49.2.3,c.1.6.1 26489,28651 1f3tA 425 1.34e+01 7odcA b.49.2.3,c.1.6.1 26493,28655 1njjA 425 1.34e+01 b.49.2.3,c.1.6.1 91905,91906 1allA 160 1.48e+01 1qgwC a.1.1.3 15647 1m1tA 392 1.62e+01 c.95.1.1,c.95.1.1 78433,78434 1m3kA 392 1.62e+01 c.95.1.1,c.95.1.1 78565,78566 1ou6A 392 1.63e+01 c.95.1.1,c.95.1.1 104025,104026 1dluA 389 1.63e+01 1afwA c.95.1.1,c.95.1.1 35916,35917 1qflA 389 1.63e+01 1afwA c.95.1.1,c.95.1.1 35908,35909 1m4tA 392 1.63e+01 c.95.1.1,c.95.1.1 78617,78618 1bw0A 416 1.69e+01 1bw0A c.67.1.1 34385 1kn1A 160 1.73e+01 a.1.1.3 77455 1z1vA 80 1.76e+01 1uqvA 85 1.85e+01 a.60.1.2 99798 1ulzA 451 1.94e+01 b.84.2.1,c.30.1.1,d.142.1.2 99575,99576,99577 1r89A 437 1.96e+01 a.160.1.3,d.218.1.7,d.58.16.2 97221,97222,97223 1zunA 325 1.97e+01 1w17A 263 1.98e+01 1v4nA 281 2.14e+01 1w1b1 257 2.19e+01 1dbp 271 2.22e+01 2dri c.93.1.1 35639 1ny1A 240 2.24e+01 c.6.2.3 86395 1o5wA 534 2.26e+01 c.3.1.2,d.16.1.5 92520,92521 7odcA 424 2.52e+01 7odcA b.49.2.3,c.1.6.1 26488,28650 2f4iA 197 2.55e+01 1b33A 160 2.67e+01 1qgwC a.1.1.3 15649 1nmoA 247 2.70e+01 c.135.1.1 91980 2fq1A 287 2.79e+01 1w24A 182 2.85e+01 1z2wA 192 2.93e+01 1drj 271 3.02e+01 2dri c.93.1.1 35642 2dri 271 3.07e+01 2dri c.93.1.1 35637 1drk 271 3.24e+01 2dri c.93.1.1 35638 1x6hA 86 3.45e+01 8rucA 475 3.58e+01 1burA c.1.14.1,d.58.9.1 29339,39245 1rxoB 475 3.59e+01 1burA c.1.14.1,d.58.9.1 29352,39258 1rsgA 516 3.87e+01 2esdA 475 4.00e+01 1ba2A 271 4.04e+01 2dri c.93.1.1 35640 1t6sA 162 4.07e+01 2b8nA 429 4.15e+01 1wstA 417 4.21e+01 1bolA 222 4.23e+01 1bolA d.124.1.1 41120 2f5qA 274 4.27e+01 2f5nA 274 4.28e+01 1r2zA 274 4.32e+01 a.156.1.2,b.113.1.1,g.39.1.8 96892,96893,96894 1l1zA 274 4.32e+01 a.156.1.2,b.113.1.1,g.39.1.8 75911,75912,75913 1d7kA 421 4.41e+01 7odcA b.49.2.3,c.1.6.1 26486,28648 1xr5A 466 4.44e+01 1vbkA 307 4.54e+01 1eaxA 241 4.69e+01 b.47.1.2 64889 1cf3A 583 4.73e+01 1gpeA c.3.1.2,d.16.1.1 30385,37949 1t2aA 375 4.81e+01 c.2.1.2 99078 1bccA 446 4.88e+01 1be3A d.185.1.1,d.185.1.1 58946,58947 1pyqA 144 5.00e+01 b.52.2.1 95372 1qcrA 446 5.01e+01 1be3A d.185.1.1,d.185.1.1 59025,59026 1ppjA 446 5.03e+01 d.185.1.1,d.185.1.1 104252,104253 1ehyA 294 5.13e+01 1ehyA c.69.1.11 34693 1lvwA 295 5.16e+01 c.68.1.6 84723 1sqbA 480 5.27e+01 d.185.1.1,d.185.1.1 105890,105891 1mvwB 145 5.40e+01 i.15.1.1 79524 1pmzA 86 5.51e+01 a.39.1.10 104195 1ynpA 317 5.53e+01 1i3oA 175 5.64e+01 1pauA c.17.1.1 61603 1euhA 475 5.65e+01 1euhA c.82.1.1 35369 1ff3A 211 5.80e+01 1fvaA d.58.28.1 39411 1ds1A 324 5.90e+01 1drtA b.82.2.2 28127 1wdkA 715 5.91e+01 a.100.1.3,a.100.1.3,c.2.1.6,c.14.1.3 109250,109251,109252,109253 1yy5A 513 5.92e+01 1vquA 374 5.99e+01 2bzsA 236 6.00e+01 1sg0A 230 6.00e+01 1zx1A 231 6.00e+01 2mysB 166 6.06e+01 1wdcB a.39.1.5 17308 1scmB 145 6.06e+01 1wdcB a.39.1.5 17304 1kk8B 139 6.16e+01 a.39.1.5 77430 1pt0A 144 6.17e+01 b.52.2.1 95082 1cnv 299 6.24e+01 1cnv c.1.8.5 28989 1dflW 139 6.24e+01 1wdcB a.39.1.5 17306 2c12A 439 6.25e+01 1db3A 372 6.37e+01 1db3A c.2.1.2 29813 1wdcB 156 6.38e+01 1wdcB a.39.1.5 17302 2givA 295 6.40e+01 1xrjA 261 6.55e+01 1uj2A 252 6.58e+01 c.37.1.6 99452 1qnxA 209 6.71e+01 1qnxA d.111.1.1 40914 1shyB 551 6.79e+01 b.69.12.1,g.16.2.1 105565,105566 1wwrA 171 6.85e+01 1n4nA 47 7.10e+01 g.3.7.5 91620 1xg5A 279 7.12e+01 2a8nA 144 7.32e+01 1hey 128 7.35e+01 3chy c.23.1.1 31061 1tx2A 297 7.51e+01 c.1.21.1 107420 1wvfA 520 7.57e+01 1cz4A 185 7.57e+01 1cz4A b.52.2.3,d.31.1.1 26934,38468 1diiA 521 7.57e+01 1qltA d.58.32.1,d.145.1.1 39481,41744 1sauA 115 7.95e+01 1zsvA 349 8.01e+01 1wy0A 342 8.06e+01 1jmvA 141 8.15e+01 c.26.2.4 66897 1ugnA 198 8.16e+01 b.1.1.4,b.1.1.4 107828,107829 1cp3A 277 8.19e+01 1pauA c.17.1.1 30992 1vjzA 341 8.80e+01 c.1.8.3 100838