# List of top-scoring protein chains for T0316.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1gpmA 525 2.75e-22 1gpmA c.23.16.1,c.26.2.1,d.52.2.1 31405,31608,38826 1ni5A 433 3.08e-19 c.26.2.5,d.229.1.1 80533,80534 1korA 400 3.68e-19 c.26.2.1,d.210.1.1 72824,72825 1wy5A 317 6.59e-19 1vl2A 421 1.47e-18 c.26.2.1,d.210.1.1 108708,108709 2c5sA 413 2.00e-17 1xngA 268 5.59e-13 1kqpA 271 5.42e-07 c.26.2.1 72883 1k92A 455 1.73e-06 c.26.2.1,d.210.1.1 68325,68326 1zunA 325 3.34e-05 1wxiA 275 1.47e-04 2d13A 227 1.50e-04 1ct9A 553 4.13e-04 1ct9A c.26.2.1,d.153.1.1 31616,41834 1m1zA 513 4.18e-04 c.26.2.1,d.153.1.1 78457,78458 1ru8A 232 1.72e-03 c.26.2.1 97849 1q15A 503 1.32e-02 c.26.2.1,d.153.1.1 95538,95539 1wqaA 455 4.94e-02 1sur 215 6.67e-02 1sur c.26.2.2 31620 2bpqA 373 1.80e-01 1zvwA 378 1.85e-01 1uj2A 252 3.88e-01 c.37.1.6 99452 1xrjA 261 4.00e-01 1nf7A 514 4.49e-01 c.1.5.1,d.37.1.1,d.37.1.1 91852,91853,91854 1jr1A 514 1.33e+00 c.1.5.1,d.37.1.1,d.37.1.1 63241,63242,63243 1vp8A 201 1.62e+00 1z2iA 358 1.63e+00 1a3gA 308 3.28e+00 1daaA e.17.1.1 43286 1iyeA 309 3.28e+00 e.17.1.1 83786 1d6nA 214 3.65e+00 1qk3A c.61.1.1 34077 1pxyA 506 3.73e+00 a.40.1.1 104384 1i3oA 175 3.89e+00 1pauA c.17.1.1 61603 1jcnA 514 3.93e+00 c.1.5.1,d.37.1.1,d.37.1.1 84160,84161,84162 2c7fA 513 4.15e+00 1szrA 425 4.45e+00 2todA 425 4.97e+00 7odcA b.49.2.3,c.1.6.1 26489,28651 1njjA 425 5.31e+00 b.49.2.3,c.1.6.1 91905,91906 1f3tA 425 5.32e+00 7odcA b.49.2.3,c.1.6.1 26493,28655 1jztA 246 5.38e+00 c.104.1.1 63319 7odcA 424 5.58e+00 7odcA b.49.2.3,c.1.6.1 26488,28650 1jmvA 141 5.66e+00 c.26.2.4 66897 1wjgA 137 6.11e+00 1wdkA 715 6.47e+00 a.100.1.3,a.100.1.3,c.2.1.6,c.14.1.3 109250,109251,109252,109253 1xi8A 403 6.78e+00 1ulzA 451 7.75e+00 b.84.2.1,c.30.1.1,d.142.1.2 99575,99576,99577 1xpgA 765 7.77e+00 1xdjA 766 7.79e+00 1t7lA 766 7.80e+00 1cp3A 277 8.22e+00 1pauA c.17.1.1 30992 2liv 344 9.35e+00 2liv c.93.1.1 35708 1nmeA 146 9.57e+00 c.17.1.1 85874 1rhjA 147 9.62e+00 c.17.1.1 97481 1z15A 344 9.69e+00 1dljA 402 9.98e+00 1dliA a.100.1.4,c.2.1.6,c.26.3.1 18808,30212,31621 1dliA 402 1.03e+01 1dliA a.100.1.4,c.2.1.6,c.26.3.1 18809,30213,31622 1i84S 1184 1.18e+01 1lvk i.15.1.1 61940 1zp6A 191 1.18e+01 1ehyA 294 1.26e+01 1ehyA c.69.1.11 34693 1d7kA 421 1.29e+01 7odcA b.49.2.3,c.1.6.1 26486,28648 9ldtA 332 1.30e+01 3ldh c.2.1.5,d.162.1.1 30154,42121 1r89A 437 1.36e+01 a.160.1.3,d.218.1.7,d.58.16.2 97221,97222,97223 1s0yA 76 1.42e+01 d.80.1.1 98314 1lldA 319 1.46e+01 3ldh c.2.1.5,d.162.1.1 30177,42144 1dekA 241 1.51e+01 1dekA c.37.1.1 31842 1vkmA 297 1.67e+01 c.138.1.1 108670 1c7gA 456 1.71e+01 c.67.1.2 90415 1qgnA 445 1.71e+01 1ibjA c.67.1.3 34403 1o5wA 534 1.72e+01 c.3.1.2,d.16.1.5 92520,92521 1o7bT 98 1.76e+01 d.169.1.4 92620 1lv7A 257 1.84e+01 c.37.1.20 78232 2gskA 590 1.85e+01 1nqeA 594 1.88e+01 f.4.3.3 86027 1nqfA 594 1.94e+01 f.4.3.3 86028 1wh5A 80 2.01e+01 1zczA 464 2.06e+01 1qczA 169 2.14e+01 1qczA c.23.8.1 31276 2bxrA 527 2.22e+01 1yadA 221 2.23e+01 1nmsA 249 2.26e+01 c.17.1.1 85879 1qx3A 257 2.29e+01 c.17.1.1 96515 1d7aA 161 2.31e+01 1qczA c.23.8.1 31277 1vbkA 307 2.46e+01 2a2pA 129 2.51e+01 1onfA 500 2.52e+01 c.3.1.5,c.3.1.5,d.87.1.1 87141,87142,87143 2g0tA 350 2.54e+01 1i10A 331 2.54e+01 3ldh c.2.1.5,d.162.1.1 61499,61500 1fyeA 229 2.63e+01 1fyeA c.23.16.4 31477 1fiwA 290 2.65e+01 5ptp 1eepA 404 2.90e+01 1ak5 c.1.5.1 28636 1rpnA 335 2.96e+01 c.2.1.2 97708 1ax4A 467 2.98e+01 1ax4A c.67.1.2 34391 2lbp 346 2.99e+01 2liv c.93.1.1 35709 1ypxA 375 3.03e+01 1g67A 225 3.03e+01 c.1.3.1 60311 1wcgA 464 3.04e+01 1tjoA 182 3.11e+01 1o89A 345 3.20e+01 b.35.1.2,c.2.1.1 92644,92645 2gptA 523 3.23e+01 1vr6A 350 3.39e+01 1pkhA 204 3.45e+01 b.85.4.1 94832 1qy7A 112 3.47e+01 d.58.5.1 96575 1g4sA 226 3.49e+01 c.1.3.1 60247 1rzmA 338 3.49e+01 c.1.10.4 105137 1oi8A 532 3.68e+01 d.114.1.1,d.159.1.2 103942,103943 1cb0A 283 3.69e+01 1cb0A c.56.2.1 33790 1dbp 271 3.85e+01 2dri c.93.1.1 35639 1l0bA 229 4.04e+01 c.15.1.3,c.15.1.3 73391,73392 1znnA 325 4.24e+01 1eceA 358 4.25e+01 1eceA c.1.8.3 28813 1vrxA 358 4.26e+01 1usgA 346 4.30e+01 c.93.1.1 99864 1g8lA 411 4.31e+01 1g8lA b.85.6.1,b.103.1.1,c.57.1.2 60365,60366,60367 1cr6A 554 4.40e+01 1cr6B c.69.1.11,c.108.1.2 34687,43337 1sxrA 183 4.41e+01 d.118.1.1 106101 1i1nA 226 4.47e+01 c.66.1.7 71102 1mxsA 225 4.51e+01 c.1.10.1 91494 1efvB 255 4.53e+01 1efvB c.26.2.3 31634 1thfD 253 4.59e+01 1thfD c.1.2.1 28535 2a1uB 255 4.73e+01 1e0rB 159 4.78e+01 1a6dA c.8.5.2 30824 1x0mA 403 4.79e+01 1r17A 343 4.81e+01 b.2.3.4,b.2.3.4 96796,96797 1hbxG 157 4.98e+01 1awcA a.4.5.21 60934 1i0zA 333 5.01e+01 3ldh c.2.1.5,d.162.1.1 61495,61496 1svdA 473 5.02e+01 1t2fA 333 5.03e+01 c.2.1.5,d.162.1.1 99088,99089 1s2jA 209 5.19e+01 d.118.1.1 105227 1vh7A 265 5.27e+01 c.1.2.1 100646 1g6cA 227 5.33e+01 c.1.3.1 60315 2a22A 215 5.35e+01 2cvhA 220 5.56e+01 1kmkA 406 5.63e+01 c.67.1.3 68696 1m6vA 1073 5.70e+01 a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2 74536,74537,74538,74539,74540,74541 1elt 236 5.71e+01 5ptp b.47.1.2 26281 1jfuA 186 5.74e+01 c.47.1.10 62940 1cs0A 1073 5.83e+01 a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2 18558,31487,31673,31674,41518,41519 1zq6A 359 5.91e+01 2b3zA 373 6.02e+01 2cv9A 252 6.12e+01 2cvbA 188 6.25e+01 1rfmA 344 6.30e+01 c.122.1.1 97385 1qpiA 203 6.35e+01 2tct a.4.1.9,a.121.1.1 16072,19249 1hp1A 516 6.38e+01 d.114.1.1,d.159.1.2 70976,70977 1g69A 228 6.38e+01 c.1.3.1 60313 2ct6A 111 6.44e+01 1z5vA 474 6.46e+01 1bjz 207 6.54e+01 2tct a.4.1.9,a.121.1.1 16065,19242 2tct 207 6.56e+01 2tct a.4.1.9,a.121.1.1 16063,19240 2c54A 379 6.61e+01 1tg7A 971 6.61e+01 1timA 247 6.62e+01 1amk c.1.1.1 28453 2fb5A 205 6.67e+01 1iu9A 111 6.68e+01 c.78.2.1 90694 1j6oA 268 6.91e+01 c.1.9.12 77088 2bleA 367 7.10e+01 2ahdA 165 7.13e+01 2etvA 346 7.14e+01 1m63A 372 7.17e+01 d.159.1.3 78677 1xm7A 195 7.18e+01 1mzhA 225 7.25e+01 c.1.10.1 79698 2jhbA 143 7.29e+01 2jhbA b.54.1.1 26950 1y8aA 332 7.32e+01 1io4D 141 7.35e+01 2jhbA b.54.1.1 62617 2trt 217 7.37e+01 2tct a.4.1.9,a.121.1.1 16064,19241 1ush 550 7.38e+01 1ush d.114.1.1,d.159.1.2 40923,42079 2cdcA 366 7.45e+01 1tcoA 375 7.56e+01 1auiA d.159.1.3 42084 1mf8A 373 7.58e+01 d.159.1.3 79040 1rvkA 382 7.58e+01 c.1.11.2,d.54.1.1 97928,97929 1h9dB 134 7.60e+01 2jhbA b.54.1.1 60822 1a9xA 1073 7.62e+01 a.92.1.1,c.24.1.1,c.30.1.1,c.30.1.1,d.142.1.2,d.142.1.2 18550,31479,31657,31658,41502,41503 1vlvA 325 7.63e+01 c.78.1.1,c.78.1.1 108866,108867 2b8nA 429 7.68e+01 1w7lA 422 7.70e+01 c.67.1.1 109226 1twdA 256 7.72e+01 c.1.30.1 107397 1t2aA 375 7.74e+01 c.2.1.2 99078 1dv1A 449 7.81e+01 1bncA b.84.2.1,c.30.1.1,d.142.1.2 28234,31641,41486 1dv2A 452 7.83e+01 1bncA b.84.2.1,c.30.1.1,d.142.1.2 28238,31645,41490 1oidA 532 7.89e+01 d.114.1.1,d.159.1.2 103952,103953 1j9gA 147 7.94e+01 c.23.5.1 62757 1kmjA 406 7.97e+01 c.67.1.3 68695 1wswA 148 8.01e+01 1bw0A 416 8.04e+01 1bw0A c.67.1.1 34385 1jf9A 408 8.04e+01 1c0nA c.67.1.3 62931 1cl3A 138 8.10e+01 2jhbA b.54.1.1 26949 1zzmA 259 8.11e+01 2csgA 424 8.12e+01 2tpsA 227 8.21e+01 2tpsA c.1.3.1 28591 2a91A 517 8.27e+01 1gw5A 621 8.37e+01 a.118.1.10 70629 1ba2A 271 8.46e+01 2dri c.93.1.1 35640 2a0nA 265 8.48e+01 2b43A 526 8.49e+01 2c59A 379 8.51e+01 2c0cA 362 8.53e+01 1y4iA 398 8.56e+01 1gc0A 398 8.58e+01 c.67.1.3 70168 1pz3A 502 8.58e+01 b.71.1.2,c.1.8.3 95396,95397 1jflA 228 8.59e+01 c.78.2.1,c.78.2.1 71656,71657 1c2oA 539 8.70e+01 2bce c.69.1.1 34610 1c2bA 540 8.71e+01 2bce c.69.1.1 34614 1n5mA 541 8.72e+01 c.69.1.1 80031 1n5rA 543 8.73e+01 c.69.1.1 80037 1p99A 295 8.73e+01 c.94.1.1 94384 2c0pA 548 8.74e+01 1dofA 403 8.74e+01 1c3cA a.127.1.1 19429 1ku6A 549 8.75e+01 c.69.1.1 91037 1mjhA 162 8.76e+01 1mjhA c.26.2.4 31639 1maaA 547 8.77e+01 2bce c.69.1.1 34615 1j9eA 147 8.78e+01 c.23.5.1 62756 1tufA 434 8.80e+01 b.49.2.3,c.1.6.1 107335,107336 1twiA 434 8.91e+01 b.49.2.3,c.1.6.1 107399,107400