# List of top-scoring protein chains for t06-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1iq4A 179 1.05e+00 1iq4A d.77.1.1 62641 1g5cA 170 2.07e+00 1g5cA c.53.2.1 60264 1k3iA 656 3.94e+00 b.1.18.2,b.18.1.1,b.69.1.1 68113,68114,68115 2djkA 133 4.54e+00 1ok0A 74 4.64e+00 b.5.1.1 93191 1gmyA 261 4.80e+00 d.3.1.1 76236 1dq3A 454 5.49e+00 1dq3A b.86.1.2,d.50.3.1,d.95.2.2,d.95.2.2 28380,38798,40585,40586 1fdr 248 5.78e+00 1fdr b.43.4.2,c.25.1.1 25653,31543 1po5A 476 6.49e+00 a.104.1.1 94963 1bkf 107 7.16e+00 1fkj d.26.1.1 38382 1wi6A 88 9.16e+00 2cxaA 256 9.95e+00 1ykjA 394 1.13e+01 1tif 78 1.14e+01 1tif d.15.8.1 37836 1b7yB 785 1.23e+01 1pysB a.6.1.1,a.6.1.1,b.40.4.4,d.58.13.1,d.104.1.1,d.138.1.1 16301,16302,25312,39311,40780,41456 1qsgA 265 1.30e+01 1eny c.2.1.2 29935 1yovA 537 1.32e+01 1k0iA 394 1.40e+01 c.3.1.2,d.16.1.2 67942,67943 1el5A 389 1.60e+01 1b3mA c.3.1.2,d.16.1.3 30369,37937 1dz3A 130 1.67e+01 1dz3A c.23.1.1 31105 1ekgA 127 1.71e+01 1dlxA d.82.2.1 40021 1i2aA 219 1.77e+01 e.24.1.1 90660 1cxqA 162 2.00e+01 1cxqA c.55.3.2 33621 1j83A 180 2.08e+01 b.18.1.12 66430 1fnd 314 2.08e+01 1fnc b.43.4.2,c.25.1.1 25626,31516 1nezG 128 2.17e+01 b.1.1.1 85592 1rsy 152 2.21e+01 1rsy b.7.1.2 23192 2f2gA 221 2.25e+01 5cytR 104 2.35e+01 1ycc a.3.1.1 15878 2gjgA 248 2.47e+01 1t5iA 172 2.52e+01 c.37.1.19 106450 1vhqA 232 2.52e+01 c.23.16.2 100696 1zo0A 126 2.60e+01 1ew0A 130 2.61e+01 1drmA d.110.3.2 40905 1i40A 175 2.67e+01 b.40.5.1 66024 1kjs 74 2.71e+01 1kjs a.50.1.1 17792 1at3A 247 2.83e+01 1at3A b.57.1.1 27021 2a7yA 83 2.87e+01 1rybA 212 2.96e+01 c.56.3.1 98098 1a62 130 2.98e+01 1a62 a.140.3.1,b.40.4.5 64708,64709 1wu7A 434 3.03e+01 1w2yA 229 3.06e+01 a.204.1.1 109140 1rwjA 82 3.21e+01 a.138.1.1 105114 2bcmA 165 3.22e+01 1bx1A 314 3.25e+01 1fnc b.43.4.2,c.25.1.1 25629,31519 1ro7A 259 3.30e+01 c.130.1.1 97667 1cfr 285 3.42e+01 1cfr c.52.1.7 33312 1woyA 500 3.51e+01 1fgkA 310 3.58e+01 1fgkA d.144.1.7 41693 1go3E 187 3.69e+01 b.40.4.5,d.230.1.1 83054,83055 1vckA 115 3.93e+01 1snnA 227 3.94e+01 d.115.1.2 105821 1xj4A 119 4.07e+01 1ybiA 288 4.07e+01 1rypI 222 4.13e+01 d.153.1.4 41877 1o6sB 105 4.14e+01 b.1.6.1 81096 1i58A 189 4.19e+01 1b3qA d.122.1.3 61773 2d13A 227 4.21e+01 1keaA 221 4.22e+01 a.96.1.2 68491 1oaqL 120 4.22e+01 b.1.1.1 92708 1ru4A 400 4.25e+01 b.80.1.9 97836 1xtaA 221 4.31e+01 1i4uA 181 4.38e+01 b.60.1.1 61732 1tzyD 103 4.49e+01 a.22.1.1 107533 1hlvA 131 4.50e+01 a.4.1.7,a.4.1.7 65854,65855 1w4tA 299 4.55e+01 1a4pA 96 4.61e+01 1b4cA a.39.1.2 17176 1n91A 108 4.68e+01 d.206.1.1 80326 2fgeA 995 4.70e+01 2gxfA 142 4.73e+01 1y9wA 140 4.76e+01 1jb9A 316 4.82e+01 1fnc b.43.4.2,c.25.1.1 62840,62841 1ihjA 98 4.88e+01 1pdr b.36.1.1 62382 1p5vA 235 5.08e+01 b.1.11.1,b.7.2.1 87812,87813 1q1rA 431 5.15e+01 c.3.1.5,c.3.1.5,d.87.1.1 95600,95601,95602 2be1A 339 5.16e+01 2dlbA 80 5.20e+01 5eau 548 5.29e+01 5eat a.102.4.1,a.128.1.3 18851,19443 1iloA 77 5.29e+01 c.47.1.1 66205 1gvp 87 5.35e+01 1gvp b.40.4.7 25369 1hcd 118 5.53e+01 1hce b.42.5.2 25624 1dxjA 242 5.60e+01 1cnsA d.2.1.1 36244 1q7hA 153 5.71e+01 b.122.1.1,d.17.6.2 96042,96043 1wh5A 80 5.78e+01 1vddA 228 5.95e+01 e.49.1.1 108519 1kk8B 139 5.95e+01 a.39.1.5 77430 2cveA 191 5.98e+01 1jwiB 125 6.00e+01 d.169.1.1 67384 2azwA 148 6.06e+01 1wdcB 156 6.07e+01 1wdcB a.39.1.5 17302 2g6fX 59 6.19e+01 2g6bA 180 6.44e+01 1hgxA 183 6.45e+01 1tc1A c.61.1.1 34027 2d2yA 145 6.60e+01 1pmzA 86 6.85e+01 a.39.1.10 104195 2ch4A 320 6.90e+01 2a7oA 112 7.32e+01 1tafB 70 7.38e+01 1tafB a.22.1.3 16482 1jmxB 349 7.46e+01 b.69.2.2 66906 1rwiA 270 7.50e+01 b.68.9.1 97987 1vk6A 269 7.51e+01 d.113.1.4,d.113.1.4 100851,100852 2f57A 317 7.54e+01 1s1qA 145 7.67e+01 d.20.1.2 98351 1e4iA 447 7.78e+01 1e70M c.1.8.4 59225 2bvbA 137 7.83e+01 1no1A 126 8.14e+01 a.179.1.1 85913 2ey4C 82 8.19e+01 1mml 265 8.26e+01 1mml e.8.1.2 43015 1s6lA 212 8.31e+01 1yuzA 202 8.31e+01 1pkhA 204 8.33e+01 b.85.4.1 94832 1kb9D 246 8.51e+01 a.3.1.3,f.23.11.1 77317,77318 1odkA 235 8.59e+01 c.56.2.1 86863 1aop 497 8.59e+01 2aop d.58.36.1,d.58.36.1,d.134.1.1,d.134.1.1 39501,39502,41425,41426 1a76 326 8.62e+01 1a76 a.60.7.1,c.120.1.2 18091,33361 1dk0A 188 8.79e+01 1b2vA d.35.1.1 38530 1i8nA 126 8.85e+01 1i8nA g.10.1.2 61976 1io1A 398 8.89e+01 1io1A e.32.1.1 62611 1a2pA 110 8.93e+01 1b20A d.1.1.2 36140 1sqwA 188 8.96e+01